RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 SLC39A9Q9NUM3 307 aa4.3□□□□□ -1.72
NUP54-218ENST00000515460 B9D1Q9UPM9 204 aa4.3□□□□□ -1.72
NUP54-218ENST00000515460 OR2W1Q9Y3N9 320 aa4.3□□□□□ -1.72
NUP54-218ENST00000515460 MPC1Q9Y5U8 109 aa4.3□□□□□ -1.72
NUP54-218ENST00000515460 ARL2-SNX15V9GYD0 113 aa4.3□□□□□ -1.72
NUP54-218ENST00000515460 EML6Q6ZMW3 1958 aa4.3□□□□□ -1.72
NUP54-218ENST00000515460 FREM1Q5H8C1 2179 aa4.29□□□□□ -1.72
NUP54-218ENST00000515460 IGLV5-37A0A075B6J1 123 aa4.29□□□□□ -1.72
NUP54-218ENST00000515460 IGHV4-30-2A0A087WSY4 118 aa4.29□□□□□ -1.72
NUP54-218ENST00000515460 A0A087X0K7 114 aa4.29□□□□□ -1.72
NUP54-218ENST00000515460 A0A1B0GWB2 263 aa4.29□□□□□ -1.72
NUP54-218ENST00000515460 C2orf70A6NJV1 201 aa4.29□□□□□ -1.72
NUP54-218ENST00000515460 SNURFLB1AK76 121 aa4.29□□□□□ -1.72
NUP54-218ENST00000515460 UQCRQO14949 82 aa4.29□□□□□ -1.72
NUP54-218ENST00000515460 APCSP02743 223 aa4.29□□□□□ -1.72
NUP54-218ENST00000515460 MRPL3P09001 348 aaKnown RBP4.29□□□□□ -1.72
NUP54-218ENST00000515460 ZNF688P0C7X2 276 aa4.29□□□□□ -1.72
NUP54-218ENST00000515460 EDN2P20800 178 aa4.29□□□□□ -1.72
NUP54-218ENST00000515460 NKX2-1P43699 371 aaPredicted RBP4.29□□□□□ -1.72
NUP54-218ENST00000515460 RBM11P57052 281 aaKnown RBP4.29□□□□□ -1.72
NUP54-218ENST00000515460 FXYD6P3P58550 94 aa4.29□□□□□ -1.72
NUP54-218ENST00000515460 SUPT4H1P63272 117 aaKnown RBP4.29□□□□□ -1.72
NUP54-218ENST00000515460 BSPH1Q075Z2 132 aa4.29□□□□□ -1.72
NUP54-218ENST00000515460 HSPB3Q12988 150 aa4.29□□□□□ -1.72
NUP54-218ENST00000515460 KLF5Q13887 457 aaPredicted RBP4.29□□□□□ -1.72
NUP54-218ENST00000515460 WFDC2Q14508 124 aa4.29□□□□□ -1.72
NUP54-218ENST00000515460 SPRNQ5BIV9 151 aa4.29□□□□□ -1.72
NUP54-218ENST00000515460 SLC35E4Q6ICL7 350 aa4.29□□□□□ -1.72
NUP54-218ENST00000515460 LINC00336Q6ZUF6 198 aa4.29□□□□□ -1.72
NUP54-218ENST00000515460 SSX8Q7RTT4 187 aa4.29□□□□□ -1.72
NUP54-218ENST00000515460 TRAPPC6BQ86SZ2 158 aa4.29□□□□□ -1.72
NUP54-218ENST00000515460 LHFPL1Q86WI0 220 aa4.29□□□□□ -1.72
NUP54-218ENST00000515460 ARPC1AQ92747 370 aa4.29□□□□□ -1.72
NUP54-218ENST00000515460 SLC25A44Q96H78 314 aaPredicted RBP4.29□□□□□ -1.72
NUP54-218ENST00000515460 KIR2DL4Q99706 377 aa4.29□□□□□ -1.72
NUP54-218ENST00000515460 NAA38Q9BRA0 125 aaKnown RBP4.29□□□□□ -1.72
NUP54-218ENST00000515460 C5orf66Q9H5L9 145 aa4.29□□□□□ -1.72
NUP54-218ENST00000515460 HIGD1BQ9P298 99 aa4.29□□□□□ -1.72
NUP54-218ENST00000515460 PRO0461Q9UI25 63 aa4.29□□□□□ -1.72
NUP54-218ENST00000515460 KLF12Q9Y4X4 402 aa4.29□□□□□ -1.72
NUP54-218ENST00000515460 LY96Q9Y6Y9 160 aa4.29□□□□□ -1.72
NUP54-218ENST00000515460 HECTD4Q9Y4D8 3996 aa4.28□□□□□ -1.72
NUP54-218ENST00000515460 CR1P17927 2039 aa4.28□□□□□ -1.72
NUP54-218ENST00000515460 IGHV3-15A0A0B4J1V0 119 aa4.28□□□□□ -1.72
NUP54-218ENST00000515460 A0A1W2PPK0 400 aa4.28□□□□□ -1.72
NUP54-218ENST00000515460 SHISA9B4DS77 424 aa4.28□□□□□ -1.72
NUP54-218ENST00000515460 E7EQL1 145 aa4.28□□□□□ -1.72
NUP54-218ENST00000515460 SDCBPO00560 298 aaPredicted RBP4.28□□□□□ -1.72
NUP54-218ENST00000515460 BUB3O43684 328 aa4.28□□□□□ -1.72
NUP54-218ENST00000515460 DUSP14O95147 198 aaKnown RBP4.28□□□□□ -1.72
NUP54-218ENST00000515460 IGHG1P01857 330 aa4.28□□□□□ -1.72
NUP54-218ENST00000515460 IFI6P09912 130 aa4.28□□□□□ -1.72
NUP54-218ENST00000515460 IGLC6P0CF74 106 aa4.28□□□□□ -1.72
NUP54-218ENST00000515460 CBLN1P23435 193 aa4.28□□□□□ -1.72
NUP54-218ENST00000515460 PRDX2P32119 198 aa4.28□□□□□ -1.72
NUP54-218ENST00000515460 MPV17P39210 176 aa4.28□□□□□ -1.72
NUP54-218ENST00000515460 OPRK1P41145 380 aa4.28□□□□□ -1.72
NUP54-218ENST00000515460 TAS2R45P59539 299 aa4.28□□□□□ -1.72
NUP54-218ENST00000515460 TMEM258P61165 79 aa4.28□□□□□ -1.72
NUP54-218ENST00000515460 ZNF90Q03938 601 aa4.28□□□□□ -1.72
NUP54-218ENST00000515460 PHLDA2Q53GA4 152 aa4.28□□□□□ -1.72
NUP54-218ENST00000515460 NMSQ5H8A3 153 aa4.28□□□□□ -1.72
NUP54-218ENST00000515460 DMRTC1Q5HYR2 192 aa4.28□□□□□ -1.72
NUP54-218ENST00000515460 C9orf153Q5TBE3 101 aa4.28□□□□□ -1.72
NUP54-218ENST00000515460 C1orf195Q5TG92 126 aa4.28□□□□□ -1.72
NUP54-218ENST00000515460 C11orf71Q6IPW1 123 aa4.28□□□□□ -1.72
NUP54-218ENST00000515460 HAPLN4Q86UW8 402 aa4.28□□□□□ -1.72
NUP54-218ENST00000515460 RFLNBQ8N5W9 214 aa4.28□□□□□ -1.72
NUP54-218ENST00000515460 TMEM86BQ8N661 226 aa4.28□□□□□ -1.72
NUP54-218ENST00000515460 ZNF114Q8NC26 417 aa4.28□□□□□ -1.72
NUP54-218ENST00000515460 OTOSQ8NHW6 89 aa4.28□□□□□ -1.72
NUP54-218ENST00000515460 CHCHD1Q96BP2 118 aaKnown RBP4.28□□□□□ -1.72
NUP54-218ENST00000515460 ADAT3Q96EY9 351 aaPredicted RBP4.28□□□□□ -1.72
NUP54-218ENST00000515460 ZNF665Q9H7R5 613 aa4.28□□□□□ -1.72
NUP54-218ENST00000515460 CKLFQ9UBR5 152 aa4.28□□□□□ -1.72
NUP54-218ENST00000515460 TP53TG1Q9Y2A0 90 aa4.28□□□□□ -1.72
NUP54-218ENST00000515460 TIMM9Q9Y5J7 89 aa4.28□□□□□ -1.72
NUP54-218ENST00000515460 KCNE3Q9Y6H6 103 aa4.28□□□□□ -1.72
NUP54-218ENST00000515460 MPDZO75970 2070 aa4.28□□□□□ -1.72
NUP54-218ENST00000515460 DNAH9Q9NYC9 4486 aa4.27□□□□□ -1.73
NUP54-218ENST00000515460 ARHGAP21Q5T5U3 1957 aa4.27□□□□□ -1.73
NUP54-218ENST00000515460 MED12Q93074 2177 aa4.27□□□□□ -1.73
NUP54-218ENST00000515460 A0A1W2PQD3 144 aa4.27□□□□□ -1.73
NUP54-218ENST00000515460 TMEM89A2RUT3 159 aa4.27□□□□□ -1.73
NUP54-218ENST00000515460 M0R2P5 195 aa4.27□□□□□ -1.73
NUP54-218ENST00000515460 TNFSF12O43508 249 aa4.27□□□□□ -1.73
NUP54-218ENST00000515460 ENSAO43768 121 aaKnown RBP4.27□□□□□ -1.73
NUP54-218ENST00000515460 LYZL6O75951 148 aa4.27□□□□□ -1.73
NUP54-218ENST00000515460 PRB2P02812 416 aaPredicted RBP4.27□□□□□ -1.73
NUP54-218ENST00000515460 H2BFMP0C1H6 154 aa4.27□□□□□ -1.73
NUP54-218ENST00000515460 IGHV4-31P0DP07 118 aa4.27□□□□□ -1.73
NUP54-218ENST00000515460 IGHV1-2P23083 117 aa4.27□□□□□ -1.73
NUP54-218ENST00000515460 NMUP48645 174 aa4.27□□□□□ -1.73
NUP54-218ENST00000515460 EFNB2P52799 333 aa4.27□□□□□ -1.73
NUP54-218ENST00000515460 HILS1P60008 231 aa4.27□□□□□ -1.73
NUP54-218ENST00000515460 HERVK_113P63121 156 aa4.27□□□□□ -1.73
NUP54-218ENST00000515460 LOXL1Q08397 574 aaPredicted RBP4.27□□□□□ -1.73
NUP54-218ENST00000515460 RNPS1Q15287 305 aaKnown RBP4.27□□□□□ -1.73
NUP54-218ENST00000515460 ZNF141Q15928 474 aa4.27□□□□□ -1.73
NUP54-218ENST00000515460 TAL2Q16559 108 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms