RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 SLC39A9Q9NUM3 307 aa8.51□□□□□ -1.05
CPSF3-204ENST00000489403 FAM25EA8MYX2 175 aa8.5□□□□□ -1.05
CPSF3-204ENST00000489403 SPINK4O60575 86 aa8.5□□□□□ -1.05
CPSF3-204ENST00000489403 NDUFB4O95168 129 aa8.5□□□□□ -1.05
CPSF3-204ENST00000489403 BAXQ07812 192 aa8.5□□□□□ -1.05
CPSF3-204ENST00000489403 CD300CQ08708 224 aa8.5□□□□□ -1.05
CPSF3-204ENST00000489403 ANXA2RQ3ZCQ2 193 aa8.5□□□□□ -1.05
CPSF3-204ENST00000489403 EIF4E3Q8N5X7 224 aaKnown RBP8.5□□□□□ -1.05
CPSF3-204ENST00000489403 FUT9Q9Y231 359 aa8.5□□□□□ -1.05
CPSF3-204ENST00000489403 KLF12Q9Y4X4 402 aa8.5□□□□□ -1.05
CPSF3-204ENST00000489403 C5orf51A6NDU8 294 aa8.49□□□□□ -1.05
CPSF3-204ENST00000489403 PLA2G10O15496 165 aa8.49□□□□□ -1.05
CPSF3-204ENST00000489403 PYYP10082 97 aa8.49□□□□□ -1.05
CPSF3-204ENST00000489403 TCL1AP56279 114 aa8.49□□□□□ -1.05
CPSF3-204ENST00000489403 EXOC3-AS1Q8N2X6 119 aa8.49□□□□□ -1.05
CPSF3-204ENST00000489403 C12orf45Q8N5I9 185 aaPredicted RBP8.49□□□□□ -1.05
CPSF3-204ENST00000489403 LINC00477Q96M19 166 aa8.49□□□□□ -1.05
CPSF3-204ENST00000489403 SEC22CQ9BRL7 303 aa8.49□□□□□ -1.05
CPSF3-204ENST00000489403 AGPAT4-IT1Q9H0P7 198 aa8.49□□□□□ -1.05
CPSF3-204ENST00000489403 TMEM14CQ9P0S9 112 aa8.49□□□□□ -1.05
CPSF3-204ENST00000489403 PRELID1Q9Y255 219 aa8.49□□□□□ -1.05
CPSF3-204ENST00000489403 IGSF23A1L1A6 192 aa8.48□□□□□ -1.05
CPSF3-204ENST00000489403 SIVA1O15304 175 aa8.48□□□□□ -1.05
CPSF3-204ENST00000489403 TCRBP04435 133 aa8.48□□□□□ -1.05
CPSF3-204ENST00000489403 HIST1H1EP10412 219 aaKnown RBP8.48□□□□□ -1.05
CPSF3-204ENST00000489403 CRISP2P16562 243 aa8.48□□□□□ -1.05
CPSF3-204ENST00000489403 FGF7P21781 194 aa8.48□□□□□ -1.05
CPSF3-204ENST00000489403 S100A11P31949 105 aa8.48□□□□□ -1.05
CPSF3-204ENST00000489403 FUSP35637 526 aaKnown RBP eCLIP8.48□□□□□ -1.05
CPSF3-204ENST00000489403 SULT1A1P50225 295 aa8.48□□□□□ -1.05
CPSF3-204ENST00000489403 PDE6HQ13956 83 aa8.48□□□□□ -1.05
CPSF3-204ENST00000489403 IBA57Q5T440 356 aaKnown RBP8.48□□□□□ -1.05
CPSF3-204ENST00000489403 PRR9Q5T870 116 aa8.48□□□□□ -1.05
CPSF3-204ENST00000489403 TMEM252Q8N6L7 170 aa8.48□□□□□ -1.05
CPSF3-204ENST00000489403 CHAC2Q8WUX2 184 aa8.48□□□□□ -1.05
CPSF3-204ENST00000489403 C2orf50Q96LR7 162 aa8.48□□□□□ -1.05
CPSF3-204ENST00000489403 LYRM2Q9NU23 88 aaPredicted RBP8.48□□□□□ -1.05
CPSF3-204ENST00000489403 TP53TG3Q9ULZ0 132 aa8.48□□□□□ -1.05
CPSF3-204ENST00000489403 TIMM9Q9Y5J7 89 aa8.48□□□□□ -1.05
CPSF3-204ENST00000489403 ICOSQ9Y6W8 199 aa8.48□□□□□ -1.05
CPSF3-204ENST00000489403 TRAV6A0A075B6T7 132 aa8.47□□□□□ -1.05
CPSF3-204ENST00000489403 IGKV2-40A0A087WW87 121 aaPredicted RBP8.47□□□□□ -1.05
CPSF3-204ENST00000489403 PAX4O43316 350 aa8.47□□□□□ -1.05
CPSF3-204ENST00000489403 LYRM1O43325 122 aa8.47□□□□□ -1.05
CPSF3-204ENST00000489403 MPDU1O75352 247 aa8.47□□□□□ -1.05
CPSF3-204ENST00000489403 NXPH4O95158 308 aa8.47□□□□□ -1.05
CPSF3-204ENST00000489403 IGKV2D-40P01614 121 aaPredicted RBP8.47□□□□□ -1.05
CPSF3-204ENST00000489403 IGHV3-53P01767 116 aa8.47□□□□□ -1.05
CPSF3-204ENST00000489403 PVALBP20472 110 aaPredicted RBP8.47□□□□□ -1.05
CPSF3-204ENST00000489403 RNASE4P34096 147 aaKnown RBP8.47□□□□□ -1.05
CPSF3-204ENST00000489403 S100A10P60903 97 aa8.47□□□□□ -1.05
CPSF3-204ENST00000489403 RAB32Q13637 225 aa8.47□□□□□ -1.05
CPSF3-204ENST00000489403 GCSAMLQ5JQS6 135 aa8.47□□□□□ -1.05
CPSF3-204ENST00000489403 Q6ZQT7 251 aa8.47□□□□□ -1.05
CPSF3-204ENST00000489403 C9orf47Q6ZRZ4 202 aa8.47□□□□□ -1.05
CPSF3-204ENST00000489403 ZFAND2AQ8N6M9 145 aa8.47□□□□□ -1.05
CPSF3-204ENST00000489403 BLNKQ8WV28 456 aa8.47□□□□□ -1.05
CPSF3-204ENST00000489403 ST6GAL2Q96JF0 529 aa8.47□□□□□ -1.05
CPSF3-204ENST00000489403 SLC25A2Q9BXI2 301 aa8.47□□□□□ -1.05
CPSF3-204ENST00000489403 MRPL16Q9NX20 251 aaKnown RBP8.47□□□□□ -1.05
CPSF3-204ENST00000489403 TNFRSF18Q9Y5U5 241 aa8.47□□□□□ -1.05
CPSF3-204ENST00000489403 RGS13O14921 159 aa8.46□□□□□ -1.06
CPSF3-204ENST00000489403 GPX1P07203 203 aa8.46□□□□□ -1.06
CPSF3-204ENST00000489403 HBG1P69891 147 aa8.46□□□□□ -1.06
CPSF3-204ENST00000489403 HBG2P69892 147 aa8.46□□□□□ -1.06
CPSF3-204ENST00000489403 IL15RAQ13261 267 aa8.46□□□□□ -1.06
CPSF3-204ENST00000489403 ICAM4Q14773 271 aa8.46□□□□□ -1.06
CPSF3-204ENST00000489403 FAM122CQ6P4D5 195 aa8.46□□□□□ -1.06
CPSF3-204ENST00000489403 STX12Q86Y82 276 aa8.46□□□□□ -1.06
CPSF3-204ENST00000489403 VGLL1Q99990 258 aa8.46□□□□□ -1.06
CPSF3-204ENST00000489403 AAMDCQ9H7C9 122 aa8.46□□□□□ -1.06
CPSF3-204ENST00000489403 NUDT15Q9NV35 164 aa8.46□□□□□ -1.06
CPSF3-204ENST00000489403 PRO0255Q9UI72 69 aa8.46□□□□□ -1.06
CPSF3-204ENST00000489403 HERC1Q15751 4861 aa8.46□□□□□ -1.06
CPSF3-204ENST00000489403 IGHV1OR15-1A0A075B7D0 117 aa8.45□□□□□ -1.06
CPSF3-204ENST00000489403 EPM2AB3EWF7 344 aa8.45□□□□□ -1.06
CPSF3-204ENST00000489403 NMBP08949 121 aa8.45□□□□□ -1.06
CPSF3-204ENST00000489403 CRYBA4P53673 196 aa8.45□□□□□ -1.06
CPSF3-204ENST00000489403 ERVFC1-1P60608 527 aa8.45□□□□□ -1.06
CPSF3-204ENST00000489403 ATP6V1FQ16864 119 aa8.45□□□□□ -1.06
CPSF3-204ENST00000489403 TMEM78Q5T7P6 136 aa8.45□□□□□ -1.06
CPSF3-204ENST00000489403 FAM167A-AS1Q96KT0 104 aa8.45□□□□□ -1.06
CPSF3-204ENST00000489403 NPCDR1Q9BY65 106 aa8.45□□□□□ -1.06
CPSF3-204ENST00000489403 GPN1Q9HCN4 374 aaPredicted RBP8.45□□□□□ -1.06
CPSF3-204ENST00000489403 PGPEP1Q9NXJ5 209 aa8.45□□□□□ -1.06
CPSF3-204ENST00000489403 ZNF492Q9P255 531 aa8.45□□□□□ -1.06
CPSF3-204ENST00000489403 DNAH10OSP0CZ25 163 aa8.44□□□□□ -1.06
CPSF3-204ENST00000489403 XGP55808 180 aa8.44□□□□□ -1.06
CPSF3-204ENST00000489403 FHL2Q14192 279 aa8.44□□□□□ -1.06
CPSF3-204ENST00000489403 LYPD5Q6UWN5 251 aa8.44□□□□□ -1.06
CPSF3-204ENST00000489403 MIR17HGQ75NE6 70 aa8.44□□□□□ -1.06
CPSF3-204ENST00000489403 ARPC5LQ9BPX5 153 aa8.44□□□□□ -1.06
CPSF3-204ENST00000489403 EREGO14944 169 aa8.43□□□□□ -1.06
CPSF3-204ENST00000489403 PRAF2O60831 178 aa8.43□□□□□ -1.06
CPSF3-204ENST00000489403 ZNF415Q09FC8 603 aa8.43□□□□□ -1.06
CPSF3-204ENST00000489403 SLAQ13239 276 aa8.43□□□□□ -1.06
CPSF3-204ENST00000489403 MRPL23Q16540 153 aaKnown RBP8.43□□□□□ -1.06
CPSF3-204ENST00000489403 CDPF1Q6NVV7 123 aa8.43□□□□□ -1.06
CPSF3-204ENST00000489403 LYPD1Q8N2G4 141 aa8.43□□□□□ -1.06
CPSF3-204ENST00000489403 Q8TAT8 98 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 102.7 ms