RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 J3QKU1 62 aa5.82□□□□□ -1.48
COL6A3-208ENST00000468792 SOCS3O14543 225 aa5.82□□□□□ -1.48
COL6A3-208ENST00000468792 GPX1P07203 203 aa5.82□□□□□ -1.48
COL6A3-208ENST00000468792 GZMBP10144 247 aa5.82□□□□□ -1.48
COL6A3-208ENST00000468792 CTRLP40313 264 aa5.82□□□□□ -1.48
COL6A3-208ENST00000468792 RAB4BP61018 213 aa5.82□□□□□ -1.48
COL6A3-208ENST00000468792 SLC35B1P78383 322 aa5.82□□□□□ -1.48
COL6A3-208ENST00000468792 HIST1H1AQ02539 215 aaPredicted RBP5.82□□□□□ -1.48
COL6A3-208ENST00000468792 IQCJQ1A5X6 159 aa5.82□□□□□ -1.48
COL6A3-208ENST00000468792 FAM106AQ4KMX7 169 aa5.82□□□□□ -1.48
COL6A3-208ENST00000468792 PDZD11Q5EBL8 140 aa5.82□□□□□ -1.48
COL6A3-208ENST00000468792 Q6ZS46 218 aa5.82□□□□□ -1.48
COL6A3-208ENST00000468792 TCF24Q7RTU0 167 aa5.82□□□□□ -1.48
COL6A3-208ENST00000468792 BAGE3Q86Y29 109 aa5.82□□□□□ -1.48
COL6A3-208ENST00000468792 TMEM256Q8N2U0 113 aa5.82□□□□□ -1.48
COL6A3-208ENST00000468792 VGLL1Q99990 258 aa5.82□□□□□ -1.48
COL6A3-208ENST00000468792 DAZ1Q9NQZ3 744 aaKnown RBP5.82□□□□□ -1.48
COL6A3-208ENST00000468792 LINC00527Q9UJ94 153 aa5.82□□□□□ -1.48
COL6A3-208ENST00000468792 CR1P17927 2039 aa5.82□□□□□ -1.48
COL6A3-208ENST00000468792 ANK3Q12955 4377 aaKnown RBP5.81□□□□□ -1.48
COL6A3-208ENST00000468792 IGKV2-40A0A087WW87 121 aaPredicted RBP5.81□□□□□ -1.48
COL6A3-208ENST00000468792 IGHV3-35A0A0C4DH35 117 aa5.81□□□□□ -1.48
COL6A3-208ENST00000468792 IGHV7-4-1A0A0J9YVY3 117 aa5.81□□□□□ -1.48
COL6A3-208ENST00000468792 GRIFINA4D1Z8 144 aa5.81□□□□□ -1.48
COL6A3-208ENST00000468792 TMEM189A5PLL7 270 aa5.81□□□□□ -1.48
COL6A3-208ENST00000468792 F2Z2F3 143 aa5.81□□□□□ -1.48
COL6A3-208ENST00000468792 LGALS9O00182 355 aa5.81□□□□□ -1.48
COL6A3-208ENST00000468792 OVOL1O14753 267 aa5.81□□□□□ -1.48
COL6A3-208ENST00000468792 NUPR1O60356 82 aa5.81□□□□□ -1.48
COL6A3-208ENST00000468792 SPINK4O60575 86 aa5.81□□□□□ -1.48
COL6A3-208ENST00000468792 SH2D1AO60880 128 aa5.81□□□□□ -1.48
COL6A3-208ENST00000468792 SERF1AO75920 110 aa5.81□□□□□ -1.48
COL6A3-208ENST00000468792 IGKV2D-40P01614 121 aaPredicted RBP5.81□□□□□ -1.48
COL6A3-208ENST00000468792 PLA2G2AP14555 144 aa5.81□□□□□ -1.48
COL6A3-208ENST00000468792 RAB4AP20338 218 aa5.81□□□□□ -1.48
COL6A3-208ENST00000468792 SRIP30626 198 aa5.81□□□□□ -1.48
COL6A3-208ENST00000468792 ZNF138P52744 262 aa5.81□□□□□ -1.48
COL6A3-208ENST00000468792 UNQ9165/PRO28630Q6UXU0 137 aa5.81□□□□□ -1.48
COL6A3-208ENST00000468792 REC114Q7Z4M0 266 aa5.81□□□□□ -1.48
COL6A3-208ENST00000468792 C18orf32Q8TCD1 76 aa5.81□□□□□ -1.48
COL6A3-208ENST00000468792 WFDC12Q8WWY7 111 aa5.81□□□□□ -1.48
COL6A3-208ENST00000468792 BORCS7Q96B45 105 aa5.81□□□□□ -1.48
COL6A3-208ENST00000468792 KCNS1Q96KK3 526 aa5.81□□□□□ -1.48
COL6A3-208ENST00000468792 PGLYRP4Q96LB8 373 aa5.81□□□□□ -1.48
COL6A3-208ENST00000468792 UBE2E2Q96LR5 201 aa5.81□□□□□ -1.48
COL6A3-208ENST00000468792 LINC00477Q96M19 166 aa5.81□□□□□ -1.48
COL6A3-208ENST00000468792 Q96MF0 132 aa5.81□□□□□ -1.48
COL6A3-208ENST00000468792 SMPXQ9UHP9 88 aa5.81□□□□□ -1.48
COL6A3-208ENST00000468792 UFC1Q9Y3C8 167 aa5.81□□□□□ -1.48
COL6A3-208ENST00000468792 LOC102724200A0A096LPH7 203 aaPredicted RBP5.8□□□□□ -1.48
COL6A3-208ENST00000468792 TRBV12-3P01733 135 aa5.8□□□□□ -1.48
COL6A3-208ENST00000468792 IGLC6P0CF74 106 aa5.8□□□□□ -1.48
COL6A3-208ENST00000468792 PMCHP20382 165 aa5.8□□□□□ -1.48
COL6A3-208ENST00000468792 CAMPP49913 170 aa5.8□□□□□ -1.48
COL6A3-208ENST00000468792 TMEM78Q5T7P6 136 aa5.8□□□□□ -1.48
COL6A3-208ENST00000468792 ZNF575Q86XF7 245 aa5.8□□□□□ -1.48
COL6A3-208ENST00000468792 APRG1Q8IVJ8 170 aa5.8□□□□□ -1.48
COL6A3-208ENST00000468792 CHCHD1Q96BP2 118 aaKnown RBP5.8□□□□□ -1.48
COL6A3-208ENST00000468792 C16orf92Q96LL3 132 aa5.8□□□□□ -1.48
COL6A3-208ENST00000468792 C8orf49Q96NF6 230 aa5.8□□□□□ -1.48
COL6A3-208ENST00000468792 FOXC2Q99958 501 aa5.8□□□□□ -1.48
COL6A3-208ENST00000468792 AGPAT4-IT1Q9H0P7 198 aa5.8□□□□□ -1.48
COL6A3-208ENST00000468792 ZNF702PQ9H963 129 aa5.8□□□□□ -1.48
COL6A3-208ENST00000468792 NRN1Q9NPD7 142 aa5.8□□□□□ -1.48
COL6A3-208ENST00000468792 NBPF19A0A087WUL8 3843 aa5.8□□□□□ -1.48
COL6A3-208ENST00000468792 AKAP9Q99996 3911 aa5.8□□□□□ -1.48
COL6A3-208ENST00000468792 IGHV3OR16-8A0A075B7F1 116 aa5.79□□□□□ -1.48
COL6A3-208ENST00000468792 ZNF705FA8MVS1 300 aaPredicted RBP5.79□□□□□ -1.48
COL6A3-208ENST00000468792 PRAC2D3DTV9 90 aa5.79□□□□□ -1.48
COL6A3-208ENST00000468792 SMAD7O15105 426 aaKnown RBP5.79□□□□□ -1.48
COL6A3-208ENST00000468792 ZNF324O75467 553 aaPredicted RBP5.79□□□□□ -1.48
COL6A3-208ENST00000468792 LGALS1P09382 135 aaKnown RBP5.79□□□□□ -1.48
COL6A3-208ENST00000468792 HLA-DMBP28068 263 aa5.79□□□□□ -1.48
COL6A3-208ENST00000468792 PKIAP61925 76 aa5.79□□□□□ -1.48
COL6A3-208ENST00000468792 KIAA1644Q3SXP7 199 aa5.79□□□□□ -1.48
COL6A3-208ENST00000468792 SIGLECL1Q8N7X8 197 aa5.79□□□□□ -1.48
COL6A3-208ENST00000468792 FAM19A4Q96LR4 140 aa5.79□□□□□ -1.48
COL6A3-208ENST00000468792 RHPN1-AS1Q9BWJ2 59 aa5.79□□□□□ -1.48
COL6A3-208ENST00000468792 U3KQK5 164 aa5.79□□□□□ -1.48
COL6A3-208ENST00000468792 HELZ2Q9BYK8 2649 aaKnown RBP5.78□□□□□ -1.48
COL6A3-208ENST00000468792 IGHV4-4A0A075B6R2 117 aa5.78□□□□□ -1.48
COL6A3-208ENST00000468792 A0A1B0GUS0 222 aa5.78□□□□□ -1.48
COL6A3-208ENST00000468792 HOXA3O43365 443 aaPredicted RBP5.78□□□□□ -1.48
COL6A3-208ENST00000468792 ZNF207O43670 478 aaKnown RBP5.78□□□□□ -1.48
COL6A3-208ENST00000468792 IGHV3-11P01762 117 aa5.78□□□□□ -1.48
COL6A3-208ENST00000468792 OR5AL1P0C617 328 aa5.78□□□□□ -1.48
COL6A3-208ENST00000468792 ARMS2P0C7Q2 107 aa5.78□□□□□ -1.48
COL6A3-208ENST00000468792 ID1P41134 155 aa5.78□□□□□ -1.48
COL6A3-208ENST00000468792 ZNF80P51504 273 aaPredicted RBP5.78□□□□□ -1.48
COL6A3-208ENST00000468792 LYZL1Q6UWQ5 148 aa5.78□□□□□ -1.48
COL6A3-208ENST00000468792 IL17RELQ6ZVW7 336 aa5.78□□□□□ -1.48
COL6A3-208ENST00000468792 Q6ZWC4 215 aa5.78□□□□□ -1.48
COL6A3-208ENST00000468792 FER1L6-AS1Q8NA97 138 aa5.78□□□□□ -1.48
COL6A3-208ENST00000468792 MAPK1IP1LQ8NDC0 245 aa5.78□□□□□ -1.48
COL6A3-208ENST00000468792 ODF3Q96PU9 254 aa5.78□□□□□ -1.48
COL6A3-208ENST00000468792 SSBP4Q9BWG4 385 aaPredicted RBP5.78□□□□□ -1.48
COL6A3-208ENST00000468792 SAMD10Q9BYL1 202 aa5.78□□□□□ -1.48
COL6A3-208ENST00000468792 PDZD2O15018 2839 aa5.78□□□□□ -1.48
COL6A3-208ENST00000468792 ITPR3Q14573 2671 aa5.78□□□□□ -1.48
COL6A3-208ENST00000468792 ZNF469Q96JG9 3925 aaPredicted RBP5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 271.7 ms