RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 SH2D1AO60880 128 aa9.75□□□□□ -0.85
HDAC4-208ENST00000463007 CRYGCP07315 174 aa9.75□□□□□ -0.85
HDAC4-208ENST00000463007 SFTA2Q6UW10 78 aa9.75□□□□□ -0.85
HDAC4-208ENST00000463007 GTSCR1Q86UQ5 136 aa9.75□□□□□ -0.85
HDAC4-208ENST00000463007 TEX22C9J3V5 150 aa9.75□□□□□ -0.85
HDAC4-208ENST00000463007 SIGLEC15Q6ZMC9 328 aa9.75□□□□□ -0.85
HDAC4-208ENST00000463007 KLK15Q9H2R5 256 aa9.75□□□□□ -0.85
HDAC4-208ENST00000463007 CDSNQ15517 529 aa9.75□□□□□ -0.85
HDAC4-208ENST00000463007 CLUHP3Q96NS8 147 aa9.75□□□□□ -0.85
HDAC4-208ENST00000463007 VGLL1Q99990 258 aa9.75□□□□□ -0.85
HDAC4-208ENST00000463007 GRNP28799 593 aaKnown RBP9.74□□□□□ -0.85
HDAC4-208ENST00000463007 PLP1P60201 277 aa9.74□□□□□ -0.85
HDAC4-208ENST00000463007 ERCC8Q13216 396 aa9.74□□□□□ -0.85
HDAC4-208ENST00000463007 TMEM160Q9NX00 188 aa9.74□□□□□ -0.85
HDAC4-208ENST00000463007 CSPG4Q6UVK1 2322 aa9.74□□□□□ -0.85
HDAC4-208ENST00000463007 IGKV2D-26A0A0A0MRZ7 120 aa9.74□□□□□ -0.85
HDAC4-208ENST00000463007 EGR2P11161 476 aaPredicted RBP9.74□□□□□ -0.85
HDAC4-208ENST00000463007 RBPJQ06330 500 aa9.74□□□□□ -0.85
HDAC4-208ENST00000463007 ZNF491Q8N8L2 437 aa9.74□□□□□ -0.85
HDAC4-208ENST00000463007 NHP2Q9NX24 153 aaKnown RBP9.74□□□□□ -0.85
HDAC4-208ENST00000463007 CHTOPQ9Y3Y2 248 aaKnown RBP9.74□□□□□ -0.85
HDAC4-208ENST00000463007 CHD8Q9HCK8 2581 aa9.74□□□□□ -0.85
HDAC4-208ENST00000463007 PPIAL4CA0A0B4J2A2 164 aa9.73□□□□□ -0.85
HDAC4-208ENST00000463007 NPIPB6E9PJ23 425 aa9.73□□□□□ -0.85
HDAC4-208ENST00000463007 PPBPP02775 128 aa9.73□□□□□ -0.85
HDAC4-208ENST00000463007 PPIAL4GP0DN37 164 aa9.73□□□□□ -0.85
HDAC4-208ENST00000463007 LEPP41159 167 aa9.73□□□□□ -0.85
HDAC4-208ENST00000463007 ZNF80P51504 273 aaPredicted RBP9.73□□□□□ -0.85
HDAC4-208ENST00000463007 TNFRSF14Q92956 283 aa9.73□□□□□ -0.85
HDAC4-208ENST00000463007 C9orf118A6NHY6 69 aa9.73□□□□□ -0.85
HDAC4-208ENST00000463007 BUB1B-PAK6H3BSN5 160 aa9.73□□□□□ -0.85
HDAC4-208ENST00000463007 I3L2K1 104 aa9.73□□□□□ -0.85
HDAC4-208ENST00000463007 SMAD7O15105 426 aaKnown RBP9.73□□□□□ -0.85
HDAC4-208ENST00000463007 HBDP02042 147 aa9.73□□□□□ -0.85
HDAC4-208ENST00000463007 FAM104BQ5XKR9 115 aa9.73□□□□□ -0.85
HDAC4-208ENST00000463007 RNF182Q8N6D2 247 aa9.73□□□□□ -0.85
HDAC4-208ENST00000463007 TRAV26-2A0A0B4J265 109 aa9.73□□□□□ -0.85
HDAC4-208ENST00000463007 VSTM5A8MXK1 200 aa9.73□□□□□ -0.85
HDAC4-208ENST00000463007 K7EIM0 57 aa9.73□□□□□ -0.85
HDAC4-208ENST00000463007 FGF6P10767 208 aa9.73□□□□□ -0.85
HDAC4-208ENST00000463007 FXYD2P54710 66 aa9.73□□□□□ -0.85
HDAC4-208ENST00000463007 PAX2Q02962 417 aa9.73□□□□□ -0.85
HDAC4-208ENST00000463007 SHANK2-AS3Q9BTD1 123 aa9.73□□□□□ -0.85
HDAC4-208ENST00000463007 COL25A1Q9BXS0 654 aaPredicted RBP9.73□□□□□ -0.85
HDAC4-208ENST00000463007 UFC1Q9Y3C8 167 aa9.73□□□□□ -0.85
HDAC4-208ENST00000463007 NDUFS7O75251 213 aa9.72□□□□□ -0.85
HDAC4-208ENST00000463007 CD3EP07766 207 aa9.72□□□□□ -0.85
HDAC4-208ENST00000463007 LINC01560Q8TB33 94 aa9.72□□□□□ -0.85
HDAC4-208ENST00000463007 FOXC2Q99958 501 aa9.72□□□□□ -0.85
HDAC4-208ENST00000463007 GTSF1LQ9H1H1 148 aa9.72□□□□□ -0.85
HDAC4-208ENST00000463007 LY6LH3BQJ8 138 aa9.72□□□□□ -0.85
HDAC4-208ENST00000463007 SEC11AP67812 179 aa9.72□□□□□ -0.85
HDAC4-208ENST00000463007 ADORA2A-AS1P86434 159 aa9.71□□□□□ -0.85
HDAC4-208ENST00000463007 ZNF672Q499Z4 452 aaPredicted RBP9.71□□□□□ -0.85
HDAC4-208ENST00000463007 SMIM12Q96EX1 92 aa9.71□□□□□ -0.85
HDAC4-208ENST00000463007 AMTNQ6UX39 209 aa9.71□□□□□ -0.86
HDAC4-208ENST00000463007 LY6G5BQ8NDX9 201 aa9.71□□□□□ -0.86
HDAC4-208ENST00000463007 Q6ZQT7 251 aa9.71□□□□□ -0.86
HDAC4-208ENST00000463007 OVOL3O00110 214 aa9.7□□□□□ -0.86
HDAC4-208ENST00000463007 FABP2P12104 132 aa9.7□□□□□ -0.86
HDAC4-208ENST00000463007 SMAGPQ0VAQ4 97 aa9.7□□□□□ -0.86
HDAC4-208ENST00000463007 SAMD5Q5TGI4 173 aa9.7□□□□□ -0.86
HDAC4-208ENST00000463007 SPTBN4Q9H254 2564 aa9.7□□□□□ -0.86
HDAC4-208ENST00000463007 TEX48A0A1B0GUV7 120 aa9.69□□□□□ -0.86
HDAC4-208ENST00000463007 BOD1L2Q8IYS8 172 aa9.69□□□□□ -0.86
HDAC4-208ENST00000463007 H3BRN7 92 aa9.69□□□□□ -0.86
HDAC4-208ENST00000463007 K7EP34 96 aa9.69□□□□□ -0.86
HDAC4-208ENST00000463007 NDUFA3O95167 84 aa9.69□□□□□ -0.86
HDAC4-208ENST00000463007 HSD52Q0P140 79 aa9.69□□□□□ -0.86
HDAC4-208ENST00000463007 ZC2HC1BQ5TFG8 222 aa9.69□□□□□ -0.86
HDAC4-208ENST00000463007 C11orf71Q6IPW1 123 aa9.69□□□□□ -0.86
HDAC4-208ENST00000463007 H3BRM9 83 aa9.69□□□□□ -0.86
HDAC4-208ENST00000463007 TRAV40A0A0B4J280 105 aa9.68□□□□□ -0.86
HDAC4-208ENST00000463007 A0A1W2PPM0 123 aa9.68□□□□□ -0.86
HDAC4-208ENST00000463007 PRAC2D3DTV9 90 aa9.68□□□□□ -0.86
HDAC4-208ENST00000463007 SMIM13P0DJ93 91 aa9.68□□□□□ -0.86
HDAC4-208ENST00000463007 TMEM158Q8WZ71 300 aa9.68□□□□□ -0.86
HDAC4-208ENST00000463007 PRR25Q96S07 402 aa9.68□□□□□ -0.86
HDAC4-208ENST00000463007 RAXQ9Y2V3 346 aa9.68□□□□□ -0.86
HDAC4-208ENST00000463007 IGKV3-7A0A075B6H7 116 aa9.68□□□□□ -0.86
HDAC4-208ENST00000463007 UCNP55089 124 aa9.68□□□□□ -0.86
HDAC4-208ENST00000463007 CRYBG3Q68DQ2 2970 aa9.67□□□□□ -0.86
HDAC4-208ENST00000463007 FAM90A27PA6NNH2 459 aa9.67□□□□□ -0.86
HDAC4-208ENST00000463007 ADAMTSL5Q6ZMM2 481 aa9.67□□□□□ -0.86
HDAC4-208ENST00000463007 MAP1LC3AQ9H492 121 aa9.67□□□□□ -0.86
HDAC4-208ENST00000463007 EFNA4P52798 201 aa9.67□□□□□ -0.86
HDAC4-208ENST00000463007 ECSCRQ19T08 205 aa9.67□□□□□ -0.86
HDAC4-208ENST00000463007 LGALS9BQ3B8N2 356 aa9.67□□□□□ -0.86
HDAC4-208ENST00000463007 LGALS9CQ6DKI2 356 aa9.67□□□□□ -0.86
HDAC4-208ENST00000463007 SH2D6Q7Z4S9 175 aa9.67□□□□□ -0.86
HDAC4-208ENST00000463007 TMEM14CQ9P0S9 112 aa9.67□□□□□ -0.86
HDAC4-208ENST00000463007 CENPEQ02224 2701 aa9.67□□□□□ -0.86
HDAC4-208ENST00000463007 WFDC12Q8WWY7 111 aa9.67□□□□□ -0.86
HDAC4-208ENST00000463007 TMEM8BA6NDV4 472 aa9.66□□□□□ -0.86
HDAC4-208ENST00000463007 TRGV3P03979 118 aa9.66□□□□□ -0.86
HDAC4-208ENST00000463007 KLRB1Q12918 225 aa9.66□□□□□ -0.86
HDAC4-208ENST00000463007 UFSP1Q6NVU6 142 aa9.66□□□□□ -0.86
HDAC4-208ENST00000463007 H3BMG7 143 aa9.66□□□□□ -0.86
HDAC4-208ENST00000463007 NBR2O15453 112 aa9.66□□□□□ -0.86
HDAC4-208ENST00000463007 TNFRSF6BO95407 300 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms