RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 CDK5R1Q15078 307 aa3.7□□□□□ -1.82
CCDC88A-209ENST00000456975 TMEM30BQ3MIR4 351 aa3.7□□□□□ -1.82
CCDC88A-209ENST00000456975 KCNS1Q96KK3 526 aa3.7□□□□□ -1.82
CCDC88A-209ENST00000456975 OR8B2Q96RD0 313 aa3.7□□□□□ -1.82
CCDC88A-209ENST00000456975 OVOL2Q9BRP0 275 aa3.7□□□□□ -1.82
CCDC88A-209ENST00000456975 PAXXQ9BUH6 204 aa3.7□□□□□ -1.82
CCDC88A-209ENST00000456975 NMES1Q9C002 83 aa3.7□□□□□ -1.82
CCDC88A-209ENST00000456975 TP73-AS1Q9UF72 201 aa3.7□□□□□ -1.82
CCDC88A-209ENST00000456975 HLA-DRB4X5D2U9 266 aa3.7□□□□□ -1.82
CCDC88A-209ENST00000456975 A0A1W2PNU3 283 aaPredicted RBP3.69□□□□□ -1.82
CCDC88A-209ENST00000456975 ZNHIT1O43257 154 aa3.69□□□□□ -1.82
CCDC88A-209ENST00000456975 SYNGR2O43760 224 aa3.69□□□□□ -1.82
CCDC88A-209ENST00000456975 WISP3O95389 354 aaPredicted RBP3.69□□□□□ -1.82
CCDC88A-209ENST00000456975 GYPBP06028 91 aa3.69□□□□□ -1.82
CCDC88A-209ENST00000456975 HLA-DOBP13765 273 aa3.69□□□□□ -1.82
CCDC88A-209ENST00000456975 CA6P23280 308 aa3.69□□□□□ -1.82
CCDC88A-209ENST00000456975 QRFPP83859 136 aa3.69□□□□□ -1.82
CCDC88A-209ENST00000456975 ERCC8Q13216 396 aa3.69□□□□□ -1.82
CCDC88A-209ENST00000456975 Q6ZPA2 131 aa3.69□□□□□ -1.82
CCDC88A-209ENST00000456975 OR2A1Q8NGT9 310 aa3.69□□□□□ -1.82
CCDC88A-209ENST00000456975 DCANP1Q8TF63 244 aa3.69□□□□□ -1.82
CCDC88A-209ENST00000456975 TMEM158Q8WZ71 300 aa3.69□□□□□ -1.82
CCDC88A-209ENST00000456975 SERP1Q9Y6X1 66 aa3.69□□□□□ -1.82
CCDC88A-209ENST00000456975 ABCA12Q86UK0 2595 aa3.69□□□□□ -1.82
CCDC88A-209ENST00000456975 NBPF19A0A087WUL8 3843 aa3.69□□□□□ -1.82
CCDC88A-209ENST00000456975 LRRK2Q5S007 2527 aa3.69□□□□□ -1.82
CCDC88A-209ENST00000456975 IGHV5-10-1A0A0J9YXX1 117 aa3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 MDFIC2A0A1B0GVS7 189 aa3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 WI2-2373I1.2A0A1W2PRP0 233 aa3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 hADV29S1A0JD25 119 aa3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 C15orf62A8K5M9 175 aa3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 INAFM1C9JVW0 142 aa3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 NDUFC2-KCTD14E9PQ53 114 aa3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 LINC01619G3V211 115 aa3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 PDCD6O75340 191 aa3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 IGKCP01834 107 aa3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 IL3RAP26951 378 aa3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 DAD1P61803 113 aa3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 RSPO1Q2MKA7 263 aaPredicted RBP3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 AMN1Q8IY45 258 aa3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 DRAM1Q8N682 238 aa3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 C15orf53Q8NAA6 179 aa3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 PHLDA1Q8WV24 401 aaPredicted RBP3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 FXYD5Q96DB9 178 aa3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 PARP12Q9H0J9 701 aaKnown RBP3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 ABRACLQ9P1F3 81 aa3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 C19orf25Q9UFG5 118 aaPredicted RBP3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 HILPDAQ9Y5L2 63 aa3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 MED13Q9UHV7 2174 aa3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 BOD1L1Q8NFC6 3051 aa3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 LINC01548A6NM66 108 aa3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 ZNF736B4DX44 427 aaPredicted RBP3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 PRH1P02810 166 aa3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 ZNF816Q0VGE8 651 aaPredicted RBP3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 GFRALQ6UXV0 394 aa3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 FP248Q71RG6 208 aaPredicted RBP3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 RPP25LQ8N5L8 163 aaKnown RBP3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 MAPKAPK5-AS1Q8N8E1 139 aa3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 FLVCR1-AS1Q8TAF5 88 aa3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 PRSS27Q9BQR3 290 aa3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 FAM60AQ9NP50 221 aa3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 OCIAD1Q9NX40 245 aa3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 ARL2-SNX15V9GYD0 113 aa3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 RP1P56715 2156 aa3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 USP9YO00507 2555 aaPredicted RBP3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 FLNCQ14315 2725 aa3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 UTP20O75691 2785 aaKnown RBP3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 NOTCH2Q04721 2471 aa3.68□□□□□ -1.82
CCDC88A-209ENST00000456975 NDUFB2O95178 105 aa3.67□□□□□ -1.82
CCDC88A-209ENST00000456975 CACNG7P62955 275 aa3.67□□□□□ -1.82
CCDC88A-209ENST00000456975 CCL20P78556 96 aa3.67□□□□□ -1.82
CCDC88A-209ENST00000456975 DAZAP2Q15038 168 aaPredicted RBP3.67□□□□□ -1.82
CCDC88A-209ENST00000456975 C1orf140Q5VVS0 124 aa3.67□□□□□ -1.82
CCDC88A-209ENST00000456975 KTN1-AS1Q86SY8 53 aa3.67□□□□□ -1.82
CCDC88A-209ENST00000456975 TMEM75Q8N9X5 138 aa3.67□□□□□ -1.82
CCDC88A-209ENST00000456975 FAM57AQ8TBR7 257 aa3.67□□□□□ -1.82
CCDC88A-209ENST00000456975 ATXN7L3BQ96GX2 97 aa3.67□□□□□ -1.82
CCDC88A-209ENST00000456975 ODF3Q96PU9 254 aa3.67□□□□□ -1.82
CCDC88A-209ENST00000456975 METTL26Q96S19 204 aa3.67□□□□□ -1.82
CCDC88A-209ENST00000456975 SRXN1Q9BYN0 137 aa3.67□□□□□ -1.82
CCDC88A-209ENST00000456975 PIKFYVEQ9Y2I7 2098 aa3.67□□□□□ -1.82
CCDC88A-209ENST00000456975 RELNP78509 3460 aa3.67□□□□□ -1.82
CCDC88A-209ENST00000456975 SNRNP200O75643 2136 aaKnown RBP3.67□□□□□ -1.82
CCDC88A-209ENST00000456975 A0A0A6YYD4 124 aa3.67□□□□□ -1.82
CCDC88A-209ENST00000456975 SNURFLB1AK76 121 aa3.67□□□□□ -1.82
CCDC88A-209ENST00000456975 IGLL5B9A064 214 aa3.67□□□□□ -1.82
CCDC88A-209ENST00000456975 SS18L1O75177 396 aaPredicted RBP3.67□□□□□ -1.82
CCDC88A-209ENST00000456975 RBMY1CP0DJD4 496 aa3.67□□□□□ -1.82
CCDC88A-209ENST00000456975 PEBP1P30086 187 aaKnown RBP3.67□□□□□ -1.82
CCDC88A-209ENST00000456975 NPC2P61916 151 aa3.67□□□□□ -1.82
CCDC88A-209ENST00000456975 FAM222AQ5U5X8 452 aa3.67□□□□□ -1.82
CCDC88A-209ENST00000456975 LGALS9CQ6DKI2 356 aa3.67□□□□□ -1.82
CCDC88A-209ENST00000456975 SCGB1D4Q6XE38 83 aa3.67□□□□□ -1.82
CCDC88A-209ENST00000456975 LINC01555Q8NAE3 123 aa3.67□□□□□ -1.82
CCDC88A-209ENST00000456975 MYOZ3Q8TDC0 251 aa3.67□□□□□ -1.82
CCDC88A-209ENST00000456975 CCL17Q92583 94 aa3.67□□□□□ -1.82
CCDC88A-209ENST00000456975 BSNQ9UPA5 3926 aa3.67□□□□□ -1.82
CCDC88A-209ENST00000456975 FBN2P35556 2912 aa3.67□□□□□ -1.82
CCDC88A-209ENST00000456975 TLN1Q9Y490 2541 aaKnown RBP3.66□□□□□ -1.82
CCDC88A-209ENST00000456975 TRAV8-1A0A0A6YYK1 113 aa3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms