RNA–Protein interactions for RNA: ENST00000484581.6

VPS13A-211, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2 BASIC

Gene VPS13A, Length 1,155 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-211ENST00000484581 HSPB8Q9UJY1 196 aa1.74□□□□□ -2.13
VPS13A-211ENST00000484581 TNRC6BQ9UPQ9 1833 aaKnown RBP1.74□□□□□ -2.13
VPS13A-211ENST00000484581 UNC13CQ8NB66 2214 aa1.74□□□□□ -2.13
VPS13A-211ENST00000484581 INE1O15225 51 aa1.73□□□□□ -2.13
VPS13A-211ENST00000484581 NUPR1O60356 82 aa1.73□□□□□ -2.13
VPS13A-211ENST00000484581 HBDP02042 147 aa1.73□□□□□ -2.13
VPS13A-211ENST00000484581 MT-ND4LP03901 98 aa1.73□□□□□ -2.13
VPS13A-211ENST00000484581 HMGN1P05114 100 aa1.73□□□□□ -2.13
VPS13A-211ENST00000484581 PSPHP78330 225 aa1.73□□□□□ -2.13
VPS13A-211ENST00000484581 DIAPH2-AS1Q14236 149 aa1.73□□□□□ -2.13
VPS13A-211ENST00000484581 GLIPR1L1Q6UWM5 242 aa1.73□□□□□ -2.13
VPS13A-211ENST00000484581 GKN2Q86XP6 184 aa1.73□□□□□ -2.13
VPS13A-211ENST00000484581 CLEC2BQ92478 149 aa1.73□□□□□ -2.13
VPS13A-211ENST00000484581 NABP2Q9BQ15 211 aa1.73□□□□□ -2.13
VPS13A-211ENST00000484581 CALML5Q9NZT1 146 aa1.73□□□□□ -2.13
VPS13A-211ENST00000484581 FBN1P35555 2871 aaKnown RBP1.73□□□□□ -2.13
VPS13A-211ENST00000484581 MED13Q9UHV7 2174 aa1.73□□□□□ -2.13
VPS13A-211ENST00000484581 DSPPQ9NZW4 1301 aa1.72□□□□□ -2.13
VPS13A-211ENST00000484581 NINQ8N4C6 2090 aa1.72□□□□□ -2.13
VPS13A-211ENST00000484581 IGKV3-7A0A075B6H7 116 aa1.72□□□□□ -2.13
VPS13A-211ENST00000484581 TRBV6-4A0A1B0GX49 114 aa1.72□□□□□ -2.13
VPS13A-211ENST00000484581 C9orf170A2RU37 121 aa1.72□□□□□ -2.13
VPS13A-211ENST00000484581 F8W1H4 67 aa1.72□□□□□ -2.13
VPS13A-211ENST00000484581 SLC25A5P05141 298 aaKnown RBP1.72□□□□□ -2.13
VPS13A-211ENST00000484581 SLC25A4P12235 298 aa1.72□□□□□ -2.13
VPS13A-211ENST00000484581 CCL4P13236 92 aa1.72□□□□□ -2.13
VPS13A-211ENST00000484581 KRTAP12-4P60329 112 aa1.72□□□□□ -2.13
VPS13A-211ENST00000484581 BLCAPP62952 87 aa1.72□□□□□ -2.13
VPS13A-211ENST00000484581 MPV17LQ2QL34 196 aa1.72□□□□□ -2.13
VPS13A-211ENST00000484581 TEN1Q86WV5 123 aa1.72□□□□□ -2.13
VPS13A-211ENST00000484581 OR4S1Q8NGB4 309 aa1.72□□□□□ -2.13
VPS13A-211ENST00000484581 OR5AK2Q8NH90 309 aa1.72□□□□□ -2.13
VPS13A-211ENST00000484581 MAGOHBQ96A72 148 aaKnown RBP1.72□□□□□ -2.13
VPS13A-211ENST00000484581 FKBP11Q9NYL4 201 aa1.72□□□□□ -2.13
VPS13A-211ENST00000484581 MUC4Q99102 2169 aa1.72□□□□□ -2.13
VPS13A-211ENST00000484581 IGKV2-40A0A087WW87 121 aaPredicted RBP1.71□□□□□ -2.14
VPS13A-211ENST00000484581 LOC107986453A0A1B0GWG9 222 aa1.71□□□□□ -2.14
VPS13A-211ENST00000484581 IGKV2D-40P01614 121 aaPredicted RBP1.71□□□□□ -2.14
VPS13A-211ENST00000484581 TCRAP04437 139 aa1.71□□□□□ -2.14
VPS13A-211ENST00000484581 COX7CP15954 63 aa1.71□□□□□ -2.14
VPS13A-211ENST00000484581 QRFPP83859 136 aa1.71□□□□□ -2.14
VPS13A-211ENST00000484581 MIR22HGQ0VDD5 57 aa1.71□□□□□ -2.14
VPS13A-211ENST00000484581 SMIM21Q3B7S5 101 aa1.71□□□□□ -2.14
VPS13A-211ENST00000484581 HSD17B12Q53GQ0 312 aa1.71□□□□□ -2.14
VPS13A-211ENST00000484581 FOXI2Q6ZQN5 318 aa1.71□□□□□ -2.14
VPS13A-211ENST00000484581 AP1S3Q96PC3 154 aa1.71□□□□□ -2.14
VPS13A-211ENST00000484581 MYH1P12882 1939 aa1.71□□□□□ -2.14
VPS13A-211ENST00000484581 ALPK3Q96L96 1907 aa1.71□□□□□ -2.14
VPS13A-211ENST00000484581 ADGRB2O60241 1585 aa1.71□□□□□ -2.14
VPS13A-211ENST00000484581 A0A096LPI6 279 aa1.7□□□□□ -2.14
VPS13A-211ENST00000484581 MPC1LP0DKB6 136 aa1.7□□□□□ -2.14
VPS13A-211ENST00000484581 CDK5RAP2Q96SN8 1893 aa1.69□□□□□ -2.14
VPS13A-211ENST00000484581 CASP8AP2Q9UKL3 1982 aa1.69□□□□□ -2.14
VPS13A-211ENST00000484581 SIP14410 1827 aa1.69□□□□□ -2.14
VPS13A-211ENST00000484581 ZNF727A8MUV8 499 aa1.69□□□□□ -2.14
VPS13A-211ENST00000484581 H3BRM9 83 aa1.69□□□□□ -2.14
VPS13A-211ENST00000484581 CCL25O15444 150 aa1.69□□□□□ -2.14
VPS13A-211ENST00000484581 IL9P15248 144 aa1.69□□□□□ -2.14
VPS13A-211ENST00000484581 EVI2AP22794 236 aa1.69□□□□□ -2.14
VPS13A-211ENST00000484581 HIST1H1AQ02539 215 aaPredicted RBP1.69□□□□□ -2.14
VPS13A-211ENST00000484581 KRTAP21-3Q3LHN1 58 aa1.69□□□□□ -2.14
VPS13A-211ENST00000484581 ASB16-AS1Q495Z4 193 aa1.69□□□□□ -2.14
VPS13A-211ENST00000484581 FAM19A2Q8N3H0 131 aa1.69□□□□□ -2.14
VPS13A-211ENST00000484581 COPZ2Q9P299 210 aa1.69□□□□□ -2.14
VPS13A-211ENST00000484581 MPC1Q9Y5U8 109 aa1.69□□□□□ -2.14
VPS13A-211ENST00000484581 MCM3APO60318 1980 aa1.68□□□□□ -2.14
VPS13A-211ENST00000484581 C3orf85A0A1B0GTC6 90 aa1.68□□□□□ -2.14
VPS13A-211ENST00000484581 IGKV2-29A2NJV5 120 aaPredicted RBP1.68□□□□□ -2.14
VPS13A-211ENST00000484581 GEMIN2O14893 280 aaKnown RBP1.68□□□□□ -2.14
VPS13A-211ENST00000484581 SMIM24O75264 130 aa1.68□□□□□ -2.14
VPS13A-211ENST00000484581 IGHV3-33P01772 117 aa1.68□□□□□ -2.14
VPS13A-211ENST00000484581 ETV6P41212 452 aa1.68□□□□□ -2.14
VPS13A-211ENST00000484581 TMEM91Q6ZNR0 172 aa1.68□□□□□ -2.14
VPS13A-211ENST00000484581 TCEAL4Q96EI5 215 aa1.68□□□□□ -2.14
VPS13A-211ENST00000484581 LINC00526Q96FQ7 95 aa1.68□□□□□ -2.14
VPS13A-211ENST00000484581 CECR2Q9BXF3 1484 aa1.68□□□□□ -2.14
VPS13A-211ENST00000484581 TRBV6-7A0A0A0MS04 114 aa1.67□□□□□ -2.14
VPS13A-211ENST00000484581 PRB1P04280 392 aa1.67□□□□□ -2.14
VPS13A-211ENST00000484581 HIST1H1BP16401 226 aaKnown RBP1.67□□□□□ -2.14
VPS13A-211ENST00000484581 GDF5OSQ5U4N7 250 aa1.67□□□□□ -2.14
VPS13A-211ENST00000484581 CASC2Q6XLA1 102 aa1.67□□□□□ -2.14
VPS13A-211ENST00000484581 CIB3Q96Q77 187 aaPredicted RBP1.67□□□□□ -2.14
VPS13A-211ENST00000484581 BANF2Q9H503 90 aa1.67□□□□□ -2.14
VPS13A-211ENST00000484581 TMEM14CQ9P0S9 112 aa1.67□□□□□ -2.14
VPS13A-211ENST00000484581 CRCT1Q9UGL9 99 aa1.67□□□□□ -2.14
VPS13A-211ENST00000484581 ZFP30Q9Y2G7 519 aa1.67□□□□□ -2.14
VPS13A-211ENST00000484581 ZCCHC6Q5VYS8 1495 aaKnown RBP1.67□□□□□ -2.14
VPS13A-211ENST00000484581 PRRC2BQ5JSZ5 2229 aaKnown RBP1.67□□□□□ -2.14
VPS13A-211ENST00000484581 RP1L1Q8IWN7 2480 aaPredicted RBP1.66□□□□□ -2.14
VPS13A-211ENST00000484581 COX4I1P13073 169 aa1.66□□□□□ -2.14
VPS13A-211ENST00000484581 HLA-DRB4P13762 266 aa1.66□□□□□ -2.14
VPS13A-211ENST00000484581 ZNF25P17030 456 aaPredicted RBP1.66□□□□□ -2.14
VPS13A-211ENST00000484581 AKR1D1P51857 326 aa1.66□□□□□ -2.14
VPS13A-211ENST00000484581 CCSMST1Q4G0I0 132 aa1.66□□□□□ -2.14
VPS13A-211ENST00000484581 ZCCHC23Q6ZST2 131 aa1.66□□□□□ -2.14
VPS13A-211ENST00000484581 C10orf105Q8TEF2 133 aa1.66□□□□□ -2.14
VPS13A-211ENST00000484581 HLA-DRB4X5D2U9 266 aa1.66□□□□□ -2.14
VPS13A-211ENST00000484581 CPDO75976 1380 aa1.66□□□□□ -2.14
VPS13A-211ENST00000484581 USP54Q70EL1 1684 aa1.65□□□□□ -2.15
VPS13A-211ENST00000484581 COL1A1P02452 1464 aaPredicted RBP1.65□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms