RNA–Protein interactions for RNA: ENST00000510569.5

NUP54-209, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-209ENST00000510569 FOXA3P55318 350 aaPredicted RBP2.38□□□□□ -2.03
NUP54-209ENST00000510569 CCL20P78556 96 aa2.38□□□□□ -2.03
NUP54-209ENST00000510569 DIAPH2-AS1Q14236 149 aa2.38□□□□□ -2.03
NUP54-209ENST00000510569 PDGFRLQ15198 375 aa2.38□□□□□ -2.03
NUP54-209ENST00000510569 SP6Q3SY56 376 aa2.38□□□□□ -2.03
NUP54-209ENST00000510569 Q5W150 140 aa2.38□□□□□ -2.03
NUP54-209ENST00000510569 MORN3Q6PF18 240 aaPredicted RBP2.38□□□□□ -2.03
NUP54-209ENST00000510569 CEMP1Q6PRD7 247 aaPredicted RBP2.38□□□□□ -2.03
NUP54-209ENST00000510569 SSX8Q7RTT4 187 aa2.38□□□□□ -2.03
NUP54-209ENST00000510569 SCXQ7RTU7 201 aa2.38□□□□□ -2.03
NUP54-209ENST00000510569 LINC00305Q7Z4B0 112 aa2.38□□□□□ -2.03
NUP54-209ENST00000510569 FANCMQ8IYD8 2048 aa2.38□□□□□ -2.03
NUP54-209ENST00000510569 C10orf111Q8N326 155 aa2.38□□□□□ -2.03
NUP54-209ENST00000510569 SLC25A29Q8N8R3 303 aa2.38□□□□□ -2.03
NUP54-209ENST00000510569 DCANP1Q8TF63 244 aa2.38□□□□□ -2.03
NUP54-209ENST00000510569 RBPMSQ93062 196 aaKnown RBP2.38□□□□□ -2.03
NUP54-209ENST00000510569 NAA38Q9BRA0 125 aaKnown RBP2.38□□□□□ -2.03
NUP54-209ENST00000510569 HDHD3Q9BSH5 251 aaPredicted RBP2.38□□□□□ -2.03
NUP54-209ENST00000510569 ADAT1Q9BUB4 502 aaKnown RBP2.38□□□□□ -2.03
NUP54-209ENST00000510569 TP73-AS1Q9UF72 201 aa2.38□□□□□ -2.03
NUP54-209ENST00000510569 NINQ8N4C6 2090 aa2.38□□□□□ -2.03
NUP54-209ENST00000510569 LAMA3Q16787 3333 aa2.38□□□□□ -2.03
NUP54-209ENST00000510569 KIAA1549LQ6ZVL6 1849 aa2.38□□□□□ -2.03
NUP54-209ENST00000510569 PRRC2BQ5JSZ5 2229 aaKnown RBP2.37□□□□□ -2.03
NUP54-209ENST00000510569 HEATR5BQ9P2D3 2071 aa2.37□□□□□ -2.03
NUP54-209ENST00000510569 NCKAP5O14513 1909 aa2.37□□□□□ -2.03
NUP54-209ENST00000510569 MUC22E2RYF6 1773 aaPredicted RBP2.37□□□□□ -2.03
NUP54-209ENST00000510569 TRAV13-1A0A0B4J241 112 aa2.37□□□□□ -2.03
NUP54-209ENST00000510569 OR51F1A6NGY5 319 aa2.37□□□□□ -2.03
NUP54-209ENST00000510569 ZNF860A6NHJ4 632 aa2.37□□□□□ -2.03
NUP54-209ENST00000510569 ZNF727A8MUV8 499 aa2.37□□□□□ -2.03
NUP54-209ENST00000510569 A8MWV9 139 aa2.37□□□□□ -2.03
NUP54-209ENST00000510569 C9JCJ5 164 aa2.37□□□□□ -2.03
NUP54-209ENST00000510569 C19orf84I3L1E1 186 aa2.37□□□□□ -2.03
NUP54-209ENST00000510569 TMEM256-PLSCR3K7ERE1 68 aa2.37□□□□□ -2.03
NUP54-209ENST00000510569 NDUFB3O43676 98 aa2.37□□□□□ -2.03
NUP54-209ENST00000510569 NAPSAO96009 420 aa2.37□□□□□ -2.03
NUP54-209ENST00000510569 SOD1P00441 154 aa2.37□□□□□ -2.03
NUP54-209ENST00000510569 SEC11BP0C7V7 166 aa2.37□□□□□ -2.03
NUP54-209ENST00000510569 ZNF80P51504 273 aaPredicted RBP2.37□□□□□ -2.03
NUP54-209ENST00000510569 POLR2JP52435 117 aaKnown RBP2.37□□□□□ -2.03
NUP54-209ENST00000510569 UBE2BP63146 152 aa2.37□□□□□ -2.03
NUP54-209ENST00000510569 HES1Q14469 280 aa2.37□□□□□ -2.03
NUP54-209ENST00000510569 MPV17L2Q567V2 206 aa2.37□□□□□ -2.03
NUP54-209ENST00000510569 CLLU1Q5K131 121 aa2.37□□□□□ -2.03
NUP54-209ENST00000510569 C22orf39Q6P5X5 142 aa2.37□□□□□ -2.03
NUP54-209ENST00000510569 LYPD2Q6UXB3 125 aa2.37□□□□□ -2.03
NUP54-209ENST00000510569 PHF5AQ7RTV0 110 aaKnown RBP2.37□□□□□ -2.03
NUP54-209ENST00000510569 AAED1Q7RTV5 226 aa2.37□□□□□ -2.03
NUP54-209ENST00000510569 SLC35E3Q7Z769 313 aa2.37□□□□□ -2.03
NUP54-209ENST00000510569 ZNF645Q8N7E2 425 aa2.37□□□□□ -2.03
NUP54-209ENST00000510569 ZFP62Q8NB50 900 aaPredicted RBP2.37□□□□□ -2.03
NUP54-209ENST00000510569 APCDD1LQ8NCL9 501 aa2.37□□□□□ -2.03
NUP54-209ENST00000510569 OR5C1Q8NGR4 320 aa2.37□□□□□ -2.03
NUP54-209ENST00000510569 OR4K13Q8NH42 304 aa2.37□□□□□ -2.03
NUP54-209ENST00000510569 STAG3L4Q8TBR4 150 aa2.37□□□□□ -2.03
NUP54-209ENST00000510569 TMEM158Q8WZ71 300 aa2.37□□□□□ -2.03
NUP54-209ENST00000510569 RMI2Q96E14 147 aa2.37□□□□□ -2.03
NUP54-209ENST00000510569 GINS4Q9BRT9 223 aa2.37□□□□□ -2.03
NUP54-209ENST00000510569 ZNF286AQ9HBT8 521 aa2.37□□□□□ -2.03
NUP54-209ENST00000510569 KLK5Q9Y337 293 aaPredicted RBP2.37□□□□□ -2.03
NUP54-209ENST00000510569 NOP16Q9Y3C1 178 aaKnown RBP2.37□□□□□ -2.03
NUP54-209ENST00000510569 NUP210LQ5VU65 1888 aa2.37□□□□□ -2.03
NUP54-209ENST00000510569 IGLV1-50A0A075B6I6 118 aa2.36□□□□□ -2.03
NUP54-209ENST00000510569 IGHV3OR15-7A0A075B7D8 119 aa2.36□□□□□ -2.03
NUP54-209ENST00000510569 IGHV3-72A0A0B4J1Y9 119 aa2.36□□□□□ -2.03
NUP54-209ENST00000510569 IGKV1-6A0A0C4DH72 117 aa2.36□□□□□ -2.03
NUP54-209ENST00000510569 IGKV1-12A0A0C4DH73 117 aa2.36□□□□□ -2.03
NUP54-209ENST00000510569 A0A0D9SEW6 157 aa2.36□□□□□ -2.03
NUP54-209ENST00000510569 TRBV27A0A0K0K1C4 114 aa2.36□□□□□ -2.03
NUP54-209ENST00000510569 ODAMA1E959 279 aa2.36□□□□□ -2.03
NUP54-209ENST00000510569 H3BMG7 143 aa2.36□□□□□ -2.03
NUP54-209ENST00000510569 BUB1B-PAK6H3BSN5 160 aa2.36□□□□□ -2.03
NUP54-209ENST00000510569 IGKV1-39P01597 117 aa2.36□□□□□ -2.03
NUP54-209ENST00000510569 IGKV1D-12P01611 117 aa2.36□□□□□ -2.03
NUP54-209ENST00000510569 IGLV2-23P01705 113 aa2.36□□□□□ -2.03
NUP54-209ENST00000510569 IGHV3-11P01762 117 aa2.36□□□□□ -2.03
NUP54-209ENST00000510569 IGKV1D-39P04432 117 aa2.36□□□□□ -2.03
NUP54-209ENST00000510569 CTSDP07339 412 aaPredicted RBP2.36□□□□□ -2.03
NUP54-209ENST00000510569 SPINK8P0C7L1 97 aa2.36□□□□□ -2.03
NUP54-209ENST00000510569 LINC00032P0C843 101 aa2.36□□□□□ -2.03
NUP54-209ENST00000510569 S100A4P26447 101 aaKnown RBP2.36□□□□□ -2.03
NUP54-209ENST00000510569 CXCL5P42830 114 aa2.36□□□□□ -2.03
NUP54-209ENST00000510569 TAS2R45P59539 299 aa2.36□□□□□ -2.03
NUP54-209ENST00000510569 YPEL3P61236 119 aaPredicted RBP2.36□□□□□ -2.03
NUP54-209ENST00000510569 UBA52P62987 128 aaKnown RBP2.36□□□□□ -2.03
NUP54-209ENST00000510569 ATP5G2Q06055 141 aa2.36□□□□□ -2.03
NUP54-209ENST00000510569 CATR1Q13166 79 aa2.36□□□□□ -2.03
NUP54-209ENST00000510569 ZNF846Q147U1 533 aa2.36□□□□□ -2.03
NUP54-209ENST00000510569 AADACL3Q5VUY0 350 aa2.36□□□□□ -2.03
NUP54-209ENST00000510569 PDPNQ86YL7 162 aa2.36□□□□□ -2.03
NUP54-209ENST00000510569 ATOH7Q8N100 152 aa2.36□□□□□ -2.03
NUP54-209ENST00000510569 ORMDL3Q8N138 153 aa2.36□□□□□ -2.03
NUP54-209ENST00000510569 TEX29Q8N6K0 151 aa2.36□□□□□ -2.03
NUP54-209ENST00000510569 OR5D16Q8NGK9 328 aa2.36□□□□□ -2.03
NUP54-209ENST00000510569 COPS9Q8WXC6 57 aa2.36□□□□□ -2.03
NUP54-209ENST00000510569 S100ZQ8WXG8 99 aa2.36□□□□□ -2.03
NUP54-209ENST00000510569 CIB3Q96Q77 187 aaPredicted RBP2.36□□□□□ -2.03
NUP54-209ENST00000510569 CAMK2N2Q96S95 79 aa2.36□□□□□ -2.03
NUP54-209ENST00000510569 NAA60Q9H7X0 242 aa2.36□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms