RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 PDE6HQ13956 83 aa9.47□□□□□ -0.89
COL6A3-211ENST00000491233 MZT2BQ6NZ67 158 aa9.47□□□□□ -0.89
COL6A3-211ENST00000491233 EXOC3-AS1Q8N2X6 119 aa9.47□□□□□ -0.89
COL6A3-211ENST00000491233 THAP6Q8TBB0 222 aa9.47□□□□□ -0.89
COL6A3-211ENST00000491233 KLLNB2CW77 178 aa9.46□□□□□ -0.9
COL6A3-211ENST00000491233 CD300CQ08708 224 aa9.46□□□□□ -0.9
COL6A3-211ENST00000491233 DAZ2Q13117 558 aaKnown RBP9.46□□□□□ -0.9
COL6A3-211ENST00000491233 MIR17HGQ75NE6 70 aa9.46□□□□□ -0.9
COL6A3-211ENST00000491233 C11orf72Q8NBR9 251 aa9.46□□□□□ -0.9
COL6A3-211ENST00000491233 ZNF680Q8NEM1 530 aa9.46□□□□□ -0.9
COL6A3-211ENST00000491233 FAM19A4Q96LR4 140 aa9.46□□□□□ -0.9
COL6A3-211ENST00000491233 SLC25A2Q9BXI2 301 aa9.46□□□□□ -0.9
COL6A3-211ENST00000491233 KRTAP1-5Q9BYS1 174 aa9.46□□□□□ -0.9
COL6A3-211ENST00000491233 AGPAT4-IT1Q9H0P7 198 aa9.46□□□□□ -0.9
COL6A3-211ENST00000491233 AAMDCQ9H7C9 122 aa9.46□□□□□ -0.9
COL6A3-211ENST00000491233 Q9H8V8 135 aa9.46□□□□□ -0.9
COL6A3-211ENST00000491233 GSN-AS1Q9NRJ2 163 aa9.46□□□□□ -0.9
COL6A3-211ENST00000491233 IGKV2-40A0A087WW87 121 aaPredicted RBP9.45□□□□□ -0.9
COL6A3-211ENST00000491233 SIX6O95475 246 aa9.45□□□□□ -0.9
COL6A3-211ENST00000491233 IGKV2D-40P01614 121 aaPredicted RBP9.45□□□□□ -0.9
COL6A3-211ENST00000491233 NHLH2Q02577 135 aa9.45□□□□□ -0.9
COL6A3-211ENST00000491233 ASAH1Q13510 395 aa9.45□□□□□ -0.9
COL6A3-211ENST00000491233 ICAM4Q14773 271 aa9.45□□□□□ -0.9
COL6A3-211ENST00000491233 ESRGQ1W209 222 aa9.45□□□□□ -0.9
COL6A3-211ENST00000491233 TTC32Q5I0X7 151 aa9.45□□□□□ -0.9
COL6A3-211ENST00000491233 EIF4E3Q8N5X7 224 aaKnown RBP9.45□□□□□ -0.9
COL6A3-211ENST00000491233 OR5C1Q8NGR4 320 aa9.45□□□□□ -0.9
COL6A3-211ENST00000491233 ENKURQ8TC29 256 aa9.45□□□□□ -0.9
COL6A3-211ENST00000491233 LINC00477Q96M19 166 aa9.45□□□□□ -0.9
COL6A3-211ENST00000491233 UPK3BQ9BT76 320 aa9.45□□□□□ -0.9
COL6A3-211ENST00000491233 TRGV2A0A075B6R0 118 aa9.44□□□□□ -0.9
COL6A3-211ENST00000491233 TRGV1A0A0A0MS02 117 aa9.44□□□□□ -0.9
COL6A3-211ENST00000491233 H3BNG1 76 aa9.44□□□□□ -0.9
COL6A3-211ENST00000491233 CRISP2P16562 243 aa9.44□□□□□ -0.9
COL6A3-211ENST00000491233 RNASE4P34096 147 aaKnown RBP9.44□□□□□ -0.9
COL6A3-211ENST00000491233 LRRC37A5PQ49AS3 106 aa9.44□□□□□ -0.9
COL6A3-211ENST00000491233 PRR9Q5T870 116 aa9.44□□□□□ -0.9
COL6A3-211ENST00000491233 FAM122CQ6P4D5 195 aa9.44□□□□□ -0.9
COL6A3-211ENST00000491233 FAM167A-AS1Q96KT0 104 aa9.44□□□□□ -0.9
COL6A3-211ENST00000491233 LINC00467Q9BRT7 94 aa9.44□□□□□ -0.9
COL6A3-211ENST00000491233 KRTAP3-3Q9BYR6 98 aa9.44□□□□□ -0.9
COL6A3-211ENST00000491233 KRTAP3-2Q9BYR7 98 aa9.44□□□□□ -0.9
COL6A3-211ENST00000491233 Q9H3A6 140 aa9.44□□□□□ -0.9
COL6A3-211ENST00000491233 OR5AC2Q9NZP5 309 aa9.44□□□□□ -0.9
COL6A3-211ENST00000491233 FUT9Q9Y231 359 aa9.44□□□□□ -0.9
COL6A3-211ENST00000491233 MRPS16Q9Y3D3 137 aaKnown RBP9.44□□□□□ -0.9
COL6A3-211ENST00000491233 E5RGE8 158 aa9.43□□□□□ -0.9
COL6A3-211ENST00000491233 ZNF324O75467 553 aaPredicted RBP9.43□□□□□ -0.9
COL6A3-211ENST00000491233 GPX1P07203 203 aa9.43□□□□□ -0.9
COL6A3-211ENST00000491233 TCL1AP56279 114 aa9.43□□□□□ -0.9
COL6A3-211ENST00000491233 ANXA2RQ3ZCQ2 193 aa9.43□□□□□ -0.9
COL6A3-211ENST00000491233 TMEM78Q5T7P6 136 aa9.43□□□□□ -0.9
COL6A3-211ENST00000491233 C9orf47Q6ZRZ4 202 aa9.43□□□□□ -0.9
COL6A3-211ENST00000491233 LINC00299Q6ZSB3 139 aa9.43□□□□□ -0.9
COL6A3-211ENST00000491233 ZFAND2AQ8N6M9 145 aa9.43□□□□□ -0.9
COL6A3-211ENST00000491233 S100ZQ8WXG8 99 aa9.43□□□□□ -0.9
COL6A3-211ENST00000491233 VSIG2Q96IQ7 327 aa9.43□□□□□ -0.9
COL6A3-211ENST00000491233 C18orf15Q96N68 181 aa9.43□□□□□ -0.9
COL6A3-211ENST00000491233 VGLL1Q99990 258 aa9.43□□□□□ -0.9
COL6A3-211ENST00000491233 SLC25A31Q9H0C2 315 aa9.43□□□□□ -0.9
COL6A3-211ENST00000491233 KCNIP2Q9NS61 270 aa9.43□□□□□ -0.9
COL6A3-211ENST00000491233 KLF12Q9Y4X4 402 aa9.43□□□□□ -0.9
COL6A3-211ENST00000491233 ABCA13Q86UQ4 5058 aa9.43□□□□□ -0.9
COL6A3-211ENST00000491233 HSPG2P98160 4391 aa9.42□□□□□ -0.9
COL6A3-211ENST00000491233 A0A096LPF7 62 aa9.42□□□□□ -0.9
COL6A3-211ENST00000491233 PHYHIPLQ96FC7 376 aa9.42□□□□□ -0.9
COL6A3-211ENST00000491233 MRPL32Q9BYC8 188 aaKnown RBP9.42□□□□□ -0.9
COL6A3-211ENST00000491233 KRTAP4-5Q9BYR2 181 aa9.42□□□□□ -0.9
COL6A3-211ENST00000491233 NMES1Q9C002 83 aa9.42□□□□□ -0.9
COL6A3-211ENST00000491233 WDR61Q9GZS3 305 aaKnown RBP9.42□□□□□ -0.9
COL6A3-211ENST00000491233 OR51M1Q9H341 326 aa9.42□□□□□ -0.9
COL6A3-211ENST00000491233 H0YIZ8 118 aa9.41□□□□□ -0.9
COL6A3-211ENST00000491233 RGS13O14921 159 aa9.41□□□□□ -0.9
COL6A3-211ENST00000491233 SPINK4O60575 86 aa9.41□□□□□ -0.9
COL6A3-211ENST00000491233 NMBP08949 121 aa9.41□□□□□ -0.9
COL6A3-211ENST00000491233 OR10J4P0C629 311 aa9.41□□□□□ -0.9
COL6A3-211ENST00000491233 NBEAP1P0C6P0 100 aa9.41□□□□□ -0.9
COL6A3-211ENST00000491233 IBA57Q5T440 356 aaKnown RBP9.41□□□□□ -0.9
COL6A3-211ENST00000491233 Q6ZQT7 251 aa9.41□□□□□ -0.9
COL6A3-211ENST00000491233 Q8TAT8 98 aa9.41□□□□□ -0.9
COL6A3-211ENST00000491233 FXYD5Q96DB9 178 aa9.41□□□□□ -0.9
COL6A3-211ENST00000491233 PAXXQ9BUH6 204 aa9.41□□□□□ -0.9
COL6A3-211ENST00000491233 MRPL16Q9NX20 251 aaKnown RBP9.41□□□□□ -0.9
COL6A3-211ENST00000491233 ZNF492Q9P255 531 aa9.41□□□□□ -0.9
COL6A3-211ENST00000491233 TP53TG3Q9ULZ0 132 aa9.41□□□□□ -0.9
COL6A3-211ENST00000491233 LRP1BQ9NZR2 4599 aa9.41□□□□□ -0.9
COL6A3-211ENST00000491233 IGHV1OR15-1A0A075B7D0 117 aa9.4□□□□□ -0.9
COL6A3-211ENST00000491233 A0A1W2PPQ1 181 aa9.4□□□□□ -0.9
COL6A3-211ENST00000491233 OR7C2O60412 319 aa9.4□□□□□ -0.9
COL6A3-211ENST00000491233 UPK1BO75841 260 aa9.4□□□□□ -0.9
COL6A3-211ENST00000491233 CDK2AP2O75956 126 aa9.4□□□□□ -0.9
COL6A3-211ENST00000491233 IGHV3-53P01767 116 aa9.4□□□□□ -0.9
COL6A3-211ENST00000491233 SPATA12Q7Z6I5 190 aa9.4□□□□□ -0.9
COL6A3-211ENST00000491233 ARPC5LQ9BPX5 153 aa9.4□□□□□ -0.9
COL6A3-211ENST00000491233 C17orf112F2Z3M2 114 aa9.39□□□□□ -0.91
COL6A3-211ENST00000491233 PRAF2O60831 178 aa9.39□□□□□ -0.91
COL6A3-211ENST00000491233 ZNF138P52744 262 aa9.39□□□□□ -0.91
COL6A3-211ENST00000491233 UBE2L3P68036 154 aaKnown RBP9.39□□□□□ -0.91
COL6A3-211ENST00000491233 ST6GAL2Q96JF0 529 aa9.39□□□□□ -0.91
COL6A3-211ENST00000491233 INMT-MINDY4F8WBC2 141 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms