RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 DEFB130BP0DP73 79 aa9.84□□□□□ -0.83
SYNE1-226ENST00000488376 DEFB130AP0DP74 79 aa9.84□□□□□ -0.83
SYNE1-226ENST00000488376 ACOT6Q3I5F7 207 aaPredicted RBP9.84□□□□□ -0.83
SYNE1-226ENST00000488376 KHDC3LQ587J8 217 aa9.84□□□□□ -0.83
SYNE1-226ENST00000488376 RPL7L1Q6DKI1 246 aaKnown RBP9.84□□□□□ -0.83
SYNE1-226ENST00000488376 C9orf47Q6ZRZ4 202 aa9.84□□□□□ -0.83
SYNE1-226ENST00000488376 OR10G4Q8NGN3 311 aa9.84□□□□□ -0.83
SYNE1-226ENST00000488376 OR10G9Q8NGN4 311 aa9.84□□□□□ -0.83
SYNE1-226ENST00000488376 OR10G7Q8NGN6 311 aa9.84□□□□□ -0.83
SYNE1-226ENST00000488376 TEX48A0A1B0GUV7 120 aa9.83□□□□□ -0.84
SYNE1-226ENST00000488376 KLLNB2CW77 178 aa9.83□□□□□ -0.84
SYNE1-226ENST00000488376 SSX7Q7RTT5 188 aa9.83□□□□□ -0.84
SYNE1-226ENST00000488376 ZFAND2AQ8N6M9 145 aa9.83□□□□□ -0.84
SYNE1-226ENST00000488376 NOP10Q9NPE3 64 aaKnown RBP9.83□□□□□ -0.84
SYNE1-226ENST00000488376 C7orf71A4D174 169 aa9.82□□□□□ -0.84
SYNE1-226ENST00000488376 LYRM9A8MSI8 78 aa9.82□□□□□ -0.84
SYNE1-226ENST00000488376 ZNF324O75467 553 aaPredicted RBP9.82□□□□□ -0.84
SYNE1-226ENST00000488376 RNASE4P34096 147 aaKnown RBP9.82□□□□□ -0.84
SYNE1-226ENST00000488376 TCTAP57738 103 aa9.82□□□□□ -0.84
SYNE1-226ENST00000488376 TAS2R45P59539 299 aa9.82□□□□□ -0.84
SYNE1-226ENST00000488376 ZNF266Q14584 549 aa9.82□□□□□ -0.84
SYNE1-226ENST00000488376 OR2G3Q8NGZ4 309 aa9.82□□□□□ -0.84
SYNE1-226ENST00000488376 TMEM263Q8WUH6 116 aaKnown RBP9.82□□□□□ -0.84
SYNE1-226ENST00000488376 ASB13Q8WXK3 278 aa9.82□□□□□ -0.84
SYNE1-226ENST00000488376 C16orf74Q96GX8 76 aa9.82□□□□□ -0.84
SYNE1-226ENST00000488376 HYLS1Q96M11 299 aa9.82□□□□□ -0.84
SYNE1-226ENST00000488376 LINC00477Q96M19 166 aa9.82□□□□□ -0.84
SYNE1-226ENST00000488376 C20orf144Q9BQM9 153 aa9.82□□□□□ -0.84
SYNE1-226ENST00000488376 A0A1W2PPV4 95 aa9.81□□□□□ -0.84
SYNE1-226ENST00000488376 SLC25A5P05141 298 aaKnown RBP9.81□□□□□ -0.84
SYNE1-226ENST00000488376 ARL14EPLP0DKL9 152 aa9.81□□□□□ -0.84
SYNE1-226ENST00000488376 CRISP2P16562 243 aa9.81□□□□□ -0.84
SYNE1-226ENST00000488376 TMEM88Q6PEY1 159 aa9.81□□□□□ -0.84
SYNE1-226ENST00000488376 INO80EQ8NBZ0 244 aaPredicted RBP9.81□□□□□ -0.84
SYNE1-226ENST00000488376 PSMG3Q9BT73 122 aaPredicted RBP9.81□□□□□ -0.84
SYNE1-226ENST00000488376 NDUFAF3Q9BU61 184 aa9.81□□□□□ -0.84
SYNE1-226ENST00000488376 ZNF492Q9P255 531 aa9.81□□□□□ -0.84
SYNE1-226ENST00000488376 DIRC3C9JPN6 131 aa9.8□□□□□ -0.84
SYNE1-226ENST00000488376 CDC34P49427 236 aaPredicted RBP9.8□□□□□ -0.84
SYNE1-226ENST00000488376 GNG5P63218 68 aa9.8□□□□□ -0.84
SYNE1-226ENST00000488376 TMEM78Q5T7P6 136 aa9.8□□□□□ -0.84
SYNE1-226ENST00000488376 LYPD1Q8N2G4 141 aa9.8□□□□□ -0.84
SYNE1-226ENST00000488376 RAB24Q969Q5 203 aa9.8□□□□□ -0.84
SYNE1-226ENST00000488376 TP53TG3Q9ULZ0 132 aa9.8□□□□□ -0.84
SYNE1-226ENST00000488376 RPH3ALQ9UNE2 315 aa9.8□□□□□ -0.84
SYNE1-226ENST00000488376 TIMM8BQ9Y5J9 83 aaPredicted RBP9.8□□□□□ -0.84
SYNE1-226ENST00000488376 KMT2AQ03164 3969 aa9.8□□□□□ -0.84
SYNE1-226ENST00000488376 PGPA6NDG6 321 aa9.79□□□□□ -0.84
SYNE1-226ENST00000488376 ARPC5O15511 151 aa9.79□□□□□ -0.84
SYNE1-226ENST00000488376 GPX1P07203 203 aa9.79□□□□□ -0.84
SYNE1-226ENST00000488376 ZNF138P52744 262 aa9.79□□□□□ -0.84
SYNE1-226ENST00000488376 ZNF726P1Q15940 193 aa9.79□□□□□ -0.84
SYNE1-226ENST00000488376 PQLC2Q6ZP29 291 aa9.79□□□□□ -0.84
SYNE1-226ENST00000488376 ZNF493Q6ZR52 646 aa9.79□□□□□ -0.84
SYNE1-226ENST00000488376 C11orf72Q8NBR9 251 aa9.79□□□□□ -0.84
SYNE1-226ENST00000488376 OTORQ9NRC9 128 aa9.79□□□□□ -0.84
SYNE1-226ENST00000488376 CYTL1Q9NRR1 136 aa9.79□□□□□ -0.84
SYNE1-226ENST00000488376 STAG3L2P0CL84 134 aa9.78□□□□□ -0.84
SYNE1-226ENST00000488376 STAG3L3P0CL85 134 aa9.78□□□□□ -0.84
SYNE1-226ENST00000488376 CSN1S1P47710 185 aa9.78□□□□□ -0.84
SYNE1-226ENST00000488376 CCDC28AQ8IWP9 274 aa9.78□□□□□ -0.84
SYNE1-226ENST00000488376 LINC00612Q8N6U2 182 aa9.78□□□□□ -0.84
SYNE1-226ENST00000488376 OR11H4Q8NGC9 324 aa9.78□□□□□ -0.84
SYNE1-226ENST00000488376 PYGO2Q9BRQ0 406 aa9.78□□□□□ -0.84
SYNE1-226ENST00000488376 GSN-AS1Q9NRJ2 163 aa9.78□□□□□ -0.84
SYNE1-226ENST00000488376 VPS13DQ5THJ4 4388 aa9.77□□□□□ -0.85
SYNE1-226ENST00000488376 TRAV8-1A0A0A6YYK1 113 aa9.77□□□□□ -0.85
SYNE1-226ENST00000488376 GAGE12BA1L429 117 aa9.77□□□□□ -0.85
SYNE1-226ENST00000488376 RBAKDNA6NC62 111 aa9.77□□□□□ -0.85
SYNE1-226ENST00000488376 F5H768 121 aa9.77□□□□□ -0.85
SYNE1-226ENST00000488376 GAGE7O76087 117 aa9.77□□□□□ -0.85
SYNE1-226ENST00000488376 GAGE12FP0CL80 117 aa9.77□□□□□ -0.85
SYNE1-226ENST00000488376 GAGE12GP0CL81 117 aa9.77□□□□□ -0.85
SYNE1-226ENST00000488376 GAGE12IP0CL82 117 aa9.77□□□□□ -0.85
SYNE1-226ENST00000488376 GCHFRP30047 84 aa9.77□□□□□ -0.85
SYNE1-226ENST00000488376 Q6ZTI0 123 aa9.77□□□□□ -0.85
SYNE1-226ENST00000488376 GOLT1AQ6ZVE7 132 aa9.77□□□□□ -0.85
SYNE1-226ENST00000488376 TVP23CQ96ET8 276 aa9.77□□□□□ -0.85
SYNE1-226ENST00000488376 KLF12Q9Y4X4 402 aa9.77□□□□□ -0.85
SYNE1-226ENST00000488376 EPPK1P58107 5090 aaKnown RBP9.77□□□□□ -0.85
SYNE1-226ENST00000488376 BORCS7-ASMTA0A0B4J1R7 106 aa9.76□□□□□ -0.85
SYNE1-226ENST00000488376 CBY3A6NI87 242 aa9.76□□□□□ -0.85
SYNE1-226ENST00000488376 NMBP08949 121 aa9.76□□□□□ -0.85
SYNE1-226ENST00000488376 SERF2P84101 59 aa9.76□□□□□ -0.85
SYNE1-226ENST00000488376 SUN5Q8TC36 379 aa9.76□□□□□ -0.85
SYNE1-226ENST00000488376 FAM210BQ96KR6 192 aa9.76□□□□□ -0.85
SYNE1-226ENST00000488376 SGK494Q96LW2 274 aa9.76□□□□□ -0.85
SYNE1-226ENST00000488376 LINC00467Q9BRT7 94 aa9.76□□□□□ -0.85
SYNE1-226ENST00000488376 SNURFLB1AK76 121 aa9.75□□□□□ -0.85
SYNE1-226ENST00000488376 GGTLC3B5MD39 225 aa9.75□□□□□ -0.85
SYNE1-226ENST00000488376 ATP5G1P05496 136 aa9.75□□□□□ -0.85
SYNE1-226ENST00000488376 HOXA5P20719 270 aa9.75□□□□□ -0.85
SYNE1-226ENST00000488376 ATP5G3P48201 142 aa9.75□□□□□ -0.85
SYNE1-226ENST00000488376 MUC21Q5SSG8 566 aa9.75□□□□□ -0.85
SYNE1-226ENST00000488376 EIF4E3Q8N5X7 224 aaKnown RBP9.75□□□□□ -0.85
SYNE1-226ENST00000488376 POM121L12Q8N7R1 296 aa9.75□□□□□ -0.85
SYNE1-226ENST00000488376 CMTM2Q8TAZ6 248 aa9.75□□□□□ -0.85
SYNE1-226ENST00000488376 RXFP4Q8TDU9 374 aa9.75□□□□□ -0.85
SYNE1-226ENST00000488376 GNPNAT1Q96EK6 184 aaPredicted RBP9.75□□□□□ -0.85
SYNE1-226ENST00000488376 TMPRSS5Q9H3S3 457 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms