RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, human

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-223	ENST00000494123	C11orf94	C9JXX5	98 aa		10.66	□□□□□ -0.7
BRCA1-223	ENST00000494123		F6UZH7	168 aa		10.66	□□□□□ -0.7
BRCA1-223	ENST00000494123		M0R2Z0	102 aa		10.66	□□□□□ -0.7
BRCA1-223	ENST00000494123	TSPO	P30536	169 aa		10.66	□□□□□ -0.7
BRCA1-223	ENST00000494123	SPINK13	Q1W4C9	94 aa		10.66	□□□□□ -0.7
BRCA1-223	ENST00000494123		Q6ZWC4	215 aa		10.66	□□□□□ -0.7
BRCA1-223	ENST00000494123	CYB561D1	Q8N8Q1	229 aa		10.66	□□□□□ -0.7
BRCA1-223	ENST00000494123	SPATA25	Q9BR10	227 aa		10.66	□□□□□ -0.7
BRCA1-223	ENST00000494123	TCEAL7	Q9BRU2	100 aa		10.66	□□□□□ -0.7
BRCA1-223	ENST00000494123	ZMAT4	Q9H898	229 aa		10.66	□□□□□ -0.7
BRCA1-223	ENST00000494123	AMBP	P02760	352 aa		10.66	□□□□□ -0.7
BRCA1-223	ENST00000494123	CT45A10	P0DMU9	189 aa		10.66	□□□□□ -0.7
BRCA1-223	ENST00000494123	LEP	P41159	167 aa		10.66	□□□□□ -0.7
BRCA1-223	ENST00000494123	CDKN1B	P46527	198 aa		10.66	□□□□□ -0.7
BRCA1-223	ENST00000494123	ZNF138	P52744	262 aa		10.66	□□□□□ -0.7
BRCA1-223	ENST00000494123	PCNP	Q8WW12	178 aa	Known RBP	10.66	□□□□□ -0.7
BRCA1-223	ENST00000494123	HIST1H2BA	Q96A08	127 aa		10.66	□□□□□ -0.7
BRCA1-223	ENST00000494123	RCHY1	Q96PM5	261 aa		10.66	□□□□□ -0.7
BRCA1-223	ENST00000494123	ODF3	Q96PU9	254 aa		10.66	□□□□□ -0.7
BRCA1-223	ENST00000494123	PEX7	O00628	323 aa		10.65	□□□□□ -0.7
BRCA1-223	ENST00000494123	NHLRC4	P0CG21	123 aa	Predicted RBP	10.65	□□□□□ -0.7
BRCA1-223	ENST00000494123	BCL2	P10415	239 aa		10.65	□□□□□ -0.7
BRCA1-223	ENST00000494123	TAGLN2	P37802	199 aa	Known RBP	10.65	□□□□□ -0.7
BRCA1-223	ENST00000494123	RAB14	P61106	215 aa		10.65	□□□□□ -0.7
BRCA1-223	ENST00000494123	PMS2P11	Q13670	270 aa		10.65	□□□□□ -0.7
BRCA1-223	ENST00000494123	CCDC28A	Q8IWP9	274 aa		10.65	□□□□□ -0.7
BRCA1-223	ENST00000494123	LYPD6B	Q8NI32	183 aa		10.65	□□□□□ -0.7
BRCA1-223	ENST00000494123		Q8TAT8	98 aa		10.65	□□□□□ -0.7
BRCA1-223	ENST00000494123	TXNDC17	Q9BRA2	123 aa		10.65	□□□□□ -0.7
BRCA1-223	ENST00000494123	TM2D3	Q9BRN9	247 aa		10.65	□□□□□ -0.7
BRCA1-223	ENST00000494123	ZNF492	Q9P255	531 aa		10.65	□□□□□ -0.7
BRCA1-223	ENST00000494123	TRAV8-1	A0A0A6YYK1	113 aa		10.64	□□□□□ -0.71
BRCA1-223	ENST00000494123		J3KRW8	73 aa		10.64	□□□□□ -0.71
BRCA1-223	ENST00000494123	GIG44	P09565	113 aa	Predicted RBP	10.64	□□□□□ -0.71
BRCA1-223	ENST00000494123	ZNF767P	Q75MW2	155 aa		10.64	□□□□□ -0.71
BRCA1-223	ENST00000494123	SGK494	Q96LW2	274 aa		10.64	□□□□□ -0.71
BRCA1-223	ENST00000494123	TRAV12-2	A0A075B6T6	113 aa		10.63	□□□□□ -0.71
BRCA1-223	ENST00000494123	SPRY2	O43597	315 aa		10.63	□□□□□ -0.71
BRCA1-223	ENST00000494123	INS	P01308	110 aa		10.63	□□□□□ -0.71
BRCA1-223	ENST00000494123	MEF2B	Q02080	365 aa	Predicted RBP	10.63	□□□□□ -0.71
BRCA1-223	ENST00000494123	TMEM75	Q8N9X5	138 aa		10.63	□□□□□ -0.71
BRCA1-223	ENST00000494123	RNF183	Q96D59	192 aa		10.63	□□□□□ -0.71
BRCA1-223	ENST00000494123	IGF2BP2-AS1	Q96M15	143 aa		10.63	□□□□□ -0.71
BRCA1-223	ENST00000494123	RETN	Q9HD89	108 aa		10.63	□□□□□ -0.71
BRCA1-223	ENST00000494123	VAX2	Q9UIW0	290 aa		10.63	□□□□□ -0.71
BRCA1-223	ENST00000494123	FBLL1	A6NHQ2	334 aa	Known RBP	10.62	□□□□□ -0.71
BRCA1-223	ENST00000494123	NMB	P08949	121 aa		10.62	□□□□□ -0.71
BRCA1-223	ENST00000494123	AKR1C3	P42330	323 aa		10.62	□□□□□ -0.71
BRCA1-223	ENST00000494123	UBE2G1	P62253	170 aa		10.62	□□□□□ -0.71
BRCA1-223	ENST00000494123	NDFIP1	Q9BT67	221 aa		10.62	□□□□□ -0.71
BRCA1-223	ENST00000494123	TP53TG1	Q9Y2A0	90 aa		10.62	□□□□□ -0.71
BRCA1-223	ENST00000494123	TRAV34	A0A0B4J273	112 aa		10.62	□□□□□ -0.71
BRCA1-223	ENST00000494123	LOC102723971	A0A1B0GUV8	181 aa		10.62	□□□□□ -0.71
BRCA1-223	ENST00000494123	SCO2	A0A1W2PP80	73 aa		10.62	□□□□□ -0.71
BRCA1-223	ENST00000494123	RBFOX3	A6NFN3	312 aa		10.62	□□□□□ -0.71
BRCA1-223	ENST00000494123	GPX1	P07203	203 aa		10.62	□□□□□ -0.71
BRCA1-223	ENST00000494123	FLI1	Q01543	452 aa	Predicted RBP	10.62	□□□□□ -0.71
BRCA1-223	ENST00000494123	PRNT	Q86SH4	94 aa		10.62	□□□□□ -0.71
BRCA1-223	ENST00000494123	CSNK1G2-AS1	Q8NCQ2	148 aa		10.62	□□□□□ -0.71
BRCA1-223	ENST00000494123	OVOL2	Q9BRP0	275 aa		10.62	□□□□□ -0.71
BRCA1-223	ENST00000494123	TMEM208	Q9BTX3	173 aa		10.62	□□□□□ -0.71
BRCA1-223	ENST00000494123	PSG8	Q9UQ74	426 aa		10.62	□□□□□ -0.71
BRCA1-223	ENST00000494123	GOLT1B	Q9Y3E0	138 aa		10.62	□□□□□ -0.71
BRCA1-223	ENST00000494123	LENEP	Q9Y5L5	61 aa		10.62	□□□□□ -0.71
BRCA1-223	ENST00000494123	IGHV3OR16-12	A0A075B7B8	117 aa		10.61	□□□□□ -0.71
BRCA1-223	ENST00000494123	TRBV7-9	A0A0J9YWB2	115 aa		10.61	□□□□□ -0.71
BRCA1-223	ENST00000494123	CRX	O43186	299 aa	Predicted RBP	10.61	□□□□□ -0.71
BRCA1-223	ENST00000494123	PDE6D	O43924	150 aa		10.61	□□□□□ -0.71
BRCA1-223	ENST00000494123	CRISP2	P16562	243 aa		10.61	□□□□□ -0.71
BRCA1-223	ENST00000494123	FMC1	Q96HJ9	113 aa		10.61	□□□□□ -0.71
BRCA1-223	ENST00000494123	FAM19A4	Q96LR4	140 aa		10.61	□□□□□ -0.71
BRCA1-223	ENST00000494123	LINC00479	Q96M42	142 aa		10.61	□□□□□ -0.71
BRCA1-223	ENST00000494123	EIF5A2	Q9GZV4	153 aa	Known RBP	10.61	□□□□□ -0.71
BRCA1-223	ENST00000494123	IFITM2	Q01629	132 aa		10.6	□□□□□ -0.71
BRCA1-223	ENST00000494123	KIR3DS1	Q14943	382 aa		10.6	□□□□□ -0.71
BRCA1-223	ENST00000494123	TOR2A	Q5JU69	321 aa		10.6	□□□□□ -0.71
BRCA1-223	ENST00000494123	GFI1B	Q5VTD9	330 aa		10.6	□□□□□ -0.71
BRCA1-223	ENST00000494123	RARRES2	Q99969	163 aa		10.6	□□□□□ -0.71
BRCA1-223	ENST00000494123	TREM1	Q9NP99	234 aa		10.6	□□□□□ -0.71
BRCA1-223	ENST00000494123	NBEAL2	Q6ZNJ1	2754 aa		10.6	□□□□□ -0.71
BRCA1-223	ENST00000494123	C7orf71	A4D174	169 aa		10.59	□□□□□ -0.71
BRCA1-223	ENST00000494123	KLLN	B2CW77	178 aa		10.59	□□□□□ -0.71
BRCA1-223	ENST00000494123	IGLV2-11	P01706	119 aa		10.59	□□□□□ -0.71
BRCA1-223	ENST00000494123	RNASE4	P34096	147 aa	Known RBP	10.59	□□□□□ -0.71
BRCA1-223	ENST00000494123	ZFAND2A	Q8N6M9	145 aa		10.59	□□□□□ -0.71
BRCA1-223	ENST00000494123	OR11H2	Q8NH07	326 aa		10.59	□□□□□ -0.71
BRCA1-223	ENST00000494123	FAM210A	Q96ND0	272 aa		10.59	□□□□□ -0.71
BRCA1-223	ENST00000494123	NIPSNAP3B	Q9BS92	247 aa		10.59	□□□□□ -0.71
BRCA1-223	ENST00000494123	PRKDC	P78527	4128 aa	Known RBP	10.59	□□□□□ -0.71
BRCA1-223	ENST00000494123	TRAV12-3	A0A0B4J271	114 aa		10.58	□□□□□ -0.72
BRCA1-223	ENST00000494123	S100A9	P06702	114 aa	Known RBP	10.58	□□□□□ -0.72
BRCA1-223	ENST00000494123	BTN1A1	Q13410	526 aa		10.58	□□□□□ -0.72
BRCA1-223	ENST00000494123	ZNF506	Q5JVG8	444 aa		10.58	□□□□□ -0.72
BRCA1-223	ENST00000494123	SAPCD1	Q5SSQ6	148 aa		10.58	□□□□□ -0.72
BRCA1-223	ENST00000494123		Q86TA4	180 aa		10.58	□□□□□ -0.72
BRCA1-223	ENST00000494123	C2CD4C	Q8TF44	421 aa		10.58	□□□□□ -0.72
BRCA1-223	ENST00000494123	C11orf52	Q96A22	123 aa		10.58	□□□□□ -0.72
BRCA1-223	ENST00000494123	C20orf144	Q9BQM9	153 aa		10.58	□□□□□ -0.72
BRCA1-223	ENST00000494123	MED9	Q9NWA0	146 aa		10.58	□□□□□ -0.72
BRCA1-223	ENST00000494123	KLF12	Q9Y4X4	402 aa		10.58	□□□□□ -0.72

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