RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 CRXO43186 299 aaPredicted RBP8.8□□□□□ -1
HDAC6-228ENST00000486227 TOMM40O96008 361 aa8.8□□□□□ -1
HDAC6-228ENST00000486227 IGKCP01834 107 aa8.8□□□□□ -1
HDAC6-228ENST00000486227 ZNF138P52744 262 aa8.8□□□□□ -1
HDAC6-228ENST00000486227 FAM223AQ8IWN6 122 aa8.8□□□□□ -1
HDAC6-228ENST00000486227 Q8TAT8 98 aa8.8□□□□□ -1
HDAC6-228ENST00000486227 SLC25A2Q9BXI2 301 aa8.8□□□□□ -1
HDAC6-228ENST00000486227 GGTLC3B5MD39 225 aa8.79□□□□□ -1
HDAC6-228ENST00000486227 H7C2G1 150 aa8.79□□□□□ -1
HDAC6-228ENST00000486227 OVOL1O14753 267 aa8.79□□□□□ -1
HDAC6-228ENST00000486227 APOMO95445 188 aa8.79□□□□□ -1
HDAC6-228ENST00000486227 ADORA2A-AS1P86434 159 aa8.79□□□□□ -1
HDAC6-228ENST00000486227 POU2AF1Q16633 256 aa8.79□□□□□ -1
HDAC6-228ENST00000486227 MCRIP2Q9BUT9 160 aaKnown RBP8.79□□□□□ -1
HDAC6-228ENST00000486227 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.79□□□□□ -1
HDAC6-228ENST00000486227 Q6ZVH6 145 aa8.79□□□□□ -1
HDAC6-228ENST00000486227 PPP1R17O96001 155 aa8.79□□□□□ -1
HDAC6-228ENST00000486227 CD7P09564 240 aa8.79□□□□□ -1
HDAC6-228ENST00000486227 COX8AP10176 69 aa8.79□□□□□ -1
HDAC6-228ENST00000486227 LGALS3P17931 250 aaKnown RBP8.79□□□□□ -1
HDAC6-228ENST00000486227 CKS1BP61024 79 aa8.79□□□□□ -1
HDAC6-228ENST00000486227 D6R8Y8 96 aa8.78□□□□□ -1
HDAC6-228ENST00000486227 ZNF492Q9P255 531 aa8.78□□□□□ -1
HDAC6-228ENST00000486227 CYSLTR1Q9Y271 337 aa8.78□□□□□ -1
HDAC6-228ENST00000486227 NAV2Q8IVL1 2488 aa8.78□□□□□ -1
HDAC6-228ENST00000486227 DEFB125Q8N687 156 aa8.78□□□□□ -1
HDAC6-228ENST00000486227 IGFBPL1Q8WX77 278 aa8.78□□□□□ -1
HDAC6-228ENST00000486227 SCGB3A1Q96QR1 104 aa8.78□□□□□ -1
HDAC6-228ENST00000486227 SHANK2-AS3Q9BTD1 123 aa8.78□□□□□ -1
HDAC6-228ENST00000486227 TRAV21A0A0B4J279 112 aa8.78□□□□□ -1
HDAC6-228ENST00000486227 IGHV1-24A0A0C4DH33 117 aa8.78□□□□□ -1
HDAC6-228ENST00000486227 K7EP34 96 aa8.78□□□□□ -1
HDAC6-228ENST00000486227 ZNF688P0C7X2 276 aa8.78□□□□□ -1
HDAC6-228ENST00000486227 PSG3Q16557 428 aa8.78□□□□□ -1
HDAC6-228ENST00000486227 WIPF2Q8TF74 440 aaPredicted RBP8.77□□□□□ -1.01
HDAC6-228ENST00000486227 TMEM101Q96IK0 257 aa8.77□□□□□ -1.01
HDAC6-228ENST00000486227 CRIP3Q6Q6R5 217 aa8.77□□□□□ -1.01
HDAC6-228ENST00000486227 PRORYQ9H606 182 aa8.77□□□□□ -1.01
HDAC6-228ENST00000486227 NDUFA3O95167 84 aa8.77□□□□□ -1.01
HDAC6-228ENST00000486227 ADAMTSL5Q6ZMM2 481 aa8.77□□□□□ -1.01
HDAC6-228ENST00000486227 GEMIN7Q9H840 131 aaKnown RBP8.77□□□□□ -1.01
HDAC6-228ENST00000486227 CHD3Q12873 2000 aaKnown RBP8.77□□□□□ -1.01
HDAC6-228ENST00000486227 TNCP24821 2201 aa8.77□□□□□ -1.01
HDAC6-228ENST00000486227 HOXA3O43365 443 aaPredicted RBP8.76□□□□□ -1.01
HDAC6-228ENST00000486227 KLF5Q13887 457 aaPredicted RBP8.76□□□□□ -1.01
HDAC6-228ENST00000486227 ANAPC13Q9BS18 74 aa8.76□□□□□ -1.01
HDAC6-228ENST00000486227 SYNJ2BPP57105 145 aa8.76□□□□□ -1.01
HDAC6-228ENST00000486227 DAZAP2Q15038 168 aaPredicted RBP8.76□□□□□ -1.01
HDAC6-228ENST00000486227 IL17RELQ6ZVW7 336 aa8.76□□□□□ -1.01
HDAC6-228ENST00000486227 OVOL3O00110 214 aa8.76□□□□□ -1.01
HDAC6-228ENST00000486227 FAM110DQ8TAY7 271 aaPredicted RBP8.76□□□□□ -1.01
HDAC6-228ENST00000486227 TRGV4A0A0C4DH28 118 aa8.76□□□□□ -1.01
HDAC6-228ENST00000486227 LYPD1Q8N2G4 141 aa8.76□□□□□ -1.01
HDAC6-228ENST00000486227 C1QTNF4Q9BXJ3 329 aa8.76□□□□□ -1.01
HDAC6-228ENST00000486227 ANKRD11Q6UB99 2663 aaPredicted RBP8.75□□□□□ -1.01
HDAC6-228ENST00000486227 TRGV11A0A075B6L2 103 aa8.75□□□□□ -1.01
HDAC6-228ENST00000486227 PRR20EP86478 221 aa8.75□□□□□ -1.01
HDAC6-228ENST00000486227 PRR20CP86479 221 aa8.75□□□□□ -1.01
HDAC6-228ENST00000486227 PRR20DP86480 221 aa8.75□□□□□ -1.01
HDAC6-228ENST00000486227 PRR20BP86481 221 aa8.75□□□□□ -1.01
HDAC6-228ENST00000486227 PRR20AP86496 221 aa8.75□□□□□ -1.01
HDAC6-228ENST00000486227 C9orf139Q6ZV77 190 aa8.75□□□□□ -1.01
HDAC6-228ENST00000486227 Q86TA4 180 aa8.75□□□□□ -1.01
HDAC6-228ENST00000486227 RHPN1-AS1Q9BWJ2 59 aa8.75□□□□□ -1.01
HDAC6-228ENST00000486227 DAZ1Q9NQZ3 744 aaKnown RBP8.75□□□□□ -1.01
HDAC6-228ENST00000486227 LYZL1Q6UWQ5 148 aa8.75□□□□□ -1.01
HDAC6-228ENST00000486227 C22orf34Q6ZV56 151 aa8.75□□□□□ -1.01
HDAC6-228ENST00000486227 TMEM238C9JI98 176 aa8.75□□□□□ -1.01
HDAC6-228ENST00000486227 CHAC1Q9BUX1 264 aa8.75□□□□□ -1.01
HDAC6-228ENST00000486227 Q6ZPA2 131 aa8.74□□□□□ -1.01
HDAC6-228ENST00000486227 RPL35AP18077 110 aaKnown RBP8.74□□□□□ -1.01
HDAC6-228ENST00000486227 C1orf122Q6ZSJ8 110 aa8.74□□□□□ -1.01
HDAC6-228ENST00000486227 CSTL1Q9H114 145 aa8.74□□□□□ -1.01
HDAC6-228ENST00000486227 A8MWV9 139 aa8.74□□□□□ -1.01
HDAC6-228ENST00000486227 PRSS2P07478 247 aa8.74□□□□□ -1.01
HDAC6-228ENST00000486227 EVI2AP22794 236 aa8.74□□□□□ -1.01
HDAC6-228ENST00000486227 IFI27P40305 119 aaPredicted RBP8.74□□□□□ -1.01
HDAC6-228ENST00000486227 SRSF1Q07955 248 aaKnown RBP eCLIP8.74□□□□□ -1.011e-10■■■□□ 15.3
HDAC6-228ENST00000486227 FAM120AOSQ5T036 256 aa8.74□□□□□ -1.01
HDAC6-228ENST00000486227 C8orf31Q8N9H6 132 aa8.74□□□□□ -1.01
HDAC6-228ENST00000486227 IGHV4-61A0A0C4DH41 118 aa8.73□□□□□ -1.01
HDAC6-228ENST00000486227 SH2D1AO60880 128 aa8.73□□□□□ -1.01
HDAC6-228ENST00000486227 SSBP2P81877 361 aaPredicted RBP8.73□□□□□ -1.01
HDAC6-228ENST00000486227 IGLV2-14P01704 120 aa8.73□□□□□ -1.01
HDAC6-228ENST00000486227 ARMS2P0C7Q2 107 aa8.73□□□□□ -1.01
HDAC6-228ENST00000486227 IGLC1P0CG04 106 aa8.73□□□□□ -1.01
HDAC6-228ENST00000486227 SUMO2P61956 95 aaKnown RBP8.73□□□□□ -1.01
HDAC6-228ENST00000486227 TMEM170BQ5T4T1 132 aa8.73□□□□□ -1.01
HDAC6-228ENST00000486227 IGHV4-30-2A0A087WSY4 118 aa8.73□□□□□ -1.01
HDAC6-228ENST00000486227 FCN3O75636 299 aa8.73□□□□□ -1.01
HDAC6-228ENST00000486227 NCR2O95944 276 aa8.73□□□□□ -1.01
HDAC6-228ENST00000486227 IGHV4-39P01824 125 aa8.73□□□□□ -1.01
HDAC6-228ENST00000486227 LSM4Q9Y4Z0 139 aaKnown RBP8.73□□□□□ -1.01
HDAC6-228ENST00000486227 TRAV8-2A0A0B4J237 113 aa8.73□□□□□ -1.01
HDAC6-228ENST00000486227 LGALS9BQ3B8N2 356 aa8.73□□□□□ -1.01
HDAC6-228ENST00000486227 ZC2HC1BQ5TFG8 222 aa8.73□□□□□ -1.01
HDAC6-228ENST00000486227 LGALS9CQ6DKI2 356 aa8.73□□□□□ -1.01
HDAC6-228ENST00000486227 ODF3L1Q8IXM7 274 aa8.73□□□□□ -1.01
HDAC6-228ENST00000486227 SPTBN4Q9H254 2564 aa8.72□□□□□ -1.01
HDAC6-228ENST00000486227 A0A1W2PPM0 123 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 94.5 ms