RNA–Protein interactions for RNA: ENST00000478473.1

C9orf3-215, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-215ENST00000478473 CCDC28AQ8IWP9 274 aa16.48■□□□□ 0.23
C9orf3-215ENST00000478473 TRAV12-3A0A0B4J271 114 aa16.47■□□□□ 0.23
C9orf3-215ENST00000478473 HTN1P15515 57 aa16.47■□□□□ 0.23
C9orf3-215ENST00000478473 ERCC8Q13216 396 aa16.47■□□□□ 0.23
C9orf3-215ENST00000478473 FFAR4Q5NUL3 377 aa16.47■□□□□ 0.23
C9orf3-215ENST00000478473 SCGB1C1Q8TD33 95 aa16.47■□□□□ 0.23
C9orf3-215ENST00000478473 WFDC1Q9HC57 220 aa16.47■□□□□ 0.23
C9orf3-215ENST00000478473 NOP10Q9NPE3 64 aaKnown RBP16.47■□□□□ 0.23
C9orf3-215ENST00000478473 C7orf71A4D174 169 aa16.46■□□□□ 0.23
C9orf3-215ENST00000478473 LGALS9BQ3B8N2 356 aa16.46■□□□□ 0.23
C9orf3-215ENST00000478473 OR10J4P0C629 311 aa16.45■□□□□ 0.22
C9orf3-215ENST00000478473 FAM3BP58499 235 aaPredicted RBP16.45■□□□□ 0.22
C9orf3-215ENST00000478473 DAZ2Q13117 558 aaKnown RBP16.45■□□□□ 0.22
C9orf3-215ENST00000478473 ZFAND2AQ8N6M9 145 aa16.45■□□□□ 0.22
C9orf3-215ENST00000478473 PHYHIPLQ96FC7 376 aa16.45■□□□□ 0.22
C9orf3-215ENST00000478473 SMIM3Q9BZL3 60 aa16.45■□□□□ 0.22
C9orf3-215ENST00000478473 ZNF492Q9P255 531 aa16.45■□□□□ 0.22
C9orf3-215ENST00000478473 RBAKDNA6NC62 111 aa16.44■□□□□ 0.22
C9orf3-215ENST00000478473 OR7C2O60412 319 aa16.43■□□□□ 0.22
C9orf3-215ENST00000478473 TAS2R45P59539 299 aa16.43■□□□□ 0.22
C9orf3-215ENST00000478473 ANXA2RQ3ZCQ2 193 aa16.43■□□□□ 0.22
C9orf3-215ENST00000478473 KHDC3LQ587J8 217 aa16.43■□□□□ 0.22
C9orf3-215ENST00000478473 TMEM78Q5T7P6 136 aa16.43■□□□□ 0.22
C9orf3-215ENST00000478473 FAM122CQ6P4D5 195 aa16.43■□□□□ 0.22
C9orf3-215ENST00000478473 Q6ZR54 194 aa16.43■□□□□ 0.22
C9orf3-215ENST00000478473 ASB13Q8WXK3 278 aa16.43■□□□□ 0.22
C9orf3-215ENST00000478473 C18orf15Q96N68 181 aa16.43■□□□□ 0.22
C9orf3-215ENST00000478473 VGLL1Q99990 258 aa16.43■□□□□ 0.22
C9orf3-215ENST00000478473 IGKV2-40A0A087WW87 121 aaPredicted RBP16.42■□□□□ 0.22
C9orf3-215ENST00000478473 J3KRW8 73 aa16.42■□□□□ 0.22
C9orf3-215ENST00000478473 IGKV2D-40P01614 121 aaPredicted RBP16.42■□□□□ 0.22
C9orf3-215ENST00000478473 CD300CQ08708 224 aa16.42■□□□□ 0.22
C9orf3-215ENST00000478473 LINC00336Q6ZUF6 198 aa16.42■□□□□ 0.22
C9orf3-215ENST00000478473 C11orf72Q8NBR9 251 aa16.42■□□□□ 0.22
C9orf3-215ENST00000478473 AQP10Q96PS8 301 aa16.42■□□□□ 0.22
C9orf3-215ENST00000478473 DNAH2Q9P225 4427 aa16.42■□□□□ 0.22
C9orf3-215ENST00000478473 F5H768 121 aa16.41■□□□□ 0.22
C9orf3-215ENST00000478473 M6PRP20645 277 aa16.41■□□□□ 0.22
C9orf3-215ENST00000478473 UBE2L3P68036 154 aaKnown RBP16.41■□□□□ 0.22
C9orf3-215ENST00000478473 BTN1A1Q13410 526 aa16.41■□□□□ 0.22
C9orf3-215ENST00000478473 ARL6IP6Q8N6S5 226 aa16.41■□□□□ 0.22
C9orf3-215ENST00000478473 ZNF680Q8NEM1 530 aa16.41■□□□□ 0.22
C9orf3-215ENST00000478473 MED28Q9H204 178 aa16.41■□□□□ 0.22
C9orf3-215ENST00000478473 HECTD4Q9Y4D8 3996 aa16.41■□□□□ 0.22
C9orf3-215ENST00000478473 SNURFLB1AK76 121 aa16.4■□□□□ 0.22
C9orf3-215ENST00000478473 ZNF138P52744 262 aa16.4■□□□□ 0.22
C9orf3-215ENST00000478473 RANP62826 216 aaKnown RBP16.4■□□□□ 0.22
C9orf3-215ENST00000478473 ACOT6Q3I5F7 207 aaPredicted RBP16.4■□□□□ 0.22
C9orf3-215ENST00000478473 Q9H3A6 140 aa16.4■□□□□ 0.22
C9orf3-215ENST00000478473 NACAE9PAV3 2078 aa16.39■□□□□ 0.21
C9orf3-215ENST00000478473 FAT2Q9NYQ8 4349 aa16.39■□□□□ 0.21
C9orf3-215ENST00000478473 GPX1P07203 203 aa16.39■□□□□ 0.21
C9orf3-215ENST00000478473 ZNF266Q14584 549 aa16.39■□□□□ 0.21
C9orf3-215ENST00000478473 PQLC2Q6ZP29 291 aa16.39■□□□□ 0.21
C9orf3-215ENST00000478473 UBE2DNLQ8IWF7 75 aa16.39■□□□□ 0.21
C9orf3-215ENST00000478473 EIF4E3Q8N5X7 224 aaKnown RBP16.39■□□□□ 0.21
C9orf3-215ENST00000478473 OR2G3Q8NGZ4 309 aa16.39■□□□□ 0.21
C9orf3-215ENST00000478473 LENEPQ9Y5L5 61 aa16.39■□□□□ 0.21
C9orf3-215ENST00000478473 GIPP09681 153 aaPredicted RBP16.38■□□□□ 0.21
C9orf3-215ENST00000478473 CSN1S1P47710 185 aa16.38■□□□□ 0.21
C9orf3-215ENST00000478473 IBA57Q5T440 356 aaKnown RBP16.38■□□□□ 0.21
C9orf3-215ENST00000478473 PRR9Q5T870 116 aa16.38■□□□□ 0.21
C9orf3-215ENST00000478473 RXFP4Q8TDU9 374 aa16.38■□□□□ 0.21
C9orf3-215ENST00000478473 TMED6Q8WW62 240 aa16.38■□□□□ 0.21
C9orf3-215ENST00000478473 DNAH17Q9UFH2 4485 aa16.37■□□□□ 0.21
C9orf3-215ENST00000478473 H3BNG1 76 aa16.37■□□□□ 0.21
C9orf3-215ENST00000478473 RNASE4P34096 147 aaKnown RBP16.37■□□□□ 0.21
C9orf3-215ENST00000478473 PSMG3Q9BT73 122 aaPredicted RBP16.37■□□□□ 0.21
C9orf3-215ENST00000478473 DIRC3C9JPN6 131 aa16.36■□□□□ 0.21
C9orf3-215ENST00000478473 TCL1AP56279 114 aa16.36■□□□□ 0.21
C9orf3-215ENST00000478473 OTORQ9NRC9 128 aa16.36■□□□□ 0.21
C9orf3-215ENST00000478473 GAGE12BA1L429 117 aa16.35■□□□□ 0.21
C9orf3-215ENST00000478473 RTL8CO15255 209 aa16.35■□□□□ 0.21
C9orf3-215ENST00000478473 GAGE7O76087 117 aa16.35■□□□□ 0.21
C9orf3-215ENST00000478473 GAGE12FP0CL80 117 aa16.35■□□□□ 0.21
C9orf3-215ENST00000478473 GAGE12GP0CL81 117 aa16.35■□□□□ 0.21
C9orf3-215ENST00000478473 GAGE12IP0CL82 117 aa16.35■□□□□ 0.21
C9orf3-215ENST00000478473 RAB2AP61019 212 aa16.35■□□□□ 0.21
C9orf3-215ENST00000478473 Q5BKY6 102 aa16.35■□□□□ 0.21
C9orf3-215ENST00000478473 Q6ZTI0 123 aa16.35■□□□□ 0.21
C9orf3-215ENST00000478473 GSN-AS1Q9NRJ2 163 aa16.35■□□□□ 0.21
C9orf3-215ENST00000478473 A0A1W2PPV4 95 aa16.34■□□□□ 0.21
C9orf3-215ENST00000478473 HOXA5P20719 270 aa16.34■□□□□ 0.21
C9orf3-215ENST00000478473 OR10G4Q8NGN3 311 aa16.34■□□□□ 0.21
C9orf3-215ENST00000478473 OR10G9Q8NGN4 311 aa16.34■□□□□ 0.21
C9orf3-215ENST00000478473 OR10G7Q8NGN6 311 aa16.34■□□□□ 0.21
C9orf3-215ENST00000478473 SUN5Q8TC36 379 aa16.34■□□□□ 0.21
C9orf3-215ENST00000478473 IGHV1OR15-1A0A075B7D0 117 aa16.33■□□□□ 0.2
C9orf3-215ENST00000478473 A0A1B0GVY2 172 aa16.33■□□□□ 0.2
C9orf3-215ENST00000478473 M0R2N4 97 aa16.33■□□□□ 0.2
C9orf3-215ENST00000478473 SPINK4O60575 86 aa16.33■□□□□ 0.2
C9orf3-215ENST00000478473 SERF2P84101 59 aa16.33■□□□□ 0.2
C9orf3-215ENST00000478473 Q6AWC8 147 aa16.33■□□□□ 0.2
C9orf3-215ENST00000478473 Q8TAT8 98 aa16.33■□□□□ 0.2
C9orf3-215ENST00000478473 Q6ZQT7 251 aa16.32■□□□□ 0.2
C9orf3-215ENST00000478473 ZNRF2Q8NHG8 242 aa16.32■□□□□ 0.2
C9orf3-215ENST00000478473 TRAV26-1A0A087WT03 109 aa16.31■□□□□ 0.2
C9orf3-215ENST00000478473 EIF3GO75821 320 aaKnown RBP eCLIP16.31■□□□□ 0.2
C9orf3-215ENST00000478473 NUDT3O95989 172 aa16.31■□□□□ 0.2
C9orf3-215ENST00000478473 STAG3L2P0CL84 134 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms