RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 GGTLC3B5MD39 225 aa7.35□□□□□ -1.23
NUP54-203ENST00000504173 UBE2CO00762 179 aa7.35□□□□□ -1.23
NUP54-203ENST00000504173 CA1P00915 261 aaPredicted RBP7.35□□□□□ -1.23
NUP54-203ENST00000504173 IGKV2D-40P01614 121 aaPredicted RBP7.35□□□□□ -1.23
NUP54-203ENST00000504173 SUMO1P63165 101 aaKnown RBP7.35□□□□□ -1.23
NUP54-203ENST00000504173 CST9LP1Q5W188 147 aa7.35□□□□□ -1.23
NUP54-203ENST00000504173 TEX261Q6UWH6 196 aa7.35□□□□□ -1.23
NUP54-203ENST00000504173 C5orf17Q8NAS9 161 aa7.35□□□□□ -1.23
NUP54-203ENST00000504173 CLUHP3Q96NS8 147 aa7.35□□□□□ -1.23
NUP54-203ENST00000504173 A8MTW9 85 aa7.34□□□□□ -1.23
NUP54-203ENST00000504173 DIRC3C9JPN6 131 aa7.34□□□□□ -1.23
NUP54-203ENST00000504173 NPIPB6E9PJ23 425 aa7.34□□□□□ -1.23
NUP54-203ENST00000504173 PAGE4O60829 102 aa7.34□□□□□ -1.23
NUP54-203ENST00000504173 IFNA7P01567 189 aa7.34□□□□□ -1.23
NUP54-203ENST00000504173 FXYD7P58549 80 aa7.34□□□□□ -1.23
NUP54-203ENST00000504173 GNG5P63218 68 aa7.34□□□□□ -1.23
NUP54-203ENST00000504173 CCL20P78556 96 aa7.34□□□□□ -1.23
NUP54-203ENST00000504173 ERCC8Q13216 396 aa7.34□□□□□ -1.23
NUP54-203ENST00000504173 GOLT1AQ6ZVE7 132 aa7.34□□□□□ -1.23
NUP54-203ENST00000504173 ARL6IP6Q8N6S5 226 aa7.34□□□□□ -1.23
NUP54-203ENST00000504173 ZNF680Q8NEM1 530 aa7.34□□□□□ -1.23
NUP54-203ENST00000504173 NKX6-2Q9C056 277 aaPredicted RBP7.34□□□□□ -1.23
NUP54-203ENST00000504173 SLC35B3Q9H1N7 401 aa7.34□□□□□ -1.23
NUP54-203ENST00000504173 MANBALQ9NQG1 85 aa7.34□□□□□ -1.23
NUP54-203ENST00000504173 GNG13Q9P2W3 67 aa7.34□□□□□ -1.23
NUP54-203ENST00000504173 ARL2-SNX15V9GYD0 113 aa7.34□□□□□ -1.23
NUP54-203ENST00000504173 RBAKDNA6NC62 111 aa7.33□□□□□ -1.24
NUP54-203ENST00000504173 IFNA1P01562 189 aa7.33□□□□□ -1.24
NUP54-203ENST00000504173 SPINK13Q1W4C9 94 aa7.33□□□□□ -1.24
NUP54-203ENST00000504173 DEFB135Q30KP9 77 aa7.33□□□□□ -1.24
NUP54-203ENST00000504173 TMEM78Q5T7P6 136 aa7.33□□□□□ -1.24
NUP54-203ENST00000504173 ZFAND6Q6FIF0 208 aa7.33□□□□□ -1.24
NUP54-203ENST00000504173 AMTNQ6UX39 209 aa7.33□□□□□ -1.24
NUP54-203ENST00000504173 C9orf47Q6ZRZ4 202 aa7.33□□□□□ -1.24
NUP54-203ENST00000504173 LINC00477Q96M19 166 aa7.33□□□□□ -1.24
NUP54-203ENST00000504173 VGLL1Q99990 258 aa7.33□□□□□ -1.24
NUP54-203ENST00000504173 SPATA25Q9BR10 227 aa7.33□□□□□ -1.24
NUP54-203ENST00000504173 C1QTNF4Q9BXJ3 329 aa7.33□□□□□ -1.24
NUP54-203ENST00000504173 AGPAT4-IT1Q9H0P7 198 aa7.33□□□□□ -1.24
NUP54-203ENST00000504173 ZMAT4Q9H898 229 aa7.33□□□□□ -1.24
NUP54-203ENST00000504173 XCL2Q9UBD3 114 aa7.33□□□□□ -1.24
NUP54-203ENST00000504173 EPDR1Q9UM22 224 aa7.33□□□□□ -1.24
NUP54-203ENST00000504173 SERTM2A0A1B0GWG4 89 aa7.32□□□□□ -1.24
NUP54-203ENST00000504173 K7EQM0 130 aa7.32□□□□□ -1.24
NUP54-203ENST00000504173 M0R2Z0 102 aa7.32□□□□□ -1.24
NUP54-203ENST00000504173 AMBPP02760 352 aa7.32□□□□□ -1.24
NUP54-203ENST00000504173 TCRAP04437 139 aa7.32□□□□□ -1.24
NUP54-203ENST00000504173 GIG44P09565 113 aaPredicted RBP7.32□□□□□ -1.24
NUP54-203ENST00000504173 CT45A10P0DMU9 189 aa7.32□□□□□ -1.24
NUP54-203ENST00000504173 TSPOP30536 169 aa7.32□□□□□ -1.24
NUP54-203ENST00000504173 LEPP41159 167 aa7.32□□□□□ -1.24
NUP54-203ENST00000504173 ATP5G3P48201 142 aa7.32□□□□□ -1.24
NUP54-203ENST00000504173 Q6ZWC4 215 aa7.32□□□□□ -1.24
NUP54-203ENST00000504173 CYB561D1Q8N8Q1 229 aa7.32□□□□□ -1.24
NUP54-203ENST00000504173 RCHY1Q96PM5 261 aa7.32□□□□□ -1.24
NUP54-203ENST00000504173 ODF3Q96PU9 254 aa7.32□□□□□ -1.24
NUP54-203ENST00000504173 TM2D3Q9BRN9 247 aa7.32□□□□□ -1.24
NUP54-203ENST00000504173 ATG101Q9BSB4 218 aa7.32□□□□□ -1.24
NUP54-203ENST00000504173 RETNQ9HD89 108 aa7.32□□□□□ -1.24
NUP54-203ENST00000504173 TRAV8-1A0A0A6YYK1 113 aa7.31□□□□□ -1.24
NUP54-203ENST00000504173 C11orf94C9JXX5 98 aa7.31□□□□□ -1.24
NUP54-203ENST00000504173 F6UZH7 168 aa7.31□□□□□ -1.24
NUP54-203ENST00000504173 J3KRW8 73 aa7.31□□□□□ -1.24
NUP54-203ENST00000504173 PEX7O00628 323 aa7.31□□□□□ -1.24
NUP54-203ENST00000504173 SPRY2O43597 315 aa7.31□□□□□ -1.24
NUP54-203ENST00000504173 BCL2P10415 239 aa7.31□□□□□ -1.24
NUP54-203ENST00000504173 CDKN1BP46527 198 aa7.31□□□□□ -1.24
NUP54-203ENST00000504173 ZNF138P52744 262 aa7.31□□□□□ -1.24
NUP54-203ENST00000504173 Q8TAT8 98 aa7.31□□□□□ -1.24
NUP54-203ENST00000504173 HIST1H2BAQ96A08 127 aa7.31□□□□□ -1.24
NUP54-203ENST00000504173 TCEAL7Q9BRU2 100 aa7.31□□□□□ -1.24
NUP54-203ENST00000504173 ZNF492Q9P255 531 aa7.31□□□□□ -1.24
NUP54-203ENST00000504173 TRAV12-2A0A075B6T6 113 aa7.3□□□□□ -1.24
NUP54-203ENST00000504173 INSP01308 110 aa7.3□□□□□ -1.24
NUP54-203ENST00000504173 TAGLN2P37802 199 aaKnown RBP7.3□□□□□ -1.24
NUP54-203ENST00000504173 AKR1C3P42330 323 aa7.3□□□□□ -1.24
NUP54-203ENST00000504173 PMS2P11Q13670 270 aa7.3□□□□□ -1.24
NUP54-203ENST00000504173 CCDC28AQ8IWP9 274 aa7.3□□□□□ -1.24
NUP54-203ENST00000504173 LYPD6BQ8NI32 183 aa7.3□□□□□ -1.24
NUP54-203ENST00000504173 PCNPQ8WW12 178 aaKnown RBP7.3□□□□□ -1.24
NUP54-203ENST00000504173 RNF183Q96D59 192 aa7.3□□□□□ -1.24
NUP54-203ENST00000504173 SGK494Q96LW2 274 aa7.3□□□□□ -1.24
NUP54-203ENST00000504173 IGF2BP2-AS1Q96M15 143 aa7.3□□□□□ -1.24
NUP54-203ENST00000504173 TXNDC17Q9BRA2 123 aa7.3□□□□□ -1.24
NUP54-203ENST00000504173 TP53TG1Q9Y2A0 90 aa7.3□□□□□ -1.24
NUP54-203ENST00000504173 GOLT1BQ9Y3E0 138 aa7.3□□□□□ -1.24
NUP54-203ENST00000504173 IGHV3OR16-12A0A075B7B8 117 aa7.29□□□□□ -1.24
NUP54-203ENST00000504173 TRAV34A0A0B4J273 112 aa7.29□□□□□ -1.24
NUP54-203ENST00000504173 SCO2A0A1W2PP80 73 aa7.29□□□□□ -1.24
NUP54-203ENST00000504173 FBLL1A6NHQ2 334 aaKnown RBP7.29□□□□□ -1.24
NUP54-203ENST00000504173 CRXO43186 299 aaPredicted RBP7.29□□□□□ -1.24
NUP54-203ENST00000504173 NMBP08949 121 aa7.29□□□□□ -1.24
NUP54-203ENST00000504173 FLI1Q01543 452 aaPredicted RBP7.29□□□□□ -1.24
NUP54-203ENST00000504173 TMEM75Q8N9X5 138 aa7.29□□□□□ -1.24
NUP54-203ENST00000504173 CSNK1G2-AS1Q8NCQ2 148 aa7.29□□□□□ -1.24
NUP54-203ENST00000504173 OVOL2Q9BRP0 275 aa7.29□□□□□ -1.24
NUP54-203ENST00000504173 NDFIP1Q9BT67 221 aa7.29□□□□□ -1.24
NUP54-203ENST00000504173 TMEM208Q9BTX3 173 aa7.29□□□□□ -1.24
NUP54-203ENST00000504173 VAX2Q9UIW0 290 aa7.29□□□□□ -1.24
NUP54-203ENST00000504173 PSG8Q9UQ74 426 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms