RNA–Protein interactions for RNA: ENST00000487150.2

LIMS3-205, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 3 BASIC

Gene LIMS3, Length 782 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-205ENST00000487150 TMED6Q8WW62 240 aa10.6□□□□□ -0.71
LIMS3-205ENST00000487150 NIPSNAP3BQ9BS92 247 aa10.6□□□□□ -0.71
LIMS3-205ENST00000487150 MAP1LC3BQ9GZQ8 125 aa10.6□□□□□ -0.71
LIMS3-205ENST00000487150 LENEPQ9Y5L5 61 aa10.6□□□□□ -0.71
LIMS3-205ENST00000487150 IGKV2-40A0A087WW87 121 aaPredicted RBP10.59□□□□□ -0.71
LIMS3-205ENST00000487150 A0A1W2PRE2 83 aa10.59□□□□□ -0.71
LIMS3-205ENST00000487150 PGPA6NDG6 321 aa10.59□□□□□ -0.71
LIMS3-205ENST00000487150 CXorf65A6NEN9 183 aa10.59□□□□□ -0.71
LIMS3-205ENST00000487150 NUPR2A6NF83 97 aa10.59□□□□□ -0.71
LIMS3-205ENST00000487150 FBLL1A6NHQ2 334 aaKnown RBP10.59□□□□□ -0.71
LIMS3-205ENST00000487150 CRXO43186 299 aaPredicted RBP10.59□□□□□ -0.71
LIMS3-205ENST00000487150 IGKV2D-40P01614 121 aaPredicted RBP10.59□□□□□ -0.71
LIMS3-205ENST00000487150 ZNF138P52744 262 aa10.59□□□□□ -0.71
LIMS3-205ENST00000487150 LGALSLQ3ZCW2 172 aaPredicted RBP10.59□□□□□ -0.71
LIMS3-205ENST00000487150 C1orf158Q8N1D5 194 aa10.59□□□□□ -0.71
LIMS3-205ENST00000487150 TCEAL7Q9BRU2 100 aa10.59□□□□□ -0.71
LIMS3-205ENST00000487150 ARL2-SNX15V9GYD0 113 aa10.59□□□□□ -0.71
LIMS3-205ENST00000487150 NBEAL2Q6ZNJ1 2754 aa10.59□□□□□ -0.71
LIMS3-205ENST00000487150 TENM3Q9P273 2699 aa10.58□□□□□ -0.72
LIMS3-205ENST00000487150 TRAV12-2A0A075B6T6 113 aa10.58□□□□□ -0.72
LIMS3-205ENST00000487150 LOC102723971A0A1B0GUV8 181 aa10.58□□□□□ -0.72
LIMS3-205ENST00000487150 DIRC3C9JPN6 131 aa10.58□□□□□ -0.72
LIMS3-205ENST00000487150 TEX46H3BTG2 121 aa10.58□□□□□ -0.72
LIMS3-205ENST00000487150 CT45A10P0DMU9 189 aa10.58□□□□□ -0.72
LIMS3-205ENST00000487150 CRISP2P16562 243 aa10.58□□□□□ -0.72
LIMS3-205ENST00000487150 PPT1P50897 306 aa10.58□□□□□ -0.72
LIMS3-205ENST00000487150 FAM213BQ8TBF2 198 aa10.58□□□□□ -0.72
LIMS3-205ENST00000487150 LINC01587Q99440 93 aa10.58□□□□□ -0.72
LIMS3-205ENST00000487150 NDFIP1Q9BT67 221 aa10.58□□□□□ -0.72
LIMS3-205ENST00000487150 C7orf71A4D174 169 aa10.57□□□□□ -0.72
LIMS3-205ENST00000487150 EIF3GO75821 320 aaKnown RBP eCLIP10.57□□□□□ -0.72
LIMS3-205ENST00000487150 ZNF726P1Q15940 193 aa10.57□□□□□ -0.72
LIMS3-205ENST00000487150 CASC10Q5T4H9 136 aa10.57□□□□□ -0.72
LIMS3-205ENST00000487150 GFI1BQ5VTD9 330 aa10.57□□□□□ -0.72
LIMS3-205ENST00000487150 ZNF493Q6ZR52 646 aa10.57□□□□□ -0.72
LIMS3-205ENST00000487150 CCDC28AQ8IWP9 274 aa10.57□□□□□ -0.72
LIMS3-205ENST00000487150 C16orf74Q96GX8 76 aa10.57□□□□□ -0.72
LIMS3-205ENST00000487150 PYGO2Q9BRQ0 406 aa10.57□□□□□ -0.72
LIMS3-205ENST00000487150 AGPAT4-IT1Q9H0P7 198 aa10.57□□□□□ -0.72
LIMS3-205ENST00000487150 ZNF492Q9P255 531 aa10.57□□□□□ -0.72
LIMS3-205ENST00000487150 AGRNO00468 2067 aa10.56□□□□□ -0.72
LIMS3-205ENST00000487150 KLLNB2CW77 178 aa10.56□□□□□ -0.72
LIMS3-205ENST00000487150 C11orf94C9JXX5 98 aa10.56□□□□□ -0.72
LIMS3-205ENST00000487150 GPX1P07203 203 aa10.56□□□□□ -0.72
LIMS3-205ENST00000487150 SPART-AS1P0CW21 52 aa10.56□□□□□ -0.72
LIMS3-205ENST00000487150 RBMY1A1P0DJD3 496 aaKnown RBP10.56□□□□□ -0.72
LIMS3-205ENST00000487150 RBMY1CP0DJD4 496 aa10.56□□□□□ -0.72
LIMS3-205ENST00000487150 ERCC8Q13216 396 aa10.56□□□□□ -0.72
LIMS3-205ENST00000487150 RBMY1FQ15415 496 aaKnown RBP10.56□□□□□ -0.72
LIMS3-205ENST00000487150 GOLT1AQ6ZVE7 132 aa10.56□□□□□ -0.72
LIMS3-205ENST00000487150 FAM19A4Q96LR4 140 aa10.56□□□□□ -0.72
LIMS3-205ENST00000487150 RPH3ALQ9UNE2 315 aa10.56□□□□□ -0.72
LIMS3-205ENST00000487150 KLK5Q9Y337 293 aaPredicted RBP10.56□□□□□ -0.72
LIMS3-205ENST00000487150 F6UZH7 168 aa10.55□□□□□ -0.72
LIMS3-205ENST00000487150 DEFB4AO15263 64 aa10.55□□□□□ -0.72
LIMS3-205ENST00000487150 SSX7Q7RTT5 188 aa10.55□□□□□ -0.72
LIMS3-205ENST00000487150 CYB561D1Q8N8Q1 229 aa10.55□□□□□ -0.72
LIMS3-205ENST00000487150 TMEM263Q8WUH6 116 aaKnown RBP10.55□□□□□ -0.72
LIMS3-205ENST00000487150 SFT2D1Q8WV19 159 aa10.55□□□□□ -0.72
LIMS3-205ENST00000487150 MBD3L1Q8WWY6 194 aa10.55□□□□□ -0.72
LIMS3-205ENST00000487150 VGLL1Q99990 258 aa10.55□□□□□ -0.72
LIMS3-205ENST00000487150 ATG101Q9BSB4 218 aa10.55□□□□□ -0.72
LIMS3-205ENST00000487150 GGTLC3B5MD39 225 aa10.54□□□□□ -0.72
LIMS3-205ENST00000487150 IFNA7P01567 189 aa10.54□□□□□ -0.72
LIMS3-205ENST00000487150 TCRAP04437 139 aa10.54□□□□□ -0.72
LIMS3-205ENST00000487150 H2AFB1P0C5Y9 115 aa10.54□□□□□ -0.72
LIMS3-205ENST00000487150 FHITP49789 147 aa10.54□□□□□ -0.72
LIMS3-205ENST00000487150 SUMO1P63165 101 aaKnown RBP10.54□□□□□ -0.72
LIMS3-205ENST00000487150 PMS2P11Q13670 270 aa10.54□□□□□ -0.72
LIMS3-205ENST00000487150 LCE2DQ5TA82 110 aaPredicted RBP10.54□□□□□ -0.72
LIMS3-205ENST00000487150 ZFAND6Q6FIF0 208 aa10.54□□□□□ -0.72
LIMS3-205ENST00000487150 C9orf62Q8N4C0 152 aa10.54□□□□□ -0.72
LIMS3-205ENST00000487150 ZNF680Q8NEM1 530 aa10.54□□□□□ -0.72
LIMS3-205ENST00000487150 HIST1H2BAQ96A08 127 aa10.54□□□□□ -0.72
LIMS3-205ENST00000487150 EPDR1Q9UM22 224 aa10.54□□□□□ -0.72
LIMS3-205ENST00000487150 TRAV12-3A0A0B4J271 114 aa10.53□□□□□ -0.72
LIMS3-205ENST00000487150 LYRM9A8MSI8 78 aa10.53□□□□□ -0.72
LIMS3-205ENST00000487150 J3KRW8 73 aa10.53□□□□□ -0.72
LIMS3-205ENST00000487150 PRB4P10163 310 aaPredicted RBP10.53□□□□□ -0.72
LIMS3-205ENST00000487150 EMP1P54849 157 aa10.53□□□□□ -0.72
LIMS3-205ENST00000487150 FGF8P55075 233 aaPredicted RBP10.53□□□□□ -0.72
LIMS3-205ENST00000487150 ZFAND2AQ8N6M9 145 aa10.53□□□□□ -0.72
LIMS3-205ENST00000487150 TMEM75Q8N9X5 138 aa10.53□□□□□ -0.72
LIMS3-205ENST00000487150 Q8TAT8 98 aa10.53□□□□□ -0.72
LIMS3-205ENST00000487150 LINC00467Q9BRT7 94 aa10.53□□□□□ -0.72
LIMS3-205ENST00000487150 YTHDF2Q9Y5A9 579 aaKnown RBP10.53□□□□□ -0.72
LIMS3-205ENST00000487150 A0A1B0GVG6 124 aa10.52□□□□□ -0.73
LIMS3-205ENST00000487150 FAM74A7A6NL05 159 aa10.52□□□□□ -0.73
LIMS3-205ENST00000487150 ZNF705GA8MUZ8 300 aaPredicted RBP10.52□□□□□ -0.73
LIMS3-205ENST00000487150 RNASE4P34096 147 aaKnown RBP10.52□□□□□ -0.73
LIMS3-205ENST00000487150 SULT1A2P50226 295 aa10.52□□□□□ -0.73
LIMS3-205ENST00000487150 CEMP1Q6PRD7 247 aaPredicted RBP10.52□□□□□ -0.73
LIMS3-205ENST00000487150 PHLDA1Q8WV24 401 aaPredicted RBP10.52□□□□□ -0.73
LIMS3-205ENST00000487150 DKK2Q9UBU2 259 aa10.52□□□□□ -0.73
LIMS3-205ENST00000487150 TRAV10A0A0B4J240 114 aa10.51□□□□□ -0.73
LIMS3-205ENST00000487150 TRAV1-1A0A0B4J248 108 aa10.51□□□□□ -0.73
LIMS3-205ENST00000487150 RGS13O14921 159 aa10.51□□□□□ -0.73
LIMS3-205ENST00000487150 HTN1P15515 57 aa10.51□□□□□ -0.73
LIMS3-205ENST00000487150 TCTAP57738 103 aa10.51□□□□□ -0.73
LIMS3-205ENST00000487150 NANOS2P60321 138 aaKnown RBP10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms