RNA–Protein interactions for RNA: ENST00000490207.5

SMC4-222, Transcript of structural maintenance of chromosomes 4, human

TSL 5

Gene SMC4, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMC4-222	ENST00000490207	UBE2DNL	Q8IWF7	75 aa		13.95	□□□□□ -0.18
SMC4-222	ENST00000490207	NOP10	Q9NPE3	64 aa	Known RBP	13.95	□□□□□ -0.18
SMC4-222	ENST00000490207	C7orf71	A4D174	169 aa		13.94	□□□□□ -0.18
SMC4-222	ENST00000490207	ATP5G1	P05496	136 aa		13.94	□□□□□ -0.18
SMC4-222	ENST00000490207	ATP5G3	P48201	142 aa		13.94	□□□□□ -0.18
SMC4-222	ENST00000490207	C9orf47	Q6ZRZ4	202 aa		13.94	□□□□□ -0.18
SMC4-222	ENST00000490207	ZNF503	Q96F45	646 aa		13.94	□□□□□ -0.18
SMC4-222	ENST00000490207	PYGO2	Q9BRQ0	406 aa		13.94	□□□□□ -0.18
SMC4-222	ENST00000490207	AGPAT4-IT1	Q9H0P7	198 aa		13.94	□□□□□ -0.18
SMC4-222	ENST00000490207	KLLN	B2CW77	178 aa		13.93	□□□□□ -0.18
SMC4-222	ENST00000490207	TAS2R45	P59539	299 aa		13.93	□□□□□ -0.18
SMC4-222	ENST00000490207	TMEM78	Q5T7P6	136 aa		13.93	□□□□□ -0.18
SMC4-222	ENST00000490207	C15orf53	Q8NAA6	179 aa		13.93	□□□□□ -0.18
SMC4-222	ENST00000490207	FAM19A4	Q96LR4	140 aa		13.93	□□□□□ -0.18
SMC4-222	ENST00000490207	CBY3	A6NI87	242 aa		13.92	□□□□□ -0.18
SMC4-222	ENST00000490207	SNURFL	B1AK76	121 aa		13.92	□□□□□ -0.18
SMC4-222	ENST00000490207		F5H768	121 aa		13.92	□□□□□ -0.18
SMC4-222	ENST00000490207	BTN1A1	Q13410	526 aa		13.92	□□□□□ -0.18
SMC4-222	ENST00000490207	CRISP2	P16562	243 aa		13.91	□□□□□ -0.18
SMC4-222	ENST00000490207	ACOT6	Q3I5F7	207 aa	Predicted RBP	13.91	□□□□□ -0.18
SMC4-222	ENST00000490207	VGLL1	Q99990	258 aa		13.91	□□□□□ -0.18
SMC4-222	ENST00000490207		Q9H3A6	140 aa		13.91	□□□□□ -0.18
SMC4-222	ENST00000490207	EIF3G	O75821	320 aa	Known RBP eCLIP	13.9	□□□□□ -0.18
SMC4-222	ENST00000490207	M6PR	P20645	277 aa		13.9	□□□□□ -0.18
SMC4-222	ENST00000490207	CSN1S1	P47710	185 aa		13.9	□□□□□ -0.18
SMC4-222	ENST00000490207	RAN	P62826	216 aa	Known RBP	13.9	□□□□□ -0.18
SMC4-222	ENST00000490207	CD300C	Q08708	224 aa		13.9	□□□□□ -0.18
SMC4-222	ENST00000490207	LYPD1	Q8N2G4	141 aa		13.9	□□□□□ -0.18
SMC4-222	ENST00000490207	ZNF492	Q9P255	531 aa		13.9	□□□□□ -0.18
SMC4-222	ENST00000490207	DNAH2	Q9P225	4427 aa		13.9	□□□□□ -0.18
SMC4-222	ENST00000490207	HECTD4	Q9Y4D8	3996 aa		13.9	□□□□□ -0.19
SMC4-222	ENST00000490207	NACA	E9PAV3	2078 aa		13.89	□□□□□ -0.19
SMC4-222	ENST00000490207	GPX1	P07203	203 aa		13.89	□□□□□ -0.19
SMC4-222	ENST00000490207	RNASE4	P34096	147 aa	Known RBP	13.89	□□□□□ -0.19
SMC4-222	ENST00000490207	RAB2A	P61019	212 aa		13.89	□□□□□ -0.19
SMC4-222	ENST00000490207	ZNF266	Q14584	549 aa		13.89	□□□□□ -0.19
SMC4-222	ENST00000490207	LINC00612	Q8N6U2	182 aa		13.89	□□□□□ -0.19
SMC4-222	ENST00000490207	AQP10	Q96PS8	301 aa		13.89	□□□□□ -0.19
SMC4-222	ENST00000490207	ZNF324	O75467	553 aa	Predicted RBP	13.88	□□□□□ -0.19
SMC4-222	ENST00000490207	NMB	P08949	121 aa		13.88	□□□□□ -0.19
SMC4-222	ENST00000490207	GIP	P09681	153 aa	Predicted RBP	13.88	□□□□□ -0.19
SMC4-222	ENST00000490207	ZNF138	P52744	262 aa		13.88	□□□□□ -0.19
SMC4-222	ENST00000490207	RNF212	Q495C1	297 aa		13.88	□□□□□ -0.19
SMC4-222	ENST00000490207	PRR9	Q5T870	116 aa		13.88	□□□□□ -0.19
SMC4-222	ENST00000490207	EIF4E3	Q8N5X7	224 aa	Known RBP	13.88	□□□□□ -0.19
SMC4-222	ENST00000490207	ZFAND2A	Q8N6M9	145 aa		13.88	□□□□□ -0.19
SMC4-222	ENST00000490207	ZNF680	Q8NEM1	530 aa		13.88	□□□□□ -0.19
SMC4-222	ENST00000490207		Q8TAT8	98 aa		13.88	□□□□□ -0.19
SMC4-222	ENST00000490207	ASB13	Q8WXK3	278 aa		13.88	□□□□□ -0.19
SMC4-222	ENST00000490207		A0A1W2PPV4	95 aa		13.87	□□□□□ -0.19
SMC4-222	ENST00000490207	GAGE12B	A1L429	117 aa		13.87	□□□□□ -0.19
SMC4-222	ENST00000490207	RBAKDN	A6NC62	111 aa		13.87	□□□□□ -0.19
SMC4-222	ENST00000490207	GAGE7	O76087	117 aa		13.87	□□□□□ -0.19
SMC4-222	ENST00000490207	GAGE12F	P0CL80	117 aa		13.87	□□□□□ -0.19
SMC4-222	ENST00000490207	GAGE12G	P0CL81	117 aa		13.87	□□□□□ -0.19
SMC4-222	ENST00000490207	GAGE12I	P0CL82	117 aa		13.87	□□□□□ -0.19
SMC4-222	ENST00000490207	PQLC2	Q6ZP29	291 aa		13.87	□□□□□ -0.19
SMC4-222	ENST00000490207	HSD17B11	Q8NBQ5	300 aa		13.87	□□□□□ -0.19
SMC4-222	ENST00000490207	LINC00467	Q9BRT7	94 aa		13.87	□□□□□ -0.19
SMC4-222	ENST00000490207		M0R2N4	97 aa		13.86	□□□□□ -0.19
SMC4-222	ENST00000490207	NUDT3	O95989	172 aa		13.86	□□□□□ -0.19
SMC4-222	ENST00000490207	DAZ2	Q13117	558 aa	Known RBP	13.86	□□□□□ -0.19
SMC4-222	ENST00000490207	OR10G4	Q8NGN3	311 aa		13.86	□□□□□ -0.19
SMC4-222	ENST00000490207	OR10G9	Q8NGN4	311 aa		13.86	□□□□□ -0.19
SMC4-222	ENST00000490207	OR10G7	Q8NGN6	311 aa		13.86	□□□□□ -0.19
SMC4-222	ENST00000490207	DNAH17	Q9UFH2	4485 aa		13.86	□□□□□ -0.19
SMC4-222	ENST00000490207	IGLV2-18	A0A075B6J9	118 aa		13.85	□□□□□ -0.19
SMC4-222	ENST00000490207	TRBV7-9	A0A0J9YWB2	115 aa		13.85	□□□□□ -0.19
SMC4-222	ENST00000490207	ANXA2R	Q3ZCQ2	193 aa		13.85	□□□□□ -0.19
SMC4-222	ENST00000490207		Q5BKY6	102 aa		13.85	□□□□□ -0.19
SMC4-222	ENST00000490207	C11orf72	Q8NBR9	251 aa		13.85	□□□□□ -0.19
SMC4-222	ENST00000490207	ATG101	Q9BSB4	218 aa		13.85	□□□□□ -0.19
SMC4-222	ENST00000490207	OTOR	Q9NRC9	128 aa		13.85	□□□□□ -0.19
SMC4-222	ENST00000490207	GSN-AS1	Q9NRJ2	163 aa		13.85	□□□□□ -0.19
SMC4-222	ENST00000490207	FAT2	Q9NYQ8	4349 aa		13.84	□□□□□ -0.19
SMC4-222	ENST00000490207	DIRC3	C9JPN6	131 aa		13.84	□□□□□ -0.19
SMC4-222	ENST00000490207	RGS13	O14921	159 aa		13.84	□□□□□ -0.19
SMC4-222	ENST00000490207	HMGB3	O15347	200 aa	Known RBP	13.84	□□□□□ -0.19
SMC4-222	ENST00000490207	CDC34	P49427	236 aa	Predicted RBP	13.84	□□□□□ -0.19
SMC4-222	ENST00000490207	RGS21	Q2M5E4	152 aa		13.84	□□□□□ -0.19
SMC4-222	ENST00000490207	LGALS9B	Q3B8N2	356 aa		13.84	□□□□□ -0.19
SMC4-222	ENST00000490207		Q6ZTI0	123 aa		13.84	□□□□□ -0.19
SMC4-222	ENST00000490207	OR2G3	Q8NGZ4	309 aa		13.84	□□□□□ -0.19
SMC4-222	ENST00000490207	RXFP4	Q8TDU9	374 aa		13.84	□□□□□ -0.19
SMC4-222	ENST00000490207	HYLS1	Q96M11	299 aa		13.84	□□□□□ -0.19
SMC4-222	ENST00000490207	PSMG3	Q9BT73	122 aa	Predicted RBP	13.84	□□□□□ -0.19
SMC4-222	ENST00000490207	RPH3AL	Q9UNE2	315 aa		13.84	□□□□□ -0.19
SMC4-222	ENST00000490207	IGHV1OR15-1	A0A075B7D0	117 aa		13.83	□□□□□ -0.2
SMC4-222	ENST00000490207	ATP6V0C	P27449	155 aa		13.83	□□□□□ -0.2
SMC4-222	ENST00000490207	OR5I1	Q13606	314 aa		13.83	□□□□□ -0.2
SMC4-222	ENST00000490207	FAM74A1	Q5RGS3	127 aa		13.83	□□□□□ -0.2
SMC4-222	ENST00000490207	CMTM2	Q8TAZ6	248 aa		13.83	□□□□□ -0.2
SMC4-222	ENST00000490207	FXYD6-FXYD2	A0A087WZ82	144 aa		13.82	□□□□□ -0.2
SMC4-222	ENST00000490207	PGP	A6NDG6	321 aa		13.82	□□□□□ -0.2
SMC4-222	ENST00000490207	ARL14EPL	P0DKL9	152 aa		13.82	□□□□□ -0.2
SMC4-222	ENST00000490207	TCL1A	P56279	114 aa		13.82	□□□□□ -0.2
SMC4-222	ENST00000490207	FAM3B	P58499	235 aa	Predicted RBP	13.82	□□□□□ -0.2
SMC4-222	ENST00000490207		Q6ZQT7	251 aa		13.82	□□□□□ -0.2
SMC4-222	ENST00000490207	LINC00336	Q6ZUF6	198 aa		13.82	□□□□□ -0.2
SMC4-222	ENST00000490207	INO80E	Q8NBZ0	244 aa	Predicted RBP	13.82	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 17 ms