RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 ZNRD1Q9P1U0 126 aa4.55□□□□□ -1.68
VPS41-214ENST00000490924 LENEPQ9Y5L5 61 aa4.55□□□□□ -1.68
VPS41-214ENST00000490924 NAV3Q8IVL0 2385 aa4.54□□□□□ -1.68
VPS41-214ENST00000490924 IGHV4-4A0A075B6R2 117 aa4.54□□□□□ -1.68
VPS41-214ENST00000490924 TMEM189A5PLL7 270 aa4.54□□□□□ -1.68
VPS41-214ENST00000490924 E7EQL1 145 aa4.54□□□□□ -1.68
VPS41-214ENST00000490924 LINC01619G3V211 115 aa4.54□□□□□ -1.68
VPS41-214ENST00000490924 ENSAO43768 121 aaKnown RBP4.54□□□□□ -1.68
VPS41-214ENST00000490924 BRI3O95415 125 aa4.54□□□□□ -1.68
VPS41-214ENST00000490924 PLAUP00749 431 aa4.54□□□□□ -1.68
VPS41-214ENST00000490924 PCP4P48539 62 aa4.54□□□□□ -1.68
VPS41-214ENST00000490924 VAMP3Q15836 100 aa4.54□□□□□ -1.68
VPS41-214ENST00000490924 MAJINQ3KP22 176 aa4.54□□□□□ -1.68
VPS41-214ENST00000490924 ZNF672Q499Z4 452 aaPredicted RBP4.54□□□□□ -1.68
VPS41-214ENST00000490924 OCIAD2Q56VL3 154 aa4.54□□□□□ -1.68
VPS41-214ENST00000490924 C2orf91Q6ZV80 131 aa4.54□□□□□ -1.68
VPS41-214ENST00000490924 ATOH7Q8N100 152 aa4.54□□□□□ -1.68
VPS41-214ENST00000490924 Q8N6K4 173 aa4.54□□□□□ -1.68
VPS41-214ENST00000490924 TIMD4Q96H15 378 aa4.54□□□□□ -1.68
VPS41-214ENST00000490924 C16orf92Q96LL3 132 aa4.54□□□□□ -1.68
VPS41-214ENST00000490924 PRELID3AQ96N28 172 aa4.54□□□□□ -1.68
VPS41-214ENST00000490924 PRR25Q96S07 402 aa4.54□□□□□ -1.68
VPS41-214ENST00000490924 ASCL2Q99929 193 aa4.54□□□□□ -1.68
VPS41-214ENST00000490924 SLC50A1Q9BRV3 221 aa4.54□□□□□ -1.68
VPS41-214ENST00000490924 ZMAT4Q9H898 229 aa4.54□□□□□ -1.68
VPS41-214ENST00000490924 SIGLEC8Q9NYZ4 499 aa4.54□□□□□ -1.68
VPS41-214ENST00000490924 DMXL2Q8TDJ6 3036 aa4.54□□□□□ -1.68
VPS41-214ENST00000490924 FREM2Q5SZK8 3169 aa4.53□□□□□ -1.68
VPS41-214ENST00000490924 A0A096LNJ9 63 aa4.53□□□□□ -1.68
VPS41-214ENST00000490924 MUC21A0A0G2JKD1 596 aa4.53□□□□□ -1.68
VPS41-214ENST00000490924 TRBV7-9A0A0J9YWB2 115 aa4.53□□□□□ -1.68
VPS41-214ENST00000490924 MUC21A0A140T8X8 626 aa4.53□□□□□ -1.68
VPS41-214ENST00000490924 SPAARA0A1B0GVQ0 90 aa4.53□□□□□ -1.68
VPS41-214ENST00000490924 A1L4Q6 167 aa4.53□□□□□ -1.68
VPS41-214ENST00000490924 GNG7O60262 68 aa4.53□□□□□ -1.68
VPS41-214ENST00000490924 ATP5LO75964 103 aa4.53□□□□□ -1.68
VPS41-214ENST00000490924 CNIH1O95406 144 aa4.53□□□□□ -1.68
VPS41-214ENST00000490924 IL4P05112 153 aa4.53□□□□□ -1.68
VPS41-214ENST00000490924 EVI2AP22794 236 aa4.53□□□□□ -1.68
VPS41-214ENST00000490924 CRIP1P50238 77 aa4.53□□□□□ -1.68
VPS41-214ENST00000490924 SRSF6Q13247 344 aaKnown RBP4.53□□□□□ -1.68
VPS41-214ENST00000490924 COTL1Q14019 142 aa4.53□□□□□ -1.68
VPS41-214ENST00000490924 TAL2Q16559 108 aa4.53□□□□□ -1.68
VPS41-214ENST00000490924 MUC21Q5SSG8 566 aa4.53□□□□□ -1.68
VPS41-214ENST00000490924 UFSP1Q6NVU6 142 aa4.53□□□□□ -1.68
VPS41-214ENST00000490924 EXOC3-AS1Q8N2X6 119 aa4.53□□□□□ -1.68
VPS41-214ENST00000490924 FER1L6-AS1Q8NA97 138 aa4.53□□□□□ -1.68
VPS41-214ENST00000490924 RNASE8Q8TDE3 154 aaKnown RBP4.53□□□□□ -1.68
VPS41-214ENST00000490924 ARPC1AQ92747 370 aa4.53□□□□□ -1.68
VPS41-214ENST00000490924 FBXL15Q9H469 300 aa4.53□□□□□ -1.68
VPS41-214ENST00000490924 CST9LQ9H4G1 147 aa4.53□□□□□ -1.68
VPS41-214ENST00000490924 C21orf62Q9NYP8 219 aa4.53□□□□□ -1.68
VPS41-214ENST00000490924 URB1O60287 2271 aaKnown RBP4.53□□□□□ -1.68
VPS41-214ENST00000490924 TENM4Q6N022 2769 aa4.52□□□□□ -1.69
VPS41-214ENST00000490924 TRAV8-1A0A0A6YYK1 113 aa4.52□□□□□ -1.69
VPS41-214ENST00000490924 hDV102S1A0JD36 115 aa4.52□□□□□ -1.69
VPS41-214ENST00000490924 FABP5P3A8MUU1 101 aa4.52□□□□□ -1.69
VPS41-214ENST00000490924 D6R8Y8 96 aa4.52□□□□□ -1.69
VPS41-214ENST00000490924 TIMM23O14925 209 aa4.52□□□□□ -1.69
VPS41-214ENST00000490924 ZNF207O43670 478 aaKnown RBP4.52□□□□□ -1.69
VPS41-214ENST00000490924 SH2D1AO60880 128 aa4.52□□□□□ -1.69
VPS41-214ENST00000490924 COL8A2P25067 703 aa4.52□□□□□ -1.69
VPS41-214ENST00000490924 FCER1GP30273 86 aa4.52□□□□□ -1.69
VPS41-214ENST00000490924 MRPL51Q4U2R6 128 aaKnown RBP4.52□□□□□ -1.69
VPS41-214ENST00000490924 RUSC1-AS1Q66K80 236 aa4.52□□□□□ -1.69
VPS41-214ENST00000490924 LYZL1Q6UWQ5 148 aa4.52□□□□□ -1.69
VPS41-214ENST00000490924 GFRALQ6UXV0 394 aa4.52□□□□□ -1.69
VPS41-214ENST00000490924 ADAMTSL5Q6ZMM2 481 aa4.52□□□□□ -1.69
VPS41-214ENST00000490924 LINC00173Q6ZV60 143 aa4.52□□□□□ -1.69
VPS41-214ENST00000490924 IL17RELQ6ZVW7 336 aa4.52□□□□□ -1.69
VPS41-214ENST00000490924 PRIMA1Q86XR5 153 aa4.52□□□□□ -1.69
VPS41-214ENST00000490924 BCL6BQ8N143 479 aaPredicted RBP4.52□□□□□ -1.69
VPS41-214ENST00000490924 IFI27L1Q96BM0 104 aa4.52□□□□□ -1.69
VPS41-214ENST00000490924 MAP1LC3AQ9H492 121 aa4.52□□□□□ -1.69
VPS41-214ENST00000490924 RAI1Q7Z5J4 1906 aaPredicted RBP4.52□□□□□ -1.69
VPS41-214ENST00000490924 IGF2RP11717 2491 aa4.51□□□□□ -1.69
VPS41-214ENST00000490924 PRRC2CQ9Y520 2896 aaKnown RBP4.51□□□□□ -1.69
VPS41-214ENST00000490924 TRAV12-1A0A0B4J245 112 aa4.51□□□□□ -1.69
VPS41-214ENST00000490924 CENPVL3A0A0U1RRI6 287 aa4.51□□□□□ -1.69
VPS41-214ENST00000490924 GAGE12BA1L429 117 aa4.51□□□□□ -1.69
VPS41-214ENST00000490924 TMEM8BA6NDV4 472 aa4.51□□□□□ -1.69
VPS41-214ENST00000490924 GAGE10A6NGK3 116 aa4.51□□□□□ -1.69
VPS41-214ENST00000490924 CBY3A6NI87 242 aa4.51□□□□□ -1.69
VPS41-214ENST00000490924 K7EP34 96 aa4.51□□□□□ -1.69
VPS41-214ENST00000490924 PPP1R17O96001 155 aa4.51□□□□□ -1.69
VPS41-214ENST00000490924 IGHV3-48P01763 117 aa4.51□□□□□ -1.69
VPS41-214ENST00000490924 SLC25A16P16260 332 aa4.51□□□□□ -1.69
VPS41-214ENST00000490924 CNTFRP26992 372 aa4.51□□□□□ -1.69
VPS41-214ENST00000490924 CKS2P33552 79 aa4.51□□□□□ -1.69
VPS41-214ENST00000490924 IFI27P40305 119 aaPredicted RBP4.51□□□□□ -1.69
VPS41-214ENST00000490924 CRIP2P52943 208 aaPredicted RBP4.51□□□□□ -1.69
VPS41-214ENST00000490924 RPL32P62910 135 aaKnown RBP4.51□□□□□ -1.69
VPS41-214ENST00000490924 CACNG7P62955 275 aa4.51□□□□□ -1.69
VPS41-214ENST00000490924 KLF17Q5JT82 389 aaPredicted RBP4.51□□□□□ -1.69
VPS41-214ENST00000490924 SAMD13Q5VXD3 122 aa4.51□□□□□ -1.69
VPS41-214ENST00000490924 Q8NA96 180 aa4.51□□□□□ -1.69
VPS41-214ENST00000490924 FAM110DQ8TAY7 271 aaPredicted RBP4.51□□□□□ -1.69
VPS41-214ENST00000490924 AP1S3Q96PC3 154 aa4.51□□□□□ -1.69
VPS41-214ENST00000490924 BBC3Q96PG8 261 aaPredicted RBP4.51□□□□□ -1.69
VPS41-214ENST00000490924 TM2D2Q9BX73 214 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms