RNA–Protein interactions for RNA: ENST00000496653.4

LIMS1-213, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 4

Gene LIMS1, Length 626 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-213ENST00000496653 TMED6Q8WW62 240 aa10.6□□□□□ -0.71
LIMS1-213ENST00000496653 NIPSNAP3BQ9BS92 247 aa10.6□□□□□ -0.71
LIMS1-213ENST00000496653 MAP1LC3BQ9GZQ8 125 aa10.6□□□□□ -0.71
LIMS1-213ENST00000496653 LENEPQ9Y5L5 61 aa10.6□□□□□ -0.71
LIMS1-213ENST00000496653 IGKV2-40A0A087WW87 121 aaPredicted RBP10.59□□□□□ -0.71
LIMS1-213ENST00000496653 A0A1W2PRE2 83 aa10.59□□□□□ -0.71
LIMS1-213ENST00000496653 PGPA6NDG6 321 aa10.59□□□□□ -0.71
LIMS1-213ENST00000496653 CXorf65A6NEN9 183 aa10.59□□□□□ -0.71
LIMS1-213ENST00000496653 NUPR2A6NF83 97 aa10.59□□□□□ -0.71
LIMS1-213ENST00000496653 FBLL1A6NHQ2 334 aaKnown RBP10.59□□□□□ -0.71
LIMS1-213ENST00000496653 CRXO43186 299 aaPredicted RBP10.59□□□□□ -0.71
LIMS1-213ENST00000496653 IGKV2D-40P01614 121 aaPredicted RBP10.59□□□□□ -0.71
LIMS1-213ENST00000496653 ZNF138P52744 262 aa10.59□□□□□ -0.71
LIMS1-213ENST00000496653 LGALSLQ3ZCW2 172 aaPredicted RBP10.59□□□□□ -0.71
LIMS1-213ENST00000496653 C1orf158Q8N1D5 194 aa10.59□□□□□ -0.71
LIMS1-213ENST00000496653 TCEAL7Q9BRU2 100 aa10.59□□□□□ -0.71
LIMS1-213ENST00000496653 ARL2-SNX15V9GYD0 113 aa10.59□□□□□ -0.71
LIMS1-213ENST00000496653 NBEAL2Q6ZNJ1 2754 aa10.59□□□□□ -0.71
LIMS1-213ENST00000496653 TENM3Q9P273 2699 aa10.58□□□□□ -0.72
LIMS1-213ENST00000496653 TRAV12-2A0A075B6T6 113 aa10.58□□□□□ -0.72
LIMS1-213ENST00000496653 LOC102723971A0A1B0GUV8 181 aa10.58□□□□□ -0.72
LIMS1-213ENST00000496653 DIRC3C9JPN6 131 aa10.58□□□□□ -0.72
LIMS1-213ENST00000496653 TEX46H3BTG2 121 aa10.58□□□□□ -0.72
LIMS1-213ENST00000496653 CT45A10P0DMU9 189 aa10.58□□□□□ -0.72
LIMS1-213ENST00000496653 CRISP2P16562 243 aa10.58□□□□□ -0.72
LIMS1-213ENST00000496653 PPT1P50897 306 aa10.58□□□□□ -0.72
LIMS1-213ENST00000496653 FAM213BQ8TBF2 198 aa10.58□□□□□ -0.72
LIMS1-213ENST00000496653 LINC01587Q99440 93 aa10.58□□□□□ -0.72
LIMS1-213ENST00000496653 NDFIP1Q9BT67 221 aa10.58□□□□□ -0.72
LIMS1-213ENST00000496653 C7orf71A4D174 169 aa10.57□□□□□ -0.72
LIMS1-213ENST00000496653 EIF3GO75821 320 aaKnown RBP eCLIP10.57□□□□□ -0.72
LIMS1-213ENST00000496653 ZNF726P1Q15940 193 aa10.57□□□□□ -0.72
LIMS1-213ENST00000496653 CASC10Q5T4H9 136 aa10.57□□□□□ -0.72
LIMS1-213ENST00000496653 GFI1BQ5VTD9 330 aa10.57□□□□□ -0.72
LIMS1-213ENST00000496653 ZNF493Q6ZR52 646 aa10.57□□□□□ -0.72
LIMS1-213ENST00000496653 CCDC28AQ8IWP9 274 aa10.57□□□□□ -0.72
LIMS1-213ENST00000496653 C16orf74Q96GX8 76 aa10.57□□□□□ -0.72
LIMS1-213ENST00000496653 PYGO2Q9BRQ0 406 aa10.57□□□□□ -0.72
LIMS1-213ENST00000496653 AGPAT4-IT1Q9H0P7 198 aa10.57□□□□□ -0.72
LIMS1-213ENST00000496653 ZNF492Q9P255 531 aa10.57□□□□□ -0.72
LIMS1-213ENST00000496653 AGRNO00468 2067 aa10.56□□□□□ -0.72
LIMS1-213ENST00000496653 KLLNB2CW77 178 aa10.56□□□□□ -0.72
LIMS1-213ENST00000496653 C11orf94C9JXX5 98 aa10.56□□□□□ -0.72
LIMS1-213ENST00000496653 GPX1P07203 203 aa10.56□□□□□ -0.72
LIMS1-213ENST00000496653 SPART-AS1P0CW21 52 aa10.56□□□□□ -0.72
LIMS1-213ENST00000496653 RBMY1A1P0DJD3 496 aaKnown RBP10.56□□□□□ -0.72
LIMS1-213ENST00000496653 RBMY1CP0DJD4 496 aa10.56□□□□□ -0.72
LIMS1-213ENST00000496653 ERCC8Q13216 396 aa10.56□□□□□ -0.72
LIMS1-213ENST00000496653 RBMY1FQ15415 496 aaKnown RBP10.56□□□□□ -0.72
LIMS1-213ENST00000496653 GOLT1AQ6ZVE7 132 aa10.56□□□□□ -0.72
LIMS1-213ENST00000496653 FAM19A4Q96LR4 140 aa10.56□□□□□ -0.72
LIMS1-213ENST00000496653 RPH3ALQ9UNE2 315 aa10.56□□□□□ -0.72
LIMS1-213ENST00000496653 KLK5Q9Y337 293 aaPredicted RBP10.56□□□□□ -0.72
LIMS1-213ENST00000496653 F6UZH7 168 aa10.55□□□□□ -0.72
LIMS1-213ENST00000496653 DEFB4AO15263 64 aa10.55□□□□□ -0.72
LIMS1-213ENST00000496653 SSX7Q7RTT5 188 aa10.55□□□□□ -0.72
LIMS1-213ENST00000496653 CYB561D1Q8N8Q1 229 aa10.55□□□□□ -0.72
LIMS1-213ENST00000496653 TMEM263Q8WUH6 116 aaKnown RBP10.55□□□□□ -0.72
LIMS1-213ENST00000496653 SFT2D1Q8WV19 159 aa10.55□□□□□ -0.72
LIMS1-213ENST00000496653 MBD3L1Q8WWY6 194 aa10.55□□□□□ -0.72
LIMS1-213ENST00000496653 VGLL1Q99990 258 aa10.55□□□□□ -0.72
LIMS1-213ENST00000496653 ATG101Q9BSB4 218 aa10.55□□□□□ -0.72
LIMS1-213ENST00000496653 GGTLC3B5MD39 225 aa10.54□□□□□ -0.72
LIMS1-213ENST00000496653 IFNA7P01567 189 aa10.54□□□□□ -0.72
LIMS1-213ENST00000496653 TCRAP04437 139 aa10.54□□□□□ -0.72
LIMS1-213ENST00000496653 H2AFB1P0C5Y9 115 aa10.54□□□□□ -0.72
LIMS1-213ENST00000496653 FHITP49789 147 aa10.54□□□□□ -0.72
LIMS1-213ENST00000496653 SUMO1P63165 101 aaKnown RBP10.54□□□□□ -0.72
LIMS1-213ENST00000496653 PMS2P11Q13670 270 aa10.54□□□□□ -0.72
LIMS1-213ENST00000496653 ZFAND6Q6FIF0 208 aa10.54□□□□□ -0.72
LIMS1-213ENST00000496653 C9orf62Q8N4C0 152 aa10.54□□□□□ -0.72
LIMS1-213ENST00000496653 ZNF680Q8NEM1 530 aa10.54□□□□□ -0.72
LIMS1-213ENST00000496653 HIST1H2BAQ96A08 127 aa10.54□□□□□ -0.72
LIMS1-213ENST00000496653 EPDR1Q9UM22 224 aa10.54□□□□□ -0.72
LIMS1-213ENST00000496653 TRAV12-3A0A0B4J271 114 aa10.53□□□□□ -0.72
LIMS1-213ENST00000496653 LYRM9A8MSI8 78 aa10.53□□□□□ -0.72
LIMS1-213ENST00000496653 J3KRW8 73 aa10.53□□□□□ -0.72
LIMS1-213ENST00000496653 PRB4P10163 310 aaPredicted RBP10.53□□□□□ -0.72
LIMS1-213ENST00000496653 EMP1P54849 157 aa10.53□□□□□ -0.72
LIMS1-213ENST00000496653 FGF8P55075 233 aaPredicted RBP10.53□□□□□ -0.72
LIMS1-213ENST00000496653 ZFAND2AQ8N6M9 145 aa10.53□□□□□ -0.72
LIMS1-213ENST00000496653 TMEM75Q8N9X5 138 aa10.53□□□□□ -0.72
LIMS1-213ENST00000496653 Q8TAT8 98 aa10.53□□□□□ -0.72
LIMS1-213ENST00000496653 LINC00467Q9BRT7 94 aa10.53□□□□□ -0.72
LIMS1-213ENST00000496653 YTHDF2Q9Y5A9 579 aaKnown RBP10.53□□□□□ -0.72
LIMS1-213ENST00000496653 A0A1B0GVG6 124 aa10.52□□□□□ -0.73
LIMS1-213ENST00000496653 FAM74A7A6NL05 159 aa10.52□□□□□ -0.73
LIMS1-213ENST00000496653 ZNF705GA8MUZ8 300 aaPredicted RBP10.52□□□□□ -0.73
LIMS1-213ENST00000496653 RNASE4P34096 147 aaKnown RBP10.52□□□□□ -0.73
LIMS1-213ENST00000496653 SULT1A2P50226 295 aa10.52□□□□□ -0.73
LIMS1-213ENST00000496653 CEMP1Q6PRD7 247 aaPredicted RBP10.52□□□□□ -0.73
LIMS1-213ENST00000496653 PHLDA1Q8WV24 401 aaPredicted RBP10.52□□□□□ -0.73
LIMS1-213ENST00000496653 DKK2Q9UBU2 259 aa10.52□□□□□ -0.73
LIMS1-213ENST00000496653 TRAV10A0A0B4J240 114 aa10.51□□□□□ -0.73
LIMS1-213ENST00000496653 TRAV1-1A0A0B4J248 108 aa10.51□□□□□ -0.73
LIMS1-213ENST00000496653 RGS13O14921 159 aa10.51□□□□□ -0.73
LIMS1-213ENST00000496653 HTN1P15515 57 aa10.51□□□□□ -0.73
LIMS1-213ENST00000496653 TCTAP57738 103 aa10.51□□□□□ -0.73
LIMS1-213ENST00000496653 NANOS2P60321 138 aaKnown RBP10.51□□□□□ -0.73
LIMS1-213ENST00000496653 UBE2G2P60604 165 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms