RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 SYS1-DBNDD2H3BUS1 97 aa9.35□□□□□ -0.91
SYNPO-204ENST00000519664 XIRP2A4UGR9 3374 aa9.35□□□□□ -0.91
SYNPO-204ENST00000519664 FNDC10F2Z333 226 aa9.34□□□□□ -0.91
SYNPO-204ENST00000519664 NPFFO15130 113 aa9.34□□□□□ -0.91
SYNPO-204ENST00000519664 ATP6V0E1O15342 81 aa9.34□□□□□ -0.91
SYNPO-204ENST00000519664 NUPR1O60356 82 aa9.34□□□□□ -0.91
SYNPO-204ENST00000519664 KIR3DS1Q14943 382 aa9.34□□□□□ -0.91
SYNPO-204ENST00000519664 GUSBP1Q15486 140 aa9.34□□□□□ -0.91
SYNPO-204ENST00000519664 RRN3P1Q2M238 152 aa9.34□□□□□ -0.91
SYNPO-204ENST00000519664 TEX36Q5VZQ5 186 aa9.34□□□□□ -0.91
SYNPO-204ENST00000519664 DUX3Q96PT4 197 aa9.34□□□□□ -0.91
SYNPO-204ENST00000519664 FN1P02751 2386 aaKnown RBP9.34□□□□□ -0.91
SYNPO-204ENST00000519664 TMEM262E9PQX1 116 aa9.34□□□□□ -0.91
SYNPO-204ENST00000519664 FCN3O75636 299 aa9.34□□□□□ -0.91
SYNPO-204ENST00000519664 EMP1P54849 157 aa9.34□□□□□ -0.91
SYNPO-204ENST00000519664 PROP1O75360 226 aa9.34□□□□□ -0.91
SYNPO-204ENST00000519664 SCGB1A1P11684 91 aa9.34□□□□□ -0.91
SYNPO-204ENST00000519664 LCNL1Q6ZST4 164 aa9.34□□□□□ -0.91
SYNPO-204ENST00000519664 C14orf178Q8N769 122 aaPredicted RBP9.34□□□□□ -0.91
SYNPO-204ENST00000519664 RNF5Q99942 180 aa9.34□□□□□ -0.91
SYNPO-204ENST00000519664 MRPL16Q9NX20 251 aaKnown RBP9.34□□□□□ -0.91
SYNPO-204ENST00000519664 IGHV3-64A0A075B6Q5 118 aa9.34□□□□□ -0.91
SYNPO-204ENST00000519664 IGLC7A0M8Q6 106 aa9.34□□□□□ -0.91
SYNPO-204ENST00000519664 FRMD6-AS1P0C7T7 363 aa9.34□□□□□ -0.91
SYNPO-204ENST00000519664 IGLL1P15814 213 aa9.34□□□□□ -0.91
SYNPO-204ENST00000519664 ZNF418Q8TF45 676 aaPredicted RBP9.34□□□□□ -0.91
SYNPO-204ENST00000519664 ZNF479Q96JC4 524 aa9.34□□□□□ -0.91
SYNPO-204ENST00000519664 MTORP42345 2549 aa9.34□□□□□ -0.91
SYNPO-204ENST00000519664 TRAV21A0A0B4J279 112 aa9.33□□□□□ -0.92
SYNPO-204ENST00000519664 RBX1P62877 108 aa9.33□□□□□ -0.92
SYNPO-204ENST00000519664 CD300EQ496F6 205 aaPredicted RBP9.33□□□□□ -0.92
SYNPO-204ENST00000519664 MRAP2Q96G30 205 aa9.33□□□□□ -0.92
SYNPO-204ENST00000519664 POLQO75417 2590 aa9.33□□□□□ -0.92
SYNPO-204ENST00000519664 E7EUB6 86 aa9.33□□□□□ -0.92
SYNPO-204ENST00000519664 AZU1P20160 251 aa9.33□□□□□ -0.92
SYNPO-204ENST00000519664 ZFAND6Q6FIF0 208 aa9.33□□□□□ -0.92
SYNPO-204ENST00000519664 TMEM75Q8N9X5 138 aa9.33□□□□□ -0.92
SYNPO-204ENST00000519664 IGHV3-73A0A0B4J1V6 119 aa9.33□□□□□ -0.92
SYNPO-204ENST00000519664 H3BRM9 83 aa9.33□□□□□ -0.92
SYNPO-204ENST00000519664 TDRG1Q3Y452 100 aa9.33□□□□□ -0.92
SYNPO-204ENST00000519664 MOB4Q9Y3A3 225 aa9.33□□□□□ -0.92
SYNPO-204ENST00000519664 TNFRSF18Q9Y5U5 241 aa9.33□□□□□ -0.92
SYNPO-204ENST00000519664 OVOL3O00110 214 aa9.32□□□□□ -0.92
SYNPO-204ENST00000519664 LINC01587Q99440 93 aa9.32□□□□□ -0.92
SYNPO-204ENST00000519664 NXT2Q9NPJ8 142 aaKnown RBP9.32□□□□□ -0.92
SYNPO-204ENST00000519664 TRAV12-3A0A0B4J271 114 aa9.32□□□□□ -0.92
SYNPO-204ENST00000519664 IGLC1P0CG04 106 aa9.32□□□□□ -0.92
SYNPO-204ENST00000519664 SUMO2P61956 95 aaKnown RBP9.32□□□□□ -0.92
SYNPO-204ENST00000519664 MINOS1Q5TGZ0 78 aa9.32□□□□□ -0.92
SYNPO-204ENST00000519664 C22orf34Q6ZV56 151 aa9.32□□□□□ -0.92
SYNPO-204ENST00000519664 PRSS33Q8NF86 280 aa9.32□□□□□ -0.92
SYNPO-204ENST00000519664 FXYD5Q96DB9 178 aa9.32□□□□□ -0.92
SYNPO-204ENST00000519664 MINOS1-NBL1R4GNA1 71 aa9.32□□□□□ -0.92
SYNPO-204ENST00000519664 TRBV19A0A075B6N1 114 aa9.32□□□□□ -0.92
SYNPO-204ENST00000519664 IGKV1OR2-108A0A075B7D4 117 aa9.32□□□□□ -0.92
SYNPO-204ENST00000519664 C9orf118A6NHY6 69 aa9.32□□□□□ -0.92
SYNPO-204ENST00000519664 M0R1W7 72 aa9.32□□□□□ -0.92
SYNPO-204ENST00000519664 HLA-DMBP28068 263 aa9.32□□□□□ -0.92
SYNPO-204ENST00000519664 ADAMTSL5Q6ZMM2 481 aa9.32□□□□□ -0.92
SYNPO-204ENST00000519664 MSRB2Q9Y3D2 182 aa9.32□□□□□ -0.92
SYNPO-204ENST00000519664 KMT2EQ8IZD2 1858 aa9.32□□□□□ -0.92
SYNPO-204ENST00000519664 A0A0U1RRA0 63 aa9.32□□□□□ -0.92
SYNPO-204ENST00000519664 LHBP01229 141 aa9.32□□□□□ -0.92
SYNPO-204ENST00000519664 TSSC4Q9Y5U2 329 aaPredicted RBP9.32□□□□□ -0.92
SYNPO-204ENST00000519664 SPINK8P0C7L1 97 aa9.31□□□□□ -0.92
SYNPO-204ENST00000519664 KIAA1549Q9HCM3 1950 aa9.31□□□□□ -0.92
SYNPO-204ENST00000519664 K7EP34 96 aa9.31□□□□□ -0.92
SYNPO-204ENST00000519664 SRSF1Q07955 248 aaKnown RBP eCLIP9.31□□□□□ -0.92
SYNPO-204ENST00000519664 BVES-AS1Q5T3Y7 98 aa9.31□□□□□ -0.92
SYNPO-204ENST00000519664 HCFC1P51610 2035 aa9.31□□□□□ -0.92
SYNPO-204ENST00000519664 DPM2O94777 84 aa9.31□□□□□ -0.92
SYNPO-204ENST00000519664 SHISA9B4DS77 424 aa9.31□□□□□ -0.92
SYNPO-204ENST00000519664 POU2AF1Q16633 256 aa9.31□□□□□ -0.92
SYNPO-204ENST00000519664 C19orf54Q5BKX5 351 aa9.31□□□□□ -0.92
SYNPO-204ENST00000519664 ODF3L1Q8IXM7 274 aa9.31□□□□□ -0.92
SYNPO-204ENST00000519664 TMEM158Q8WZ71 300 aa9.3□□□□□ -0.92
SYNPO-204ENST00000519664 GAGE12HA6NDE8 117 aa9.3□□□□□ -0.92
SYNPO-204ENST00000519664 SPRY2O43597 315 aa9.3□□□□□ -0.92
SYNPO-204ENST00000519664 BRWD1-AS2P59051 145 aa9.3□□□□□ -0.92
SYNPO-204ENST00000519664 MEIG1Q5JSS6 88 aa9.3□□□□□ -0.92
SYNPO-204ENST00000519664 IGFL2Q6UWQ7 119 aa9.3□□□□□ -0.92
SYNPO-204ENST00000519664 DEFB125Q8N687 156 aa9.3□□□□□ -0.92
SYNPO-204ENST00000519664 RHPN1-AS1Q9BWJ2 59 aa9.3□□□□□ -0.92
SYNPO-204ENST00000519664 GAGE2BQ13066 116 aa9.3□□□□□ -0.92
SYNPO-204ENST00000519664 GAGE2EQ4V326 116 aa9.3□□□□□ -0.92
SYNPO-204ENST00000519664 ZC2HC1BQ5TFG8 222 aa9.3□□□□□ -0.92
SYNPO-204ENST00000519664 C11orf52Q96A22 123 aa9.3□□□□□ -0.92
SYNPO-204ENST00000519664 MRPL36Q9P0J6 103 aaKnown RBP9.3□□□□□ -0.92
SYNPO-204ENST00000519664 GAGE2DQ9UEU5 116 aa9.3□□□□□ -0.92
SYNPO-204ENST00000519664 A0A087WWL8 130 aa9.29□□□□□ -0.92
SYNPO-204ENST00000519664 VWC2Q2TAL6 325 aa9.29□□□□□ -0.92
SYNPO-204ENST00000519664 UBE2L6O14933 153 aa9.29□□□□□ -0.92
SYNPO-204ENST00000519664 BCL6BQ8N143 479 aaPredicted RBP9.29□□□□□ -0.92
SYNPO-204ENST00000519664 ZC2HC1AQ96GY0 325 aa9.29□□□□□ -0.92
SYNPO-204ENST00000519664 IGKCP01834 107 aa9.29□□□□□ -0.92
SYNPO-204ENST00000519664 PRSS57Q6UWY2 283 aa9.29□□□□□ -0.92
SYNPO-204ENST00000519664 TRIOO75962 3097 aa9.29□□□□□ -0.92
SYNPO-204ENST00000519664 OOSP1A8MZH6 123 aa9.29□□□□□ -0.92
SYNPO-204ENST00000519664 IL17RELQ6ZVW7 336 aa9.29□□□□□ -0.92
SYNPO-204ENST00000519664 LINC00311Q8N616 119 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms