RNA–Protein interactions for RNA: ENST00000475549.1

HDAC3-207, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 297 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-207ENST00000475549 ZNF253O75346 499 aa4.84□□□□□ -1.63
HDAC3-207ENST00000475549 H2AFB2P0C5Z0 115 aa4.84□□□□□ -1.63
HDAC3-207ENST00000475549 LORP23490 312 aaPredicted RBP4.84□□□□□ -1.63
HDAC3-207ENST00000475549 KRTAP10-2P60368 255 aa4.84□□□□□ -1.63
HDAC3-207ENST00000475549 NHLH2Q02577 135 aa4.84□□□□□ -1.63
HDAC3-207ENST00000475549 RAB31Q13636 194 aa4.84□□□□□ -1.63
HDAC3-207ENST00000475549 GUK1Q16774 197 aa4.84□□□□□ -1.63
HDAC3-207ENST00000475549 PRR9Q5T870 116 aa4.84□□□□□ -1.63
HDAC3-207ENST00000475549 CCDC28AQ8IWP9 274 aa4.84□□□□□ -1.63
HDAC3-207ENST00000475549 ZFAND2AQ8N6M9 145 aa4.84□□□□□ -1.63
HDAC3-207ENST00000475549 ZNF503Q96F45 646 aa4.84□□□□□ -1.63
HDAC3-207ENST00000475549 VGLL1Q99990 258 aa4.84□□□□□ -1.63
HDAC3-207ENST00000475549 PYGO2Q9BRQ0 406 aa4.84□□□□□ -1.63
HDAC3-207ENST00000475549 UPK3BQ9BT76 320 aa4.84□□□□□ -1.63
HDAC3-207ENST00000475549 SLC25A2Q9BXI2 301 aa4.84□□□□□ -1.63
HDAC3-207ENST00000475549 NPCDR1Q9BY65 106 aa4.84□□□□□ -1.63
HDAC3-207ENST00000475549 GSN-AS1Q9NRJ2 163 aa4.84□□□□□ -1.63
HDAC3-207ENST00000475549 TP53TG3Q9ULZ0 132 aa4.84□□□□□ -1.63
HDAC3-207ENST00000475549 KLF12Q9Y4X4 402 aa4.84□□□□□ -1.63
HDAC3-207ENST00000475549 NACAE9PAV3 2078 aa4.84□□□□□ -1.64
HDAC3-207ENST00000475549 APOBP04114 4563 aaKnown RBP4.84□□□□□ -1.64
HDAC3-207ENST00000475549 A0A096LPF7 62 aa4.83□□□□□ -1.64
HDAC3-207ENST00000475549 C7orf71A4D174 169 aa4.83□□□□□ -1.64
HDAC3-207ENST00000475549 C16orf90A8MZG2 172 aa4.83□□□□□ -1.64
HDAC3-207ENST00000475549 CDK2AP2O75956 126 aa4.83□□□□□ -1.64
HDAC3-207ENST00000475549 SIX6O95475 246 aa4.83□□□□□ -1.64
HDAC3-207ENST00000475549 RLN2P04090 185 aa4.83□□□□□ -1.64
HDAC3-207ENST00000475549 SLC25A5P05141 298 aaKnown RBP4.83□□□□□ -1.64
HDAC3-207ENST00000475549 HIST1H1EP10412 219 aaKnown RBP4.83□□□□□ -1.64
HDAC3-207ENST00000475549 FGF7P21781 194 aa4.83□□□□□ -1.64
HDAC3-207ENST00000475549 RNASE4P34096 147 aaKnown RBP4.83□□□□□ -1.64
HDAC3-207ENST00000475549 LEPP41159 167 aa4.83□□□□□ -1.64
HDAC3-207ENST00000475549 S100A10P60903 97 aa4.83□□□□□ -1.64
HDAC3-207ENST00000475549 IFITM3Q01628 133 aa4.83□□□□□ -1.64
HDAC3-207ENST00000475549 BAXQ07812 192 aa4.83□□□□□ -1.64
HDAC3-207ENST00000475549 BTN1A1Q13410 526 aa4.83□□□□□ -1.64
HDAC3-207ENST00000475549 CLINT1Q14677 625 aa4.83□□□□□ -1.64
HDAC3-207ENST00000475549 MIR17HGQ75NE6 70 aa4.83□□□□□ -1.64
HDAC3-207ENST00000475549 OR1L4Q8NGR5 311 aa4.83□□□□□ -1.64
HDAC3-207ENST00000475549 THAP6Q8TBB0 222 aa4.83□□□□□ -1.64
HDAC3-207ENST00000475549 BLNKQ8WV28 456 aa4.83□□□□□ -1.64
HDAC3-207ENST00000475549 FXYD5Q96DB9 178 aa4.83□□□□□ -1.64
HDAC3-207ENST00000475549 ANAPC16Q96DE5 110 aa4.83□□□□□ -1.64
HDAC3-207ENST00000475549 LINC00477Q96M19 166 aa4.83□□□□□ -1.64
HDAC3-207ENST00000475549 C18orf15Q96N68 181 aa4.83□□□□□ -1.64
HDAC3-207ENST00000475549 PFDN5Q99471 154 aa4.83□□□□□ -1.64
HDAC3-207ENST00000475549 LINC00467Q9BRT7 94 aa4.83□□□□□ -1.64
HDAC3-207ENST00000475549 Q9H3A6 140 aa4.83□□□□□ -1.64
HDAC3-207ENST00000475549 IGKV2-40A0A087WW87 121 aaPredicted RBP4.82□□□□□ -1.64
HDAC3-207ENST00000475549 FAM240BA0A1B0GVZ2 78 aa4.82□□□□□ -1.64
HDAC3-207ENST00000475549 SNURFLB1AK76 121 aa4.82□□□□□ -1.64
HDAC3-207ENST00000475549 SPINK4O60575 86 aa4.82□□□□□ -1.64
HDAC3-207ENST00000475549 IGKV2D-40P01614 121 aaPredicted RBP4.82□□□□□ -1.64
HDAC3-207ENST00000475549 OR10J4P0C629 311 aa4.82□□□□□ -1.64
HDAC3-207ENST00000475549 CRISP2P16562 243 aa4.82□□□□□ -1.64
HDAC3-207ENST00000475549 PVALBP20472 110 aaPredicted RBP4.82□□□□□ -1.64
HDAC3-207ENST00000475549 ASAH1Q13510 395 aa4.82□□□□□ -1.64
HDAC3-207ENST00000475549 PDE6HQ13956 83 aa4.82□□□□□ -1.64
HDAC3-207ENST00000475549 ICAM4Q14773 271 aa4.82□□□□□ -1.64
HDAC3-207ENST00000475549 ATP6V1FQ16864 119 aa4.82□□□□□ -1.64
HDAC3-207ENST00000475549 ANXA2RQ3ZCQ2 193 aa4.82□□□□□ -1.64
HDAC3-207ENST00000475549 Q6ZRN7 208 aaPredicted RBP4.82□□□□□ -1.64
HDAC3-207ENST00000475549 C9orf47Q6ZRZ4 202 aa4.82□□□□□ -1.64
HDAC3-207ENST00000475549 OR5C1Q8NGR4 320 aa4.82□□□□□ -1.64
HDAC3-207ENST00000475549 MRPL53Q96EL3 112 aaKnown RBP4.82□□□□□ -1.64
HDAC3-207ENST00000475549 CCDC32Q9BV29 185 aa4.82□□□□□ -1.64
HDAC3-207ENST00000475549 GPN1Q9HCN4 374 aaPredicted RBP4.82□□□□□ -1.64
HDAC3-207ENST00000475549 OR5AC2Q9NZP5 309 aa4.82□□□□□ -1.64
HDAC3-207ENST00000475549 ZNF492Q9P255 531 aa4.82□□□□□ -1.64
HDAC3-207ENST00000475549 TMA7Q9Y2S6 64 aaKnown RBP4.82□□□□□ -1.64
HDAC3-207ENST00000475549 MRPS16Q9Y3D3 137 aaKnown RBP4.82□□□□□ -1.64
HDAC3-207ENST00000475549 TIMM9Q9Y5J7 89 aa4.82□□□□□ -1.64
HDAC3-207ENST00000475549 TRGV1A0A0A0MS02 117 aa4.81□□□□□ -1.64
HDAC3-207ENST00000475549 EIF4EBP3O60516 100 aaPredicted RBP4.81□□□□□ -1.64
HDAC3-207ENST00000475549 NMBP08949 121 aa4.81□□□□□ -1.64
HDAC3-207ENST00000475549 NBEAP1P0C6P0 100 aa4.81□□□□□ -1.64
HDAC3-207ENST00000475549 FUSP35637 526 aaKnown RBP eCLIP4.81□□□□□ -1.64
HDAC3-207ENST00000475549 TCL1AP56279 114 aa4.81□□□□□ -1.64
HDAC3-207ENST00000475549 H2BFSP57053 126 aa4.81□□□□□ -1.64
HDAC3-207ENST00000475549 HBG1P69891 147 aa4.81□□□□□ -1.64
HDAC3-207ENST00000475549 HBG2P69892 147 aa4.81□□□□□ -1.64
HDAC3-207ENST00000475549 FAM122CQ6P4D5 195 aa4.81□□□□□ -1.64
HDAC3-207ENST00000475549 SPATA12Q7Z6I5 190 aa4.81□□□□□ -1.64
HDAC3-207ENST00000475549 STX12Q86Y82 276 aa4.81□□□□□ -1.64
HDAC3-207ENST00000475549 EIF4E3Q8N5X7 224 aaKnown RBP4.81□□□□□ -1.64
HDAC3-207ENST00000475549 PHYHIPLQ96FC7 376 aa4.81□□□□□ -1.64
HDAC3-207ENST00000475549 NDUFA13Q9P0J0 144 aa4.81□□□□□ -1.64
HDAC3-207ENST00000475549 FUT9Q9Y231 359 aa4.81□□□□□ -1.64
HDAC3-207ENST00000475549 TNFRSF18Q9Y5U5 241 aa4.81□□□□□ -1.64
HDAC3-207ENST00000475549 TRGV2A0A075B6R0 118 aa4.8□□□□□ -1.64
HDAC3-207ENST00000475549 A0A1W2PPQ1 181 aa4.8□□□□□ -1.64
HDAC3-207ENST00000475549 MPDU1O75352 247 aa4.8□□□□□ -1.64
HDAC3-207ENST00000475549 EIF3GO75821 320 aaKnown RBP eCLIP4.8□□□□□ -1.64
HDAC3-207ENST00000475549 IGHV3-53P01767 116 aa4.8□□□□□ -1.64
HDAC3-207ENST00000475549 GPX1P07203 203 aa4.8□□□□□ -1.64
HDAC3-207ENST00000475549 FHL2Q14192 279 aa4.8□□□□□ -1.64
HDAC3-207ENST00000475549 LRRC37A5PQ49AS3 106 aa4.8□□□□□ -1.64
HDAC3-207ENST00000475549 LYPD5Q6UWN5 251 aa4.8□□□□□ -1.64
HDAC3-207ENST00000475549 MAPKAPK5-AS1Q8N8E1 139 aa4.8□□□□□ -1.64
HDAC3-207ENST00000475549 ZNF680Q8NEM1 530 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms