RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, humanhuman

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-208ENST00000504489 TRAV1-1A0A0B4J248 108 aa8.67□□□□□ -1.02
PDLIM5-208ENST00000504489 RBAKDNA6NC62 111 aa8.67□□□□□ -1.02
PDLIM5-208ENST00000504489 BOLA2-SMG1P6H3BVE0 249 aa8.67□□□□□ -1.02
PDLIM5-208ENST00000504489 SLC25A5P05141 298 aaKnown RBP8.67□□□□□ -1.02
PDLIM5-208ENST00000504489 FXYD7P58549 80 aa8.67□□□□□ -1.02
PDLIM5-208ENST00000504489 CMTM2Q8TAZ6 248 aa8.67□□□□□ -1.02
PDLIM5-208ENST00000504489 AGPAT4-IT1Q9H0P7 198 aa8.67□□□□□ -1.02
PDLIM5-208ENST00000504489 PPP1R14DQ9NXH3 145 aa8.67□□□□□ -1.02
PDLIM5-208ENST00000504489 STAB2Q8WWQ8 2551 aa8.67□□□□□ -1.02
PDLIM5-208ENST00000504489 IGKV2-40A0A087WW87 121 aaPredicted RBP8.66□□□□□ -1.02
PDLIM5-208ENST00000504489 DIRC3C9JPN6 131 aa8.66□□□□□ -1.02
PDLIM5-208ENST00000504489 IGKV2D-40P01614 121 aaPredicted RBP8.66□□□□□ -1.02
PDLIM5-208ENST00000504489 CT45A10P0DMU9 189 aa8.66□□□□□ -1.02
PDLIM5-208ENST00000504489 SUMO1P63165 101 aaKnown RBP8.66□□□□□ -1.02
PDLIM5-208ENST00000504489 SPINK13Q1W4C9 94 aa8.66□□□□□ -1.02
PDLIM5-208ENST00000504489 C5orf17Q8NAS9 161 aa8.66□□□□□ -1.02
PDLIM5-208ENST00000504489 IGF2BP2-AS1Q96M15 143 aa8.66□□□□□ -1.02
PDLIM5-208ENST00000504489 NKX6-2Q9C056 277 aaPredicted RBP8.66□□□□□ -1.02
PDLIM5-208ENST00000504489 ARL2-SNX15V9GYD0 113 aa8.66□□□□□ -1.02
PDLIM5-208ENST00000504489 FAM74A7A6NL05 159 aa8.65□□□□□ -1.02
PDLIM5-208ENST00000504489 ZNF705EA8MWA4 302 aaPredicted RBP8.65□□□□□ -1.02
PDLIM5-208ENST00000504489 GGTLC3B5MD39 225 aa8.65□□□□□ -1.02
PDLIM5-208ENST00000504489 M0R2Z0 102 aa8.65□□□□□ -1.02
PDLIM5-208ENST00000504489 CRXO43186 299 aaPredicted RBP8.65□□□□□ -1.02
PDLIM5-208ENST00000504489 TSPOP30536 169 aa8.65□□□□□ -1.02
PDLIM5-208ENST00000504489 CDKN1BP46527 198 aa8.65□□□□□ -1.02
PDLIM5-208ENST00000504489 PPT1P50897 306 aa8.65□□□□□ -1.02
PDLIM5-208ENST00000504489 ERCC8Q13216 396 aa8.65□□□□□ -1.02
PDLIM5-208ENST00000504489 TMEM78Q5T7P6 136 aa8.65□□□□□ -1.02
PDLIM5-208ENST00000504489 OR11H2Q8NH07 326 aa8.65□□□□□ -1.02
PDLIM5-208ENST00000504489 FAM19A4Q96LR4 140 aa8.65□□□□□ -1.02
PDLIM5-208ENST00000504489 RARRES2Q99969 163 aa8.65□□□□□ -1.02
PDLIM5-208ENST00000504489 VGLL1Q99990 258 aa8.65□□□□□ -1.02
PDLIM5-208ENST00000504489 YTHDF2Q9Y5A9 579 aaKnown RBP8.65□□□□□ -1.02
PDLIM5-208ENST00000504489 TRBV7-9A0A0J9YWB2 115 aa8.64□□□□□ -1.03
PDLIM5-208ENST00000504489 SERTM2A0A1B0GWG4 89 aa8.64□□□□□ -1.03
PDLIM5-208ENST00000504489 TEX46H3BTG2 121 aa8.64□□□□□ -1.03
PDLIM5-208ENST00000504489 HBE1P02100 147 aa8.64□□□□□ -1.03
PDLIM5-208ENST00000504489 NMBP08949 121 aa8.64□□□□□ -1.03
PDLIM5-208ENST00000504489 LEPP41159 167 aa8.64□□□□□ -1.03
PDLIM5-208ENST00000504489 ZNF138P52744 262 aa8.64□□□□□ -1.03
PDLIM5-208ENST00000504489 UBE2G2P60604 165 aa8.64□□□□□ -1.03
PDLIM5-208ENST00000504489 ALKAL2Q6UX46 152 aa8.64□□□□□ -1.03
PDLIM5-208ENST00000504489 ZNF705AQ6ZN79 300 aaPredicted RBP8.64□□□□□ -1.03
PDLIM5-208ENST00000504489 ZNF492Q9P255 531 aa8.64□□□□□ -1.03
PDLIM5-208ENST00000504489 EPDR1Q9UM22 224 aa8.64□□□□□ -1.03
PDLIM5-208ENST00000504489 LENEPQ9Y5L5 61 aa8.64□□□□□ -1.03
PDLIM5-208ENST00000504489 INSP01308 110 aa8.63□□□□□ -1.03
PDLIM5-208ENST00000504489 TCRAP04437 139 aa8.63□□□□□ -1.03
PDLIM5-208ENST00000504489 CRISP2P16562 243 aa8.63□□□□□ -1.03
PDLIM5-208ENST00000504489 GNG5P63218 68 aa8.63□□□□□ -1.03
PDLIM5-208ENST00000504489 GOLT1AQ6ZVE7 132 aa8.63□□□□□ -1.03
PDLIM5-208ENST00000504489 CCDC28AQ8IWP9 274 aa8.63□□□□□ -1.03
PDLIM5-208ENST00000504489 C1orf158Q8N1D5 194 aa8.63□□□□□ -1.03
PDLIM5-208ENST00000504489 NEU1Q99519 415 aa8.63□□□□□ -1.03
PDLIM5-208ENST00000504489 C20orf144Q9BQM9 153 aa8.63□□□□□ -1.03
PDLIM5-208ENST00000504489 GOLT1BQ9Y3E0 138 aa8.63□□□□□ -1.03
PDLIM5-208ENST00000504489 X6R8D5 127 aa8.63□□□□□ -1.03
PDLIM5-208ENST00000504489 TRAV12-2A0A075B6T6 113 aa8.62□□□□□ -1.03
PDLIM5-208ENST00000504489 A0A1B0GV50 99 aa8.62□□□□□ -1.03
PDLIM5-208ENST00000504489 SMIM9A6NGZ8 99 aa8.62□□□□□ -1.03
PDLIM5-208ENST00000504489 KLLNB2CW77 178 aa8.62□□□□□ -1.03
PDLIM5-208ENST00000504489 K7EQM0 130 aa8.62□□□□□ -1.03
PDLIM5-208ENST00000504489 PAGE4O60829 102 aa8.62□□□□□ -1.03
PDLIM5-208ENST00000504489 MIFP14174 115 aa8.62□□□□□ -1.03
PDLIM5-208ENST00000504489 BLOC1S1P78537 153 aa8.62□□□□□ -1.03
PDLIM5-208ENST00000504489 CCL20P78556 96 aa8.62□□□□□ -1.03
PDLIM5-208ENST00000504489 PMS2P11Q13670 270 aa8.62□□□□□ -1.03
PDLIM5-208ENST00000504489 TMEM256Q8N2U0 113 aa8.62□□□□□ -1.03
PDLIM5-208ENST00000504489 TCEAL7Q9BRU2 100 aa8.62□□□□□ -1.03
PDLIM5-208ENST00000504489 ATG101Q9BSB4 218 aa8.62□□□□□ -1.03
PDLIM5-208ENST00000504489 EDA2RQ9HAV5 297 aa8.62□□□□□ -1.03
PDLIM5-208ENST00000504489 RPH3ALQ9UNE2 315 aa8.62□□□□□ -1.03
PDLIM5-208ENST00000504489 FBLL1A6NHQ2 334 aaKnown RBP8.61□□□□□ -1.03
PDLIM5-208ENST00000504489 IFNA7P01567 189 aa8.61□□□□□ -1.03
PDLIM5-208ENST00000504489 KIR3DS1Q14943 382 aa8.61□□□□□ -1.03
PDLIM5-208ENST00000504489 GFI1BQ5VTD9 330 aa8.61□□□□□ -1.03
PDLIM5-208ENST00000504489 CST9LP1Q5W188 147 aa8.61□□□□□ -1.03
PDLIM5-208ENST00000504489 ZFAND2AQ8N6M9 145 aa8.61□□□□□ -1.03
PDLIM5-208ENST00000504489 CYB561D1Q8N8Q1 229 aa8.61□□□□□ -1.03
PDLIM5-208ENST00000504489 Q8NAQ8 132 aa8.61□□□□□ -1.03
PDLIM5-208ENST00000504489 Q8TAT8 98 aa8.61□□□□□ -1.03
PDLIM5-208ENST00000504489 HIST1H2BAQ96A08 127 aa8.61□□□□□ -1.03
PDLIM5-208ENST00000504489 MANBALQ9NQG1 85 aa8.61□□□□□ -1.03
PDLIM5-208ENST00000504489 IGHV3OR16-12A0A075B7B8 117 aa8.6□□□□□ -1.03
PDLIM5-208ENST00000504489 TRAV8-1A0A0A6YYK1 113 aa8.6□□□□□ -1.03
PDLIM5-208ENST00000504489 C7orf71A4D174 169 aa8.6□□□□□ -1.03
PDLIM5-208ENST00000504489 F6UZH7 168 aa8.6□□□□□ -1.03
PDLIM5-208ENST00000504489 PEX7O00628 323 aa8.6□□□□□ -1.03
PDLIM5-208ENST00000504489 GPX1P07203 203 aa8.6□□□□□ -1.03
PDLIM5-208ENST00000504489 RBMY1A1P0DJD3 496 aaKnown RBP8.6□□□□□ -1.03
PDLIM5-208ENST00000504489 RBMY1CP0DJD4 496 aa8.6□□□□□ -1.03
PDLIM5-208ENST00000504489 RBMY1FQ15415 496 aaKnown RBP8.6□□□□□ -1.03
PDLIM5-208ENST00000504489 LYPD6BQ8NI32 183 aa8.6□□□□□ -1.03
PDLIM5-208ENST00000504489 WWC2-AS2Q96NR7 200 aa8.6□□□□□ -1.03
PDLIM5-208ENST00000504489 TMEM208Q9BTX3 173 aa8.6□□□□□ -1.03
PDLIM5-208ENST00000504489 C11orf68Q9H3H3 251 aaKnown RBP8.6□□□□□ -1.03
PDLIM5-208ENST00000504489 A0A0J9YWU9 116 aa8.59□□□□□ -1.03
PDLIM5-208ENST00000504489 IGLV2-11P01706 119 aa8.59□□□□□ -1.03
PDLIM5-208ENST00000504489 ATP5G3P48201 142 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms