RNA–Protein interactions for RNA: ENST00000478938.1

SDF4-206, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,591 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-206ENST00000478938 TMEM78Q5T7P6 136 aa16.62■□□□□ 0.25
SDF4-206ENST00000478938 TPSG1Q9NRR2 321 aa16.62■□□□□ 0.25
SDF4-206ENST00000478938 DSPP15924 2871 aaKnown RBP16.62■□□□□ 0.25
SDF4-206ENST00000478938 FOLR3P41439 243 aa16.62■□□□□ 0.25
SDF4-206ENST00000478938 DSCAMO60469 2012 aa16.62■□□□□ 0.25
SDF4-206ENST00000478938 TRBV19A0A075B6N1 114 aa16.61■□□□□ 0.25
SDF4-206ENST00000478938 EFNA4P52798 201 aa16.61■□□□□ 0.25
SDF4-206ENST00000478938 SIGLEC15Q6ZMC9 328 aa16.61■□□□□ 0.25
SDF4-206ENST00000478938 OR11H6Q8NGC7 330 aa16.61■□□□□ 0.25
SDF4-206ENST00000478938 TMEM14CQ9P0S9 112 aa16.61■□□□□ 0.25
SDF4-206ENST00000478938 PLNP26678 52 aa16.6■□□□□ 0.25
SDF4-206ENST00000478938 PLEKHB2Q96CS7 222 aa16.6■□□□□ 0.25
SDF4-206ENST00000478938 EGR2P11161 476 aaPredicted RBP16.6■□□□□ 0.25
SDF4-206ENST00000478938 TMEM167AQ8TBQ9 72 aa16.6■□□□□ 0.25
SDF4-206ENST00000478938 MYOZ3Q8TDC0 251 aa16.6■□□□□ 0.25
SDF4-206ENST00000478938 CCL4P13236 92 aa16.59■□□□□ 0.25
SDF4-206ENST00000478938 SRSF9Q13242 221 aaKnown RBP eCLIP16.59■□□□□ 0.25
SDF4-206ENST00000478938 LYRM7Q5U5X0 104 aa16.59■□□□□ 0.25
SDF4-206ENST00000478938 ASIPP42127 132 aa16.59■□□□□ 0.25
SDF4-206ENST00000478938 LINC01559Q495D7 138 aa16.59■□□□□ 0.25
SDF4-206ENST00000478938 AAMDCQ9H7C9 122 aa16.59■□□□□ 0.25
SDF4-206ENST00000478938 RASL10AQ92737 203 aa16.58■□□□□ 0.25
SDF4-206ENST00000478938 IGHV1-2P23083 117 aa16.58■□□□□ 0.24
SDF4-206ENST00000478938 NGBQ9NPG2 151 aa16.58■□□□□ 0.24
SDF4-206ENST00000478938 LY6G6EA0A0G2JKS1 128 aa16.57■□□□□ 0.24
SDF4-206ENST00000478938 CD7P09564 240 aa16.57■□□□□ 0.24
SDF4-206ENST00000478938 Q8N8P6 123 aa16.57■□□□□ 0.24
SDF4-206ENST00000478938 RAB1BQ9H0U4 201 aa16.57■□□□□ 0.24
SDF4-206ENST00000478938 RAXQ9Y2V3 346 aa16.57■□□□□ 0.24
SDF4-206ENST00000478938 U3KQA8 63 aa16.57■□□□□ 0.24
SDF4-206ENST00000478938 CCL11P51671 97 aa16.57■□□□□ 0.24
SDF4-206ENST00000478938 CRIP2P52943 208 aaPredicted RBP16.57■□□□□ 0.24
SDF4-206ENST00000478938 SCGB1D4Q6XE38 83 aa16.57■□□□□ 0.24
SDF4-206ENST00000478938 AHCTF1Q8WYP5 2266 aa16.56■□□□□ 0.24
SDF4-206ENST00000478938 IGLV2-18A0A075B6J9 118 aa16.56■□□□□ 0.24
SDF4-206ENST00000478938 SLC25A20O43772 301 aa16.56■□□□□ 0.24
SDF4-206ENST00000478938 SCGB1C2P0DMR2 95 aa16.56■□□□□ 0.24
SDF4-206ENST00000478938 NDUFA11Q86Y39 141 aa16.56■□□□□ 0.24
SDF4-206ENST00000478938 ZNF815PA8K554 130 aa16.56■□□□□ 0.24
SDF4-206ENST00000478938 C9JAW5 83 aa16.56■□□□□ 0.24
SDF4-206ENST00000478938 C6orf15Q6UXA7 325 aaPredicted RBP16.56■□□□□ 0.24
SDF4-206ENST00000478938 TTTY12Q9BZ98 90 aa16.56■□□□□ 0.24
SDF4-206ENST00000478938 TRIOBPQ9H2D6 2365 aa16.55■□□□□ 0.24
SDF4-206ENST00000478938 Q6Q795 121 aa16.55■□□□□ 0.24
SDF4-206ENST00000478938 ZNF833PQ6ZTB9 187 aa16.55■□□□□ 0.24
SDF4-206ENST00000478938 ONECUT1Q9UBC0 465 aa16.55■□□□□ 0.24
SDF4-206ENST00000478938 IGLC6P0CF74 106 aa16.54■□□□□ 0.24
SDF4-206ENST00000478938 ZNF80P51504 273 aaPredicted RBP16.54■□□□□ 0.24
SDF4-206ENST00000478938 C15orf53Q8NAA6 179 aa16.54■□□□□ 0.24
SDF4-206ENST00000478938 ODF3Q96PU9 254 aa16.54■□□□□ 0.24
SDF4-206ENST00000478938 PRADC1Q9BSG0 188 aa16.54■□□□□ 0.24
SDF4-206ENST00000478938 WDFY4Q6ZS81 3184 aa16.54■□□□□ 0.24
SDF4-206ENST00000478938 VKORC1Q9BQB6 163 aa16.54■□□□□ 0.24
SDF4-206ENST00000478938 IGKV2-40A0A087WW87 121 aaPredicted RBP16.53■□□□□ 0.24
SDF4-206ENST00000478938 F8VRH5 84 aa16.53■□□□□ 0.24
SDF4-206ENST00000478938 IGKV2D-40P01614 121 aaPredicted RBP16.53■□□□□ 0.24
SDF4-206ENST00000478938 C3orf36Q3SXR2 165 aa16.53■□□□□ 0.24
SDF4-206ENST00000478938 DEFB108BQ8NET1 73 aa16.53■□□□□ 0.24
SDF4-206ENST00000478938 H7C1H1 209 aa16.53■□□□□ 0.24
SDF4-206ENST00000478938 IGLV2-23P01705 113 aa16.53■□□□□ 0.24
SDF4-206ENST00000478938 TRPT1Q86TN4 253 aaKnown RBP16.53■□□□□ 0.24
SDF4-206ENST00000478938 ZNF575Q86XF7 245 aa16.53■□□□□ 0.24
SDF4-206ENST00000478938 Q8TAT8 98 aa16.53■□□□□ 0.24
SDF4-206ENST00000478938 CSDC2Q9Y534 153 aaKnown RBP16.53■□□□□ 0.24
SDF4-206ENST00000478938 IL11RAQ14626 422 aa16.52■□□□□ 0.24
SDF4-206ENST00000478938 LAGE3Q14657 143 aa16.52■□□□□ 0.24
SDF4-206ENST00000478938 MDFICQ9P1T7 246 aa16.52■□□□□ 0.24
SDF4-206ENST00000478938 NTN5Q8WTR8 489 aaPredicted RBP16.52■□□□□ 0.23
SDF4-206ENST00000478938 SCNM1Q9BWG6 230 aa16.52■□□□□ 0.23
SDF4-206ENST00000478938 KLK15Q9H2R5 256 aa16.51■□□□□ 0.23
SDF4-206ENST00000478938 TRAV26-2A0A0B4J265 109 aa16.51■□□□□ 0.23
SDF4-206ENST00000478938 PRR30Q53SZ7 412 aaPredicted RBP16.51■□□□□ 0.23
SDF4-206ENST00000478938 DTX2Q86UW9 622 aa16.51■□□□□ 0.23
SDF4-206ENST00000478938 Q8N1Y9 231 aa16.51■□□□□ 0.23
SDF4-206ENST00000478938 OR4C13Q8NGP0 309 aa16.51■□□□□ 0.23
SDF4-206ENST00000478938 OR10J6PQ8NGY7 276 aa16.51■□□□□ 0.23
SDF4-206ENST00000478938 DMDP11532 3685 aa16.51■□□□□ 0.23
SDF4-206ENST00000478938 SLC25A16P16260 332 aa16.5■□□□□ 0.23
SDF4-206ENST00000478938 FAM216BQ8N7L0 139 aa16.5■□□□□ 0.23
SDF4-206ENST00000478938 CHCHD5Q9BSY4 110 aa16.5■□□□□ 0.23
SDF4-206ENST00000478938 IGFBP4P22692 258 aa16.5■□□□□ 0.23
SDF4-206ENST00000478938 KLHL30-AS1Q8NEE0 82 aa16.5■□□□□ 0.23
SDF4-206ENST00000478938 PRR25Q96S07 402 aa16.5■□□□□ 0.23
SDF4-206ENST00000478938 CECR9P0C854 216 aa16.49■□□□□ 0.23
SDF4-206ENST00000478938 TMEM155Q4W5P6 130 aa16.49■□□□□ 0.23
SDF4-206ENST00000478938 LINC01587Q99440 93 aa16.49■□□□□ 0.23
SDF4-206ENST00000478938 DCHS1Q96JQ0 3298 aa16.49■□□□□ 0.23
SDF4-206ENST00000478938 K7EM74 188 aa16.49■□□□□ 0.23
SDF4-206ENST00000478938 ORM1P02763 201 aa16.49■□□□□ 0.23
SDF4-206ENST00000478938 CFC1BP0CG36 223 aa16.49■□□□□ 0.23
SDF4-206ENST00000478938 CFC1P0CG37 223 aa16.49■□□□□ 0.23
SDF4-206ENST00000478938 MRGPRG-AS1Q2M3A8 158 aa16.49■□□□□ 0.23
SDF4-206ENST00000478938 SHANK2-AS3Q9BTD1 123 aa16.49■□□□□ 0.23
SDF4-206ENST00000478938 ICE1Q9Y2F5 2266 aa16.49■□□□□ 0.23
SDF4-206ENST00000478938 CACNA1EQ15878 2313 aa16.48■□□□□ 0.23
SDF4-206ENST00000478938 MSMPQ1L6U9 139 aa16.48■□□□□ 0.23
SDF4-206ENST00000478938 CCL13Q99616 98 aa16.48■□□□□ 0.23
SDF4-206ENST00000478938 MUC3AQ02505 3323 aa16.48■□□□□ 0.23
SDF4-206ENST00000478938 TRGV3P03979 118 aa16.47■□□□□ 0.23
SDF4-206ENST00000478938 TRAV8-4A0A0B4J246 113 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms