RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 IGKV2D-40P01614 121 aaPredicted RBP14.33□□□□□ -0.12
COL9A3-202ENST00000452372 GCHFRP30047 84 aa14.33□□□□□ -0.12
COL9A3-202ENST00000452372 LEPP41159 167 aa14.33□□□□□ -0.12
COL9A3-202ENST00000452372 NANOS2P60321 138 aaKnown RBP14.33□□□□□ -0.12
COL9A3-202ENST00000452372 PMS2P11Q13670 270 aa14.33□□□□□ -0.12
COL9A3-202ENST00000452372 KIR3DS1Q14943 382 aa14.33□□□□□ -0.12
COL9A3-202ENST00000452372 ZNF726P1Q15940 193 aa14.33□□□□□ -0.12
COL9A3-202ENST00000452372 RRN3P1Q2M238 152 aa14.33□□□□□ -0.12
COL9A3-202ENST00000452372 FAM74A1Q5RGS3 127 aa14.33□□□□□ -0.12
COL9A3-202ENST00000452372 SSX7Q7RTT5 188 aa14.33□□□□□ -0.12
COL9A3-202ENST00000452372 TMEM256Q8N2U0 113 aa14.33□□□□□ -0.12
COL9A3-202ENST00000452372 FAM19A4Q96LR4 140 aa14.33□□□□□ -0.12
COL9A3-202ENST00000452372 ZNF471Q9BX82 626 aaPredicted RBP14.33□□□□□ -0.12
COL9A3-202ENST00000452372 RBAKDNA6NC62 111 aa14.32□□□□□ -0.12
COL9A3-202ENST00000452372 C1QBP02746 253 aa14.32□□□□□ -0.12
COL9A3-202ENST00000452372 TMEM78Q5T7P6 136 aa14.32□□□□□ -0.12
COL9A3-202ENST00000452372 AKAP14Q86UN6 197 aa14.32□□□□□ -0.12
COL9A3-202ENST00000452372 LINC01587Q99440 93 aa14.32□□□□□ -0.12
COL9A3-202ENST00000452372 VGLL1Q99990 258 aa14.32□□□□□ -0.12
COL9A3-202ENST00000452372 C20orf144Q9BQM9 153 aa14.32□□□□□ -0.12
COL9A3-202ENST00000452372 TMEM167BQ9NRX6 74 aa14.32□□□□□ -0.12
COL9A3-202ENST00000452372 DIRC3C9JPN6 131 aa14.31□□□□□ -0.12
COL9A3-202ENST00000452372 PFDN1O60925 122 aa14.31□□□□□ -0.12
COL9A3-202ENST00000452372 SLC25A5P05141 298 aaKnown RBP14.31□□□□□ -0.12
COL9A3-202ENST00000452372 SEC11BP0C7V7 166 aa14.31□□□□□ -0.12
COL9A3-202ENST00000452372 EIF5AP63241 154 aaKnown RBP14.31□□□□□ -0.12
COL9A3-202ENST00000452372 LGALSLQ3ZCW2 172 aaPredicted RBP14.31□□□□□ -0.12
COL9A3-202ENST00000452372 GFI1BQ5VTD9 330 aa14.31□□□□□ -0.12
COL9A3-202ENST00000452372 ARL6IP6Q8N6S5 226 aa14.31□□□□□ -0.12
COL9A3-202ENST00000452372 HYLS1Q96M11 299 aa14.31□□□□□ -0.12
COL9A3-202ENST00000452372 LOC102723971A0A1B0GUV8 181 aa14.3□□□□□ -0.12
COL9A3-202ENST00000452372 ZNF705GA8MUZ8 300 aaPredicted RBP14.3□□□□□ -0.12
COL9A3-202ENST00000452372 CMTM2Q8TAZ6 248 aa14.3□□□□□ -0.12
COL9A3-202ENST00000452372 ZNF492Q9P255 531 aa14.3□□□□□ -0.12
COL9A3-202ENST00000452372 NUPR2A6NF83 97 aa14.29□□□□□ -0.12
COL9A3-202ENST00000452372 H7BYZ3 331 aa14.29□□□□□ -0.12
COL9A3-202ENST00000452372 PRM2P04554 102 aa14.29□□□□□ -0.12
COL9A3-202ENST00000452372 NMBP08949 121 aa14.29□□□□□ -0.12
COL9A3-202ENST00000452372 CRISP2P16562 243 aa14.29□□□□□ -0.12
COL9A3-202ENST00000452372 ZNF138P52744 262 aa14.29□□□□□ -0.12
COL9A3-202ENST00000452372 EMP1P54849 157 aa14.29□□□□□ -0.12
COL9A3-202ENST00000452372 TAS2R60P59551 318 aa14.29□□□□□ -0.12
COL9A3-202ENST00000452372 CEMP1Q6PRD7 247 aaPredicted RBP14.29□□□□□ -0.12
COL9A3-202ENST00000452372 PHLDA1Q8WV24 401 aaPredicted RBP14.29□□□□□ -0.12
COL9A3-202ENST00000452372 PLA2G2EQ9NZK7 142 aa14.29□□□□□ -0.12
COL9A3-202ENST00000452372 CELA1Q9UNI1 258 aa14.29□□□□□ -0.12
COL9A3-202ENST00000452372 TRBV7-9A0A0J9YWB2 115 aa14.28□□□□□ -0.12
COL9A3-202ENST00000452372 KLLNB2CW77 178 aa14.28□□□□□ -0.12
COL9A3-202ENST00000452372 J3KRW8 73 aa14.28□□□□□ -0.12
COL9A3-202ENST00000452372 SPART-AS1P0CW21 52 aa14.28□□□□□ -0.12
COL9A3-202ENST00000452372 FRAS1Q86XX4 4008 aa14.28□□□□□ -0.12
COL9A3-202ENST00000452372 TRAV12-3A0A0B4J271 114 aa14.27□□□□□ -0.13
COL9A3-202ENST00000452372 UMAD1C9J7I0 102 aa14.27□□□□□ -0.13
COL9A3-202ENST00000452372 TPT1P13693 172 aaKnown RBP14.27□□□□□ -0.13
COL9A3-202ENST00000452372 IQCF2Q8IXL9 164 aa14.27□□□□□ -0.13
COL9A3-202ENST00000452372 STOML3Q8TAV4 291 aa14.27□□□□□ -0.13
COL9A3-202ENST00000452372 A0A1B0GVG6 124 aa14.26□□□□□ -0.13
COL9A3-202ENST00000452372 GPX1P07203 203 aa14.26□□□□□ -0.13
COL9A3-202ENST00000452372 AZU1P20160 251 aa14.26□□□□□ -0.13
COL9A3-202ENST00000452372 C12orf74Q32Q52 190 aa14.26□□□□□ -0.13
COL9A3-202ENST00000452372 ZFAND2AQ8N6M9 145 aa14.26□□□□□ -0.13
COL9A3-202ENST00000452372 TMED6Q8WW62 240 aa14.26□□□□□ -0.13
COL9A3-202ENST00000452372 NIPSNAP3BQ9BS92 247 aa14.26□□□□□ -0.13
COL9A3-202ENST00000452372 TMPRSS5Q9H3S3 457 aa14.26□□□□□ -0.13
COL9A3-202ENST00000452372 DKK2Q9UBU2 259 aa14.26□□□□□ -0.13
COL9A3-202ENST00000452372 YTHDF2Q9Y5A9 579 aaKnown RBP14.26□□□□□ -0.13
COL9A3-202ENST00000452372 TEX48A0A1B0GUV7 120 aa14.25□□□□□ -0.13
COL9A3-202ENST00000452372 A0A1W2PRE2 83 aa14.25□□□□□ -0.13
COL9A3-202ENST00000452372 C7orf71A4D174 169 aa14.25□□□□□ -0.13
COL9A3-202ENST00000452372 MAP1LC3B2A6NCE7 125 aa14.25□□□□□ -0.13
COL9A3-202ENST00000452372 C11orf94C9JXX5 98 aa14.25□□□□□ -0.13
COL9A3-202ENST00000452372 ZNF324O75467 553 aaPredicted RBP14.25□□□□□ -0.13
COL9A3-202ENST00000452372 HTN1P15515 57 aa14.25□□□□□ -0.13
COL9A3-202ENST00000452372 FHITP49789 147 aa14.25□□□□□ -0.13
COL9A3-202ENST00000452372 FGF8P55075 233 aaPredicted RBP14.25□□□□□ -0.13
COL9A3-202ENST00000452372 SUMO1P63165 101 aaKnown RBP14.25□□□□□ -0.13
COL9A3-202ENST00000452372 CD300CQ08708 224 aa14.25□□□□□ -0.13
COL9A3-202ENST00000452372 GOLT1AQ6ZVE7 132 aa14.25□□□□□ -0.13
COL9A3-202ENST00000452372 C5orf17Q8NAS9 161 aa14.25□□□□□ -0.13
COL9A3-202ENST00000452372 Q8TAT8 98 aa14.25□□□□□ -0.13
COL9A3-202ENST00000452372 LINC00476Q8WZB0 136 aa14.25□□□□□ -0.13
COL9A3-202ENST00000452372 MAP1LC3BQ9GZQ8 125 aa14.25□□□□□ -0.13
COL9A3-202ENST00000452372 RPH3ALQ9UNE2 315 aa14.25□□□□□ -0.13
COL9A3-202ENST00000452372 KLK5Q9Y337 293 aaPredicted RBP14.25□□□□□ -0.13
COL9A3-202ENST00000452372 LENEPQ9Y5L5 61 aa14.25□□□□□ -0.13
COL9A3-202ENST00000452372 DNAH10Q8IVF4 4471 aa14.24□□□□□ -0.13
COL9A3-202ENST00000452372 RNASE4P34096 147 aaKnown RBP14.24□□□□□ -0.13
COL9A3-202ENST00000452372 BTN1A1Q13410 526 aa14.24□□□□□ -0.13
COL9A3-202ENST00000452372 FAM222AQ5U5X8 452 aa14.24□□□□□ -0.13
COL9A3-202ENST00000452372 ZNF493Q6ZR52 646 aa14.24□□□□□ -0.13
COL9A3-202ENST00000452372 Q6ZTC4 211 aa14.24□□□□□ -0.13
COL9A3-202ENST00000452372 VPS13DQ5THJ4 4388 aa14.23□□□□□ -0.13
COL9A3-202ENST00000452372 SERTM2A0A1B0GWG4 89 aa14.23□□□□□ -0.13
COL9A3-202ENST00000452372 PLAC8L1A1L4L8 177 aa14.23□□□□□ -0.13
COL9A3-202ENST00000452372 GGTLC3B5MD39 225 aa14.23□□□□□ -0.13
COL9A3-202ENST00000452372 GNG5P63218 68 aa14.23□□□□□ -0.13
COL9A3-202ENST00000452372 DPPA3Q6W0C5 159 aa14.23□□□□□ -0.13
COL9A3-202ENST00000452372 MBD3L1Q8WWY6 194 aa14.23□□□□□ -0.13
COL9A3-202ENST00000452372 C16orf74Q96GX8 76 aa14.23□□□□□ -0.13
COL9A3-202ENST00000452372 PYGO2Q9BRQ0 406 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms