RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 TAAR5O14804 337 aa12.36□□□□□ -0.43
USP39-208ENST00000455732 IGKV2D-40P01614 121 aaPredicted RBP12.36□□□□□ -0.43
USP39-208ENST00000455732 NMBP08949 121 aa12.36□□□□□ -0.43
USP39-208ENST00000455732 CDC34P49427 236 aaPredicted RBP12.36□□□□□ -0.43
USP39-208ENST00000455732 RANP62826 216 aaKnown RBP12.36□□□□□ -0.43
USP39-208ENST00000455732 ERCC8Q13216 396 aa12.36□□□□□ -0.43
USP39-208ENST00000455732 LGALS9CQ6DKI2 356 aa12.36□□□□□ -0.43
USP39-208ENST00000455732 ZNF767PQ75MW2 155 aa12.36□□□□□ -0.43
USP39-208ENST00000455732 NIPSNAP3BQ9BS92 247 aa12.36□□□□□ -0.43
USP39-208ENST00000455732 DEFB131BA0A096LNP1 70 aa12.35□□□□□ -0.43
USP39-208ENST00000455732 RBAKDNA6NC62 111 aa12.35□□□□□ -0.43
USP39-208ENST00000455732 LYRM9A8MSI8 78 aa12.35□□□□□ -0.43
USP39-208ENST00000455732 KLLNB2CW77 178 aa12.35□□□□□ -0.43
USP39-208ENST00000455732 ARPC5O15511 151 aa12.35□□□□□ -0.43
USP39-208ENST00000455732 EIF3GO75821 320 aaKnown RBP eCLIP12.35□□□□□ -0.43
USP39-208ENST00000455732 SLC25A5P05141 298 aaKnown RBP12.35□□□□□ -0.43
USP39-208ENST00000455732 STAG3L2P0CL84 134 aa12.35□□□□□ -0.43
USP39-208ENST00000455732 STAG3L3P0CL85 134 aa12.35□□□□□ -0.43
USP39-208ENST00000455732 CRISP2P16562 243 aa12.35□□□□□ -0.43
USP39-208ENST00000455732 CSN1S1P47710 185 aa12.35□□□□□ -0.43
USP39-208ENST00000455732 TMEM78Q5T7P6 136 aa12.35□□□□□ -0.43
USP39-208ENST00000455732 ZNF493Q6ZR52 646 aa12.35□□□□□ -0.43
USP39-208ENST00000455732 C16orf74Q96GX8 76 aa12.35□□□□□ -0.43
USP39-208ENST00000455732 OTORQ9NRC9 128 aa12.35□□□□□ -0.43
USP39-208ENST00000455732 APLNQ9ULZ1 77 aa12.35□□□□□ -0.43
USP39-208ENST00000455732 TRBV7-9A0A0J9YWB2 115 aa12.34□□□□□ -0.43
USP39-208ENST00000455732 PRM2P04554 102 aa12.34□□□□□ -0.43
USP39-208ENST00000455732 AZU1P20160 251 aa12.34□□□□□ -0.43
USP39-208ENST00000455732 ZNF345Q14585 488 aa12.34□□□□□ -0.43
USP39-208ENST00000455732 ARL6IP6Q8N6S5 226 aa12.34□□□□□ -0.43
USP39-208ENST00000455732 RNASE8Q8TDE3 154 aaKnown RBP12.34□□□□□ -0.43
USP39-208ENST00000455732 RXFP4Q8TDU9 374 aa12.34□□□□□ -0.43
USP39-208ENST00000455732 TMEM263Q8WUH6 116 aaKnown RBP12.34□□□□□ -0.43
USP39-208ENST00000455732 VGLL1Q99990 258 aa12.34□□□□□ -0.43
USP39-208ENST00000455732 ZNF492Q9P255 531 aa12.34□□□□□ -0.43
USP39-208ENST00000455732 C7orf71A4D174 169 aa12.33□□□□□ -0.44
USP39-208ENST00000455732 IGLL5B9A064 214 aa12.33□□□□□ -0.44
USP39-208ENST00000455732 SMLR1H3BR10 107 aa12.33□□□□□ -0.44
USP39-208ENST00000455732 ARL14EPLP0DKL9 152 aa12.33□□□□□ -0.44
USP39-208ENST00000455732 SUN5Q8TC36 379 aa12.33□□□□□ -0.44
USP39-208ENST00000455732 RAB24Q969Q5 203 aa12.33□□□□□ -0.44
USP39-208ENST00000455732 CYTL1Q9NRR1 136 aa12.33□□□□□ -0.44
USP39-208ENST00000455732 TRAV12-3A0A0B4J271 114 aa12.32□□□□□ -0.44
USP39-208ENST00000455732 HMSDA8MTL9 139 aa12.32□□□□□ -0.44
USP39-208ENST00000455732 DIRC3C9JPN6 131 aa12.32□□□□□ -0.44
USP39-208ENST00000455732 HMGB3O15347 200 aaKnown RBP12.32□□□□□ -0.44
USP39-208ENST00000455732 ZNF138P52744 262 aa12.32□□□□□ -0.44
USP39-208ENST00000455732 FAM74A1Q5RGS3 127 aa12.32□□□□□ -0.44
USP39-208ENST00000455732 ZFAND2AQ8N6M9 145 aa12.32□□□□□ -0.44
USP39-208ENST00000455732 PYGO2Q9BRQ0 406 aa12.32□□□□□ -0.44
USP39-208ENST00000455732 ACTR3CQ9C0K3 210 aaPredicted RBP12.32□□□□□ -0.44
USP39-208ENST00000455732 IGHV4-4A0A075B6R2 117 aa12.31□□□□□ -0.44
USP39-208ENST00000455732 J3KRW8 73 aa12.31□□□□□ -0.44
USP39-208ENST00000455732 ZNF324O75467 553 aaPredicted RBP12.31□□□□□ -0.44
USP39-208ENST00000455732 DAD1P61803 113 aa12.31□□□□□ -0.44
USP39-208ENST00000455732 KCNRGQ8N5I3 272 aa12.31□□□□□ -0.44
USP39-208ENST00000455732 TMED6Q8WW62 240 aa12.31□□□□□ -0.44
USP39-208ENST00000455732 FAM210BQ96KR6 192 aa12.31□□□□□ -0.44
USP39-208ENST00000455732 LINC00467Q9BRT7 94 aa12.31□□□□□ -0.44
USP39-208ENST00000455732 PGPA6NDG6 321 aa12.3□□□□□ -0.44
USP39-208ENST00000455732 HTN1P15515 57 aa12.3□□□□□ -0.44
USP39-208ENST00000455732 GCHFRP30047 84 aa12.3□□□□□ -0.44
USP39-208ENST00000455732 CD300CQ08708 224 aa12.3□□□□□ -0.44
USP39-208ENST00000455732 BTN1A1Q13410 526 aa12.3□□□□□ -0.44
USP39-208ENST00000455732 CCDC28AQ8IWP9 274 aa12.3□□□□□ -0.44
USP39-208ENST00000455732 OR11H4Q8NGC9 324 aa12.3□□□□□ -0.44
USP39-208ENST00000455732 CMTM2Q8TAZ6 248 aa12.3□□□□□ -0.44
USP39-208ENST00000455732 PLA2G2EQ9NZK7 142 aa12.3□□□□□ -0.44
USP39-208ENST00000455732 TIMM8BQ9Y5J9 83 aaPredicted RBP12.3□□□□□ -0.44
USP39-208ENST00000455732 LENEPQ9Y5L5 61 aa12.3□□□□□ -0.44
USP39-208ENST00000455732 DNAH6Q9C0G6 4158 aa12.29□□□□□ -0.44
USP39-208ENST00000455732 CXorf1O96002 111 aa12.29□□□□□ -0.44
USP39-208ENST00000455732 GPX1P07203 203 aa12.29□□□□□ -0.44
USP39-208ENST00000455732 PRR9Q5T870 116 aa12.29□□□□□ -0.44
USP39-208ENST00000455732 Q8TAT8 98 aa12.29□□□□□ -0.44
USP39-208ENST00000455732 ST6GAL2Q96JF0 529 aa12.29□□□□□ -0.44
USP39-208ENST00000455732 HYLS1Q96M11 299 aa12.29□□□□□ -0.44
USP39-208ENST00000455732 ARPC5LQ9BPX5 153 aa12.29□□□□□ -0.44
USP39-208ENST00000455732 TMEM167BQ9NRX6 74 aa12.29□□□□□ -0.44
USP39-208ENST00000455732 CTXND1A0A1B0GTU2 59 aa12.28□□□□□ -0.44
USP39-208ENST00000455732 RNASE4P34096 147 aaKnown RBP12.28□□□□□ -0.44
USP39-208ENST00000455732 ZNF726P1Q15940 193 aa12.28□□□□□ -0.44
USP39-208ENST00000455732 SSX7Q7RTT5 188 aa12.28□□□□□ -0.44
USP39-208ENST00000455732 FRAS1Q86XX4 4008 aa12.28□□□□□ -0.44
USP39-208ENST00000455732 A0A0D9SG52 128 aa12.27□□□□□ -0.45
USP39-208ENST00000455732 SERTM2A0A1B0GWG4 89 aa12.27□□□□□ -0.45
USP39-208ENST00000455732 ANXA2RQ3ZCQ2 193 aa12.27□□□□□ -0.45
USP39-208ENST00000455732 AKR1C8PQ5T2L2 129 aa12.27□□□□□ -0.45
USP39-208ENST00000455732 LINC00612Q8N6U2 182 aa12.27□□□□□ -0.45
USP39-208ENST00000455732 ZNF680Q8NEM1 530 aa12.27□□□□□ -0.45
USP39-208ENST00000455732 NDUFAF3Q9BU61 184 aa12.27□□□□□ -0.45
USP39-208ENST00000455732 DEFB130BP0DP73 79 aa12.26□□□□□ -0.45
USP39-208ENST00000455732 DEFB130AP0DP74 79 aa12.26□□□□□ -0.45
USP39-208ENST00000455732 EIF4E3Q8N5X7 224 aaKnown RBP12.26□□□□□ -0.45
USP39-208ENST00000455732 C5orf17Q8NAS9 161 aa12.26□□□□□ -0.45
USP39-208ENST00000455732 NOP10Q9NPE3 64 aaKnown RBP12.26□□□□□ -0.45
USP39-208ENST00000455732 DNAH10Q8IVF4 4471 aa12.26□□□□□ -0.45
USP39-208ENST00000455732 SNURFLB1AK76 121 aa12.25□□□□□ -0.45
USP39-208ENST00000455732 BCL2L11O43521 198 aa12.25□□□□□ -0.45
USP39-208ENST00000455732 DAZ2Q13117 558 aaKnown RBP12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 190.7 ms