RNA–Protein interactions for RNA: ENST00000477949.1

USP33-208, Transcript of ubiquitin specific peptidase 33, human

TSL 2

Gene USP33, Length 663 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP33-208	ENST00000477949	IFT46	Q9NQC8	304 aa		4.02	□□□□□ -1.77
USP33-208	ENST00000477949	TP53TG3	Q9ULZ0	132 aa		4.02	□□□□□ -1.77
USP33-208	ENST00000477949	SYNE2	Q8WXH0	6885 aa	Known RBP	4.02	□□□□□ -1.77
USP33-208	ENST00000477949	TRAV8-3	A0A0A6YYJ7	113 aa		4.01	□□□□□ -1.77
USP33-208	ENST00000477949	KLLN	B2CW77	178 aa		4.01	□□□□□ -1.77
USP33-208	ENST00000477949		J3KRW8	73 aa		4.01	□□□□□ -1.77
USP33-208	ENST00000477949	SDC2	P34741	201 aa		4.01	□□□□□ -1.77
USP33-208	ENST00000477949	AMT	P48728	403 aa		4.01	□□□□□ -1.77
USP33-208	ENST00000477949	ATP5I	P56385	69 aa	Predicted RBP	4.01	□□□□□ -1.77
USP33-208	ENST00000477949	TSPAN5	P62079	268 aa		4.01	□□□□□ -1.77
USP33-208	ENST00000477949	SDIM1	Q6ZPB5	146 aa		4.01	□□□□□ -1.77
USP33-208	ENST00000477949		Q6ZQT7	251 aa		4.01	□□□□□ -1.77
USP33-208	ENST00000477949	CCDC190	Q86UF4	302 aa		4.01	□□□□□ -1.77
USP33-208	ENST00000477949	CROCCP3	Q8IVE0	287 aa		4.01	□□□□□ -1.77
USP33-208	ENST00000477949	EIF4E3	Q8N5X7	224 aa	Known RBP	4.01	□□□□□ -1.77
USP33-208	ENST00000477949	HSD17B11	Q8NBQ5	300 aa		4.01	□□□□□ -1.77
USP33-208	ENST00000477949	ATP6V0E2	Q8NHE4	81 aa		4.01	□□□□□ -1.77
USP33-208	ENST00000477949	PCNP	Q8WW12	178 aa	Known RBP	4.01	□□□□□ -1.77
USP33-208	ENST00000477949	FAM19A4	Q96LR4	140 aa		4.01	□□□□□ -1.77
USP33-208	ENST00000477949	SHANK2-AS3	Q9BTD1	123 aa		4.01	□□□□□ -1.77
USP33-208	ENST00000477949	SLC25A31	Q9H0C2	315 aa		4.01	□□□□□ -1.77
USP33-208	ENST00000477949	ZNF331	Q9NQX6	463 aa	Predicted RBP	4.01	□□□□□ -1.77
USP33-208	ENST00000477949	CTNNBIP1	Q9NSA3	81 aa	Predicted RBP	4.01	□□□□□ -1.77
USP33-208	ENST00000477949	SSR3	Q9UNL2	185 aa		4.01	□□□□□ -1.77
USP33-208	ENST00000477949	TMEM56-RWDD3	S4R434	201 aa		4.01	□□□□□ -1.77
USP33-208	ENST00000477949	TRGV4	A0A0C4DH28	118 aa		4	□□□□□ -1.77
USP33-208	ENST00000477949	C3orf85	A0A1B0GTC6	90 aa		4	□□□□□ -1.77
USP33-208	ENST00000477949	CDS2	O95674	445 aa		4	□□□□□ -1.77
USP33-208	ENST00000477949	CFD	P00746	253 aa	Predicted RBP	4	□□□□□ -1.77
USP33-208	ENST00000477949	PRSS3	P35030	304 aa		4	□□□□□ -1.77
USP33-208	ENST00000477949	GPX4	P36969	197 aa	Predicted RBP	4	□□□□□ -1.77
USP33-208	ENST00000477949	MEF2D	Q14814	521 aa		4	□□□□□ -1.77
USP33-208	ENST00000477949	SP6	Q3SY56	376 aa		4	□□□□□ -1.77
USP33-208	ENST00000477949	ATRAID	Q6UW56	229 aa		4	□□□□□ -1.77
USP33-208	ENST00000477949	DAZ4	Q86SG3	579 aa	Known RBP	4	□□□□□ -1.77
USP33-208	ENST00000477949	LHFPL1	Q86WI0	220 aa		4	□□□□□ -1.77
USP33-208	ENST00000477949	C9orf163	Q8N9P6	203 aa		4	□□□□□ -1.77
USP33-208	ENST00000477949	GPX8	Q8TED1	209 aa		4	□□□□□ -1.77
USP33-208	ENST00000477949	SLC35E1	Q96K37	410 aa		4	□□□□□ -1.77
USP33-208	ENST00000477949	DPH3P1	Q9H4G8	78 aa		4	□□□□□ -1.77
USP33-208	ENST00000477949	DAZ3	Q9NR90	486 aa	Known RBP	4	□□□□□ -1.77
USP33-208	ENST00000477949	KIF25-AS1	Q9Y6Z4	181 aa		4	□□□□□ -1.77
USP33-208	ENST00000477949		U3KQ87	197 aa		4	□□□□□ -1.77
USP33-208	ENST00000477949	TRAV8-6	A0A0B4J262	113 aa		3.99	□□□□□ -1.77
USP33-208	ENST00000477949	C7orf71	A4D174	169 aa		3.99	□□□□□ -1.77
USP33-208	ENST00000477949	CEBPZOS	A8MTT3	80 aa		3.99	□□□□□ -1.77
USP33-208	ENST00000477949	PRSS46	E5RG02	174 aa		3.99	□□□□□ -1.77
USP33-208	ENST00000477949	SLC17A3	O00476	420 aa		3.99	□□□□□ -1.77
USP33-208	ENST00000477949	PHOX2A	O14813	284 aa		3.99	□□□□□ -1.77
USP33-208	ENST00000477949	SLC25A5	P05141	298 aa	Known RBP	3.99	□□□□□ -1.77
USP33-208	ENST00000477949	FABP1	P07148	127 aa		3.99	□□□□□ -1.77
USP33-208	ENST00000477949	RPL7	P18124	248 aa	Known RBP	3.99	□□□□□ -1.77
USP33-208	ENST00000477949	ORM2	P19652	201 aa		3.99	□□□□□ -1.77
USP33-208	ENST00000477949	CXCL2	P19875	107 aa		3.99	□□□□□ -1.77
USP33-208	ENST00000477949	PPT1	P50897	306 aa		3.99	□□□□□ -1.77
USP33-208	ENST00000477949	PRR3	P79522	188 aa	Known RBP	3.99	□□□□□ -1.77
USP33-208	ENST00000477949	BTN1A1	Q13410	526 aa		3.99	□□□□□ -1.77
USP33-208	ENST00000477949	TRIM16L	Q309B1	348 aa		3.99	□□□□□ -1.77
USP33-208	ENST00000477949	OR10J3	Q5JRS4	329 aa		3.99	□□□□□ -1.77
USP33-208	ENST00000477949	PRR9	Q5T870	116 aa		3.99	□□□□□ -1.77
USP33-208	ENST00000477949	ACOT7L	Q6ZUV0	252 aa		3.99	□□□□□ -1.77
USP33-208	ENST00000477949	SH2D6	Q7Z4S9	175 aa		3.99	□□□□□ -1.77
USP33-208	ENST00000477949	OR10P1	Q8NGE3	313 aa		3.99	□□□□□ -1.77
USP33-208	ENST00000477949	RASL10A	Q92737	203 aa		3.99	□□□□□ -1.77
USP33-208	ENST00000477949	BLOC1S6	Q9UL45	172 aa		3.99	□□□□□ -1.77
USP33-208	ENST00000477949	NEB	P20929	6669 aa		3.98	□□□□□ -1.77
USP33-208	ENST00000477949	GATA1	P15976	413 aa	Predicted RBP	3.98	□□□□□ -1.77
USP33-208	ENST00000477949	HLA-DMA	P28067	261 aa		3.98	□□□□□ -1.77
USP33-208	ENST00000477949	S100A7	P31151	101 aa		3.98	□□□□□ -1.77
USP33-208	ENST00000477949	LEP	P41159	167 aa		3.98	□□□□□ -1.77
USP33-208	ENST00000477949	PIGP	P57054	158 aa		3.98	□□□□□ -1.77
USP33-208	ENST00000477949	GABARAPL2	P60520	117 aa		3.98	□□□□□ -1.77
USP33-208	ENST00000477949	GGNBP1	Q5YKI7	109 aa		3.98	□□□□□ -1.77
USP33-208	ENST00000477949	LGI3	Q8N145	548 aa		3.98	□□□□□ -1.77
USP33-208	ENST00000477949	ZFAND1	Q8TCF1	268 aa		3.98	□□□□□ -1.77
USP33-208	ENST00000477949	GLYATL2	Q8WU03	294 aa		3.98	□□□□□ -1.77
USP33-208	ENST00000477949	TMEM147	Q9BVK8	224 aa		3.98	□□□□□ -1.77
USP33-208	ENST00000477949	HSPB7	Q9UBY9	170 aa		3.98	□□□□□ -1.77
USP33-208	ENST00000477949	TRAV8-1	A0A0A6YYK1	113 aa		3.97	□□□□□ -1.77
USP33-208	ENST00000477949	TEX13D	A0A0J9YY54	714 aa	Predicted RBP	3.97	□□□□□ -1.77
USP33-208	ENST00000477949	PMS2P5	A8MQ11	134 aa		3.97	□□□□□ -1.77
USP33-208	ENST00000477949	GABARAP	H6UMI1	98 aa		3.97	□□□□□ -1.77
USP33-208	ENST00000477949	GABARAP	O95166	117 aa		3.97	□□□□□ -1.77
USP33-208	ENST00000477949	AQP4	P55087	323 aa		3.97	□□□□□ -1.77
USP33-208	ENST00000477949	PLP1	P60201	277 aa		3.97	□□□□□ -1.77
USP33-208	ENST00000477949	MXD1	Q05195	221 aa		3.97	□□□□□ -1.77
USP33-208	ENST00000477949	SRSF9	Q13242	221 aa	Known RBP eCLIP	3.97	□□□□□ -1.77
USP33-208	ENST00000477949	UBE2NL	Q5JXB2	153 aa		3.97	□□□□□ -1.77
USP33-208	ENST00000477949	FFAR4	Q5NUL3	377 aa		3.97	□□□□□ -1.77
USP33-208	ENST00000477949	GPR107	Q5VW38	600 aa		3.97	□□□□□ -1.77
USP33-208	ENST00000477949	STEAP1B	Q6NZ63	245 aa		3.97	□□□□□ -1.77
USP33-208	ENST00000477949	LCN15	Q6UWW0	184 aa		3.97	□□□□□ -1.77
USP33-208	ENST00000477949	PATE2	Q6UY27	113 aa		3.97	□□□□□ -1.77
USP33-208	ENST00000477949	ZFAND2A	Q8N6M9	145 aa		3.97	□□□□□ -1.77
USP33-208	ENST00000477949	NHLRC2	Q8NBF2	726 aa		3.97	□□□□□ -1.77
USP33-208	ENST00000477949	BPIFC	Q8NFQ6	507 aa		3.97	□□□□□ -1.77
USP33-208	ENST00000477949	TERB2	Q8NHR7	220 aa		3.97	□□□□□ -1.77
USP33-208	ENST00000477949	TMEM222	Q9H0R3	208 aa		3.97	□□□□□ -1.77
USP33-208	ENST00000477949	VAX2	Q9UIW0	290 aa		3.97	□□□□□ -1.77
USP33-208	ENST00000477949	IGKV2D-24	A0A075B6R9	120 aa		3.96	□□□□□ -1.78

Retrieved 100 of 20,778 RNA–protein pairs in 90.3 ms