RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 SYNPRQ8TBG9 265 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 SCGB1C1Q8TD33 95 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 KLK6Q92876 244 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 CARD19Q96LW7 228 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 MCEEQ96PE7 176 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 ZNF670Q9BS34 389 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 SLC25A39Q9BZJ4 359 aaPredicted RBP1.47□□□□□ -2.17
HMGB1-208ENST00000490788 ULBP3Q9BZM4 244 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 NMES1Q9C002 83 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 COMMD5Q9GZQ3 224 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 TMEM222Q9H0R3 208 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 SH3BGRL3Q9H299 93 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 Q9H3A6 140 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 ZNF702PQ9H963 129 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 FGF20Q9NP95 211 aaPredicted RBP1.47□□□□□ -2.17
HMGB1-208ENST00000490788 ACER3Q9NUN7 267 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 C21orf62Q9NYP8 219 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 IL36GQ9NZH8 169 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 MTFP1Q9UDX5 166 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 MCTS1Q9ULC4 181 aaKnown RBP1.47□□□□□ -2.17
HMGB1-208ENST00000490788 RCL1Q9Y2P8 373 aaKnown RBP1.47□□□□□ -2.17
HMGB1-208ENST00000490788 KLK5Q9Y337 293 aaPredicted RBP1.47□□□□□ -2.17
HMGB1-208ENST00000490788 YTHDF2Q9Y5A9 579 aaKnown RBP1.47□□□□□ -2.17
HMGB1-208ENST00000490788 IER3IP1Q9Y5U9 82 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 HEBP2Q9Y5Z4 205 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 PXMP4Q9Y6I8 212 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 ARL2-SNX15V9GYD0 113 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 TENM2Q9NT68 2774 aa1.47□□□□□ -2.17
HMGB1-208ENST00000490788 ZNF638Q14966 1978 aaKnown RBP1.47□□□□□ -2.17
HMGB1-208ENST00000490788 POLEQ07864 2286 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 PLXNA2O75051 1894 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 A0A0A6YYD5 115 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 TRAV1-2A0A0B4J238 106 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 TRAV5A0A0B4J249 113 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 SMIM28A0A1B0GU29 152 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 A0A1B0GWB2 263 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 PINLYPA6NC86 204 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 ARRDC5A6NEK1 342 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 OOSP1A8MZH6 123 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 SYS1-DBNDD2H3BUS1 97 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 K7N7A8 449 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 CDC42EP2O14613 210 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 EFNA2O43921 213 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 ZNF324O75467 553 aaPredicted RBP1.46□□□□□ -2.18
HMGB1-208ENST00000490788 STK17BO94768 372 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 CD3DP04234 171 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 SMIM13P0DJ93 91 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 RBMY1CP0DJD4 496 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 ZNF708P17019 499 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 CBLN1P23435 193 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 IL3RAP26951 378 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 CNTFRP26992 372 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 AQP1P29972 269 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 SSR2P43308 183 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 MAGEA5P43359 124 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 KIR2DS2P43631 304 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 NMUP48645 174 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 PSMB3P49720 205 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 SSR4P51571 173 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 FBXW4P57775 412 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 TAS2R46P59540 309 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 PFN3P60673 137 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 RPL31P62899 125 aaKnown RBP1.46□□□□□ -2.18
HMGB1-208ENST00000490788 EWSR1Q01844 656 aaKnown RBP eCLIP1.46□□□□□ -2.18
HMGB1-208ENST00000490788 Q0VG73 95 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 C1orf61Q13536 156 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 GGTLC2Q14390 218 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 SP6Q3SY56 376 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 NMSQ5H8A3 153 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 IBA57Q5T440 356 aaKnown RBP1.46□□□□□ -2.18
HMGB1-208ENST00000490788 LYRM7Q5U5X0 104 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 ZNF322Q6U7Q0 402 aaPredicted RBP1.46□□□□□ -2.18
HMGB1-208ENST00000490788 STAC2Q6ZMT1 411 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 GOLT1AQ6ZVE7 132 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 FAM231DQ6ZW35 169 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 SSX8Q7RTT4 187 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 BPIFA4PQ86YQ2 179 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 ZNF695Q8IW36 515 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 SGPP2Q8IWX5 399 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 MKXQ8IYA7 352 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 ZCCHC24Q8N2G6 241 aaKnown RBP1.46□□□□□ -2.18
HMGB1-208ENST00000490788 GATD1Q8NB37 220 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 ZFP62Q8NB50 900 aaPredicted RBP1.46□□□□□ -2.18
HMGB1-208ENST00000490788 OR1L1Q8NH94 360 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 CLDND2Q8NHS1 167 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 ZNF502Q8TBZ5 544 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 MRPL30Q8TCC3 161 aaKnown RBP1.46□□□□□ -2.18
HMGB1-208ENST00000490788 RPS4Y2Q8TD47 263 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 SLC37A2Q8TED4 501 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 MAL2Q969L2 176 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 BORCS7Q96B45 105 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 DDIT4LQ96D03 193 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 NEURL3Q96EH8 262 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 SLC25A44Q96H78 314 aaPredicted RBP1.46□□□□□ -2.18
HMGB1-208ENST00000490788 KCNS1Q96KK3 526 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 C18orf15Q96N68 181 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 SMIM14Q96QK8 99 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 PMCHL2Q9BQD1 86 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 TMEM59Q9BXS4 323 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 IFI27L2Q9H2X8 130 aa1.46□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 98.3 ms