RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-223ENST00000476519 ICAM4Q14773 271 aa8.47□□□□□ -1.05
SYNE1-223ENST00000476519 Q6ZR54 194 aa8.47□□□□□ -1.05
SYNE1-223ENST00000476519 EXOC3-AS1Q8N2X6 119 aa8.47□□□□□ -1.05
SYNE1-223ENST00000476519 SCGB1C1Q8TD33 95 aa8.47□□□□□ -1.05
SYNE1-223ENST00000476519 RNF141Q8WVD5 230 aa8.47□□□□□ -1.05
SYNE1-223ENST00000476519 LINC00467Q9BRT7 94 aa8.47□□□□□ -1.05
SYNE1-223ENST00000476519 PAXXQ9BUH6 204 aa8.47□□□□□ -1.05
SYNE1-223ENST00000476519 FUT9Q9Y231 359 aa8.47□□□□□ -1.05
SYNE1-223ENST00000476519 HERC2O95714 4834 aa8.46□□□□□ -1.05
SYNE1-223ENST00000476519 DNAH11Q96DT5 4516 aa8.46□□□□□ -1.05
SYNE1-223ENST00000476519 TRBV7-9A0A0J9YWB2 115 aa8.46□□□□□ -1.06
SYNE1-223ENST00000476519 C7orf71A4D174 169 aa8.46□□□□□ -1.06
SYNE1-223ENST00000476519 SNURFLB1AK76 121 aa8.46□□□□□ -1.06
SYNE1-223ENST00000476519 ZNF324O75467 553 aaPredicted RBP8.46□□□□□ -1.06
SYNE1-223ENST00000476519 CRISP2P16562 243 aa8.46□□□□□ -1.06
SYNE1-223ENST00000476519 LYPD1Q8N2G4 141 aa8.46□□□□□ -1.06
SYNE1-223ENST00000476519 FXYD5Q96DB9 178 aa8.46□□□□□ -1.06
SYNE1-223ENST00000476519 ATG101Q9BSB4 218 aa8.46□□□□□ -1.06
SYNE1-223ENST00000476519 HSPB11Q9Y547 144 aa8.46□□□□□ -1.06
SYNE1-223ENST00000476519 J3KRW8 73 aa8.45□□□□□ -1.06
SYNE1-223ENST00000476519 GPX1P07203 203 aa8.45□□□□□ -1.06
SYNE1-223ENST00000476519 CSN1S1P47710 185 aa8.45□□□□□ -1.06
SYNE1-223ENST00000476519 CCL18P55774 89 aa8.45□□□□□ -1.06
SYNE1-223ENST00000476519 ANXA2RQ3ZCQ2 193 aa8.45□□□□□ -1.06
SYNE1-223ENST00000476519 SOHLH1Q5JUK2 328 aa8.45□□□□□ -1.06
SYNE1-223ENST00000476519 TMEM78Q5T7P6 136 aa8.45□□□□□ -1.06
SYNE1-223ENST00000476519 ZNF680Q8NEM1 530 aa8.45□□□□□ -1.06
SYNE1-223ENST00000476519 ZNF503Q96F45 646 aa8.45□□□□□ -1.06
SYNE1-223ENST00000476519 ZNF492Q9P255 531 aa8.45□□□□□ -1.06
SYNE1-223ENST00000476519 PKHD1P08F94 4074 aa8.45□□□□□ -1.06
SYNE1-223ENST00000476519 IGLV2-18A0A075B6J9 118 aa8.44□□□□□ -1.06
SYNE1-223ENST00000476519 PRSS29PA6NIE9 313 aa8.44□□□□□ -1.06
SYNE1-223ENST00000476519 H3BNG1 76 aa8.44□□□□□ -1.06
SYNE1-223ENST00000476519 RTL8CO15255 209 aa8.44□□□□□ -1.06
SYNE1-223ENST00000476519 NUDT3O95989 172 aa8.44□□□□□ -1.06
SYNE1-223ENST00000476519 OR10J4P0C629 311 aa8.44□□□□□ -1.06
SYNE1-223ENST00000476519 M6PRP20645 277 aa8.44□□□□□ -1.06
SYNE1-223ENST00000476519 RNASE4P34096 147 aaKnown RBP8.44□□□□□ -1.06
SYNE1-223ENST00000476519 TAS2R45P59539 299 aa8.44□□□□□ -1.06
SYNE1-223ENST00000476519 CD300CQ08708 224 aa8.44□□□□□ -1.06
SYNE1-223ENST00000476519 OR5I1Q13606 314 aa8.44□□□□□ -1.06
SYNE1-223ENST00000476519 FFAR4Q5NUL3 377 aa8.44□□□□□ -1.06
SYNE1-223ENST00000476519 FAM122CQ6P4D5 195 aa8.44□□□□□ -1.06
SYNE1-223ENST00000476519 EIF4E3Q8N5X7 224 aaKnown RBP8.44□□□□□ -1.06
SYNE1-223ENST00000476519 C18orf15Q96N68 181 aa8.44□□□□□ -1.06
SYNE1-223ENST00000476519 VGLL1Q99990 258 aa8.44□□□□□ -1.06
SYNE1-223ENST00000476519 MBD2Q9UBB5 411 aa8.44□□□□□ -1.06
SYNE1-223ENST00000476519 PKD1P98161 4303 aa8.44□□□□□ -1.06
SYNE1-223ENST00000476519 DYNC1H1Q14204 4646 aaKnown RBP8.44□□□□□ -1.06
SYNE1-223ENST00000476519 GAGE12BA1L429 117 aa8.43□□□□□ -1.06
SYNE1-223ENST00000476519 RBAKDNA6NC62 111 aa8.43□□□□□ -1.06
SYNE1-223ENST00000476519 OR7C2O60412 319 aa8.43□□□□□ -1.06
SYNE1-223ENST00000476519 GAGE7O76087 117 aa8.43□□□□□ -1.06
SYNE1-223ENST00000476519 GAGE12FP0CL80 117 aa8.43□□□□□ -1.06
SYNE1-223ENST00000476519 GAGE12GP0CL81 117 aa8.43□□□□□ -1.06
SYNE1-223ENST00000476519 GAGE12IP0CL82 117 aa8.43□□□□□ -1.06
SYNE1-223ENST00000476519 ZNF138P52744 262 aa8.43□□□□□ -1.06
SYNE1-223ENST00000476519 RANP62826 216 aaKnown RBP8.43□□□□□ -1.06
SYNE1-223ENST00000476519 ZFAND2AQ8N6M9 145 aa8.43□□□□□ -1.06
SYNE1-223ENST00000476519 RXFP4Q8TDU9 374 aa8.43□□□□□ -1.06
SYNE1-223ENST00000476519 GNPNAT1Q96EK6 184 aaPredicted RBP8.43□□□□□ -1.06
SYNE1-223ENST00000476519 SMIM3Q9BZL3 60 aa8.43□□□□□ -1.06
SYNE1-223ENST00000476519 TRAV26-1A0A087WT03 109 aa8.42□□□□□ -1.06
SYNE1-223ENST00000476519 IGKV2-40A0A087WW87 121 aaPredicted RBP8.42□□□□□ -1.06
SYNE1-223ENST00000476519 A0A1B0GVY2 172 aa8.42□□□□□ -1.06
SYNE1-223ENST00000476519 IGKV2D-40P01614 121 aaPredicted RBP8.42□□□□□ -1.06
SYNE1-223ENST00000476519 BTN1A1Q13410 526 aa8.42□□□□□ -1.06
SYNE1-223ENST00000476519 KHDC3LQ587J8 217 aa8.42□□□□□ -1.06
SYNE1-223ENST00000476519 C1orf134Q5TEV5 83 aa8.42□□□□□ -1.06
SYNE1-223ENST00000476519 ARL6IP6Q8N6S5 226 aa8.42□□□□□ -1.06
SYNE1-223ENST00000476519 C11orf72Q8NBR9 251 aa8.42□□□□□ -1.06
SYNE1-223ENST00000476519 ZNRF2Q8NHG8 242 aa8.42□□□□□ -1.06
SYNE1-223ENST00000476519 PHYHIPLQ96FC7 376 aa8.42□□□□□ -1.06
SYNE1-223ENST00000476519 GSN-AS1Q9NRJ2 163 aa8.42□□□□□ -1.06
SYNE1-223ENST00000476519 KIAA1109Q2LD37 5005 aa8.41□□□□□ -1.06
SYNE1-223ENST00000476519 RGS13O14921 159 aa8.41□□□□□ -1.06
SYNE1-223ENST00000476519 PTTG1O95997 202 aa8.41□□□□□ -1.06
SYNE1-223ENST00000476519 UBE2L3P68036 154 aaKnown RBP8.41□□□□□ -1.06
SYNE1-223ENST00000476519 ACOT6Q3I5F7 207 aaPredicted RBP8.41□□□□□ -1.06
SYNE1-223ENST00000476519 IBA57Q5T440 356 aaKnown RBP8.41□□□□□ -1.06
SYNE1-223ENST00000476519 Q6ZTI0 123 aa8.41□□□□□ -1.06
SYNE1-223ENST00000476519 Q9H3A6 140 aa8.41□□□□□ -1.06
SYNE1-223ENST00000476519 WFDC1Q9HC57 220 aa8.41□□□□□ -1.06
SYNE1-223ENST00000476519 LINC00588Q9Y4M8 146 aa8.41□□□□□ -1.06
SYNE1-223ENST00000476519 LENEPQ9Y5L5 61 aa8.41□□□□□ -1.06
SYNE1-223ENST00000476519 ALG5Q9Y673 324 aa8.41□□□□□ -1.06
SYNE1-223ENST00000476519 TRGV2A0A075B6R0 118 aa8.4□□□□□ -1.06
SYNE1-223ENST00000476519 IGHV1OR15-1A0A075B7D0 117 aa8.4□□□□□ -1.06
SYNE1-223ENST00000476519 NBDYA0A0U1RRE5 68 aa8.4□□□□□ -1.06
SYNE1-223ENST00000476519 A0A1W2PPV4 95 aa8.4□□□□□ -1.06
SYNE1-223ENST00000476519 SPINK4O60575 86 aa8.4□□□□□ -1.06
SYNE1-223ENST00000476519 HOXA5P20719 270 aa8.4□□□□□ -1.06
SYNE1-223ENST00000476519 TCL1AP56279 114 aa8.4□□□□□ -1.06
SYNE1-223ENST00000476519 ZNF266Q14584 549 aa8.4□□□□□ -1.06
SYNE1-223ENST00000476519 FAM74A1Q5RGS3 127 aa8.4□□□□□ -1.06
SYNE1-223ENST00000476519 PQLC2Q6ZP29 291 aa8.4□□□□□ -1.06
SYNE1-223ENST00000476519 SSX7Q7RTT5 188 aa8.4□□□□□ -1.06
SYNE1-223ENST00000476519 TMED6Q8WW62 240 aa8.4□□□□□ -1.06
SYNE1-223ENST00000476519 OTORQ9NRC9 128 aa8.4□□□□□ -1.06
SYNE1-223ENST00000476519 TRGV1A0A0A0MS02 117 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms