RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	SSNA1	O43805	119 aa		6.11	□□□□□ -1.43
RFX3-209	ENST00000451859	MPDU1	O75352	247 aa		6.11	□□□□□ -1.43
RFX3-209	ENST00000451859	ATP5G1	P05496	136 aa		6.11	□□□□□ -1.43
RFX3-209	ENST00000451859	HOXA5	P20719	270 aa		6.11	□□□□□ -1.43
RFX3-209	ENST00000451859	LEP	P41159	167 aa		6.11	□□□□□ -1.43
RFX3-209	ENST00000451859	ATP5G3	P48201	142 aa		6.11	□□□□□ -1.43
RFX3-209	ENST00000451859	ERCC8	Q13216	396 aa		6.11	□□□□□ -1.43
RFX3-209	ENST00000451859	MIR17HG	Q75NE6	70 aa		6.11	□□□□□ -1.43
RFX3-209	ENST00000451859	CCDC28A	Q8IWP9	274 aa		6.11	□□□□□ -1.43
RFX3-209	ENST00000451859	RNASE8	Q8TDE3	154 aa	Known RBP	6.11	□□□□□ -1.43
RFX3-209	ENST00000451859	TMEM263	Q8WUH6	116 aa	Known RBP	6.11	□□□□□ -1.43
RFX3-209	ENST00000451859	FAM210B	Q96KR6	192 aa		6.11	□□□□□ -1.43
RFX3-209	ENST00000451859	SMIM3	Q9BZL3	60 aa		6.11	□□□□□ -1.43
RFX3-209	ENST00000451859	NMES1	Q9C002	83 aa		6.11	□□□□□ -1.43
RFX3-209	ENST00000451859	SLC25A31	Q9H0C2	315 aa		6.11	□□□□□ -1.43
RFX3-209	ENST00000451859	TIMM8B	Q9Y5J9	83 aa	Predicted RBP	6.11	□□□□□ -1.43
RFX3-209	ENST00000451859	PKD1	P98161	4303 aa		6.1	□□□□□ -1.43
RFX3-209	ENST00000451859	HERC2	O95714	4834 aa		6.1	□□□□□ -1.43
RFX3-209	ENST00000451859	TRBV19	A0A075B6N1	114 aa		6.1	□□□□□ -1.43
RFX3-209	ENST00000451859	GAGE12B	A1L429	117 aa		6.1	□□□□□ -1.43
RFX3-209	ENST00000451859	SNURFL	B1AK76	121 aa		6.1	□□□□□ -1.43
RFX3-209	ENST00000451859	PRAF2	O60831	178 aa		6.1	□□□□□ -1.43
RFX3-209	ENST00000451859	GAGE7	O76087	117 aa		6.1	□□□□□ -1.43
RFX3-209	ENST00000451859	NDUFB4	O95168	129 aa		6.1	□□□□□ -1.43
RFX3-209	ENST00000451859	OR10J4	P0C629	311 aa		6.1	□□□□□ -1.43
RFX3-209	ENST00000451859	GAGE12F	P0CL80	117 aa		6.1	□□□□□ -1.43
RFX3-209	ENST00000451859	GAGE12G	P0CL81	117 aa		6.1	□□□□□ -1.43
RFX3-209	ENST00000451859	GAGE12I	P0CL82	117 aa		6.1	□□□□□ -1.43
RFX3-209	ENST00000451859	HIST1H1E	P10412	219 aa	Known RBP	6.1	□□□□□ -1.43
RFX3-209	ENST00000451859	H2BFS	P57053	126 aa		6.1	□□□□□ -1.43
RFX3-209	ENST00000451859	OR5I1	Q13606	314 aa		6.1	□□□□□ -1.43
RFX3-209	ENST00000451859	ICAM4	Q14773	271 aa		6.1	□□□□□ -1.43
RFX3-209	ENST00000451859	FAM122C	Q6P4D5	195 aa		6.1	□□□□□ -1.43
RFX3-209	ENST00000451859	C15orf53	Q8NAA6	179 aa		6.1	□□□□□ -1.43
RFX3-209	ENST00000451859	PPP1R1C	Q8WVI7	109 aa		6.1	□□□□□ -1.43
RFX3-209	ENST00000451859	SLC25A2	Q9BXI2	301 aa		6.1	□□□□□ -1.43
RFX3-209	ENST00000451859	AAMDC	Q9H7C9	122 aa		6.1	□□□□□ -1.43
RFX3-209	ENST00000451859	KIAA1109	Q2LD37	5005 aa		6.1	□□□□□ -1.43
RFX3-209	ENST00000451859	DYNC1H1	Q14204	4646 aa	Known RBP	6.09	□□□□□ -1.43
RFX3-209	ENST00000451859	IGKV2-40	A0A087WW87	121 aa	Predicted RBP	6.09	□□□□□ -1.43
RFX3-209	ENST00000451859	CBY3	A6NI87	242 aa		6.09	□□□□□ -1.43
RFX3-209	ENST00000451859	PRSS29P	A6NIE9	313 aa		6.09	□□□□□ -1.43
RFX3-209	ENST00000451859	RTL8C	O15255	209 aa		6.09	□□□□□ -1.43
RFX3-209	ENST00000451859	OR7C2	O60412	319 aa		6.09	□□□□□ -1.43
RFX3-209	ENST00000451859	EIF3G	O75821	320 aa	Known RBP eCLIP	6.09	□□□□□ -1.43
RFX3-209	ENST00000451859	IGKV2D-40	P01614	121 aa	Predicted RBP	6.09	□□□□□ -1.43
RFX3-209	ENST00000451859	DEFA1	P59665	94 aa		6.09	□□□□□ -1.43
RFX3-209	ENST00000451859	DEFA3	P59666	94 aa		6.09	□□□□□ -1.43
RFX3-209	ENST00000451859	CYCS	P99999	105 aa	Known RBP	6.09	□□□□□ -1.43
RFX3-209	ENST00000451859	BTN1A1	Q13410	526 aa		6.09	□□□□□ -1.43
RFX3-209	ENST00000451859	ZNF493	Q6ZR52	646 aa		6.09	□□□□□ -1.43
RFX3-209	ENST00000451859	LINC00336	Q6ZUF6	198 aa		6.09	□□□□□ -1.43
RFX3-209	ENST00000451859	RNF141	Q8WVD5	230 aa		6.09	□□□□□ -1.43
RFX3-209	ENST00000451859	MRPL53	Q96EL3	112 aa	Known RBP	6.09	□□□□□ -1.43
RFX3-209	ENST00000451859	C20orf144	Q9BQM9	153 aa		6.09	□□□□□ -1.43
RFX3-209	ENST00000451859	WDR61	Q9GZS3	305 aa	Known RBP	6.09	□□□□□ -1.43
RFX3-209	ENST00000451859	TMEM14C	Q9P0S9	112 aa		6.09	□□□□□ -1.43
RFX3-209	ENST00000451859		A0A0J9YY99	117 aa		6.08	□□□□□ -1.44
RFX3-209	ENST00000451859	C7orf71	A4D174	169 aa		6.08	□□□□□ -1.44
RFX3-209	ENST00000451859	C17orf112	F2Z3M2	114 aa		6.08	□□□□□ -1.44
RFX3-209	ENST00000451859	ZNF253	O75346	499 aa		6.08	□□□□□ -1.44
RFX3-209	ENST00000451859	MPC2	O95563	127 aa		6.08	□□□□□ -1.44
RFX3-209	ENST00000451859	RNASE4	P34096	147 aa	Known RBP	6.08	□□□□□ -1.44
RFX3-209	ENST00000451859	CD300C	Q08708	224 aa		6.08	□□□□□ -1.44
RFX3-209	ENST00000451859	LGALS9B	Q3B8N2	356 aa		6.08	□□□□□ -1.44
RFX3-209	ENST00000451859	RNF212	Q495C1	297 aa		6.08	□□□□□ -1.44
RFX3-209	ENST00000451859	FFAR4	Q5NUL3	377 aa		6.08	□□□□□ -1.44
RFX3-209	ENST00000451859		Q8TAT8	98 aa		6.08	□□□□□ -1.44
RFX3-209	ENST00000451859	CHAC2	Q8WUX2	184 aa		6.08	□□□□□ -1.44
RFX3-209	ENST00000451859	PHYHIPL	Q96FC7	376 aa		6.08	□□□□□ -1.44
RFX3-209	ENST00000451859	FAM167A-AS1	Q96KT0	104 aa		6.08	□□□□□ -1.44
RFX3-209	ENST00000451859	ODF3	Q96PU9	254 aa		6.08	□□□□□ -1.44
RFX3-209	ENST00000451859	ATP5S	Q99766	215 aa		6.08	□□□□□ -1.44
RFX3-209	ENST00000451859	MARVELD1	Q9BSK0	173 aa		6.08	□□□□□ -1.44
RFX3-209	ENST00000451859	PAXX	Q9BUH6	204 aa		6.08	□□□□□ -1.44
RFX3-209	ENST00000451859	AGPAT4-IT1	Q9H0P7	198 aa		6.08	□□□□□ -1.44
RFX3-209	ENST00000451859	OR51M1	Q9H341	326 aa		6.08	□□□□□ -1.44
RFX3-209	ENST00000451859	KCNIP2	Q9NS61	270 aa		6.08	□□□□□ -1.44
RFX3-209	ENST00000451859	MBD2	Q9UBB5	411 aa		6.08	□□□□□ -1.44
RFX3-209	ENST00000451859	FUT9	Q9Y231	359 aa		6.08	□□□□□ -1.44
RFX3-209	ENST00000451859	PRELID1	Q9Y255	219 aa		6.08	□□□□□ -1.44
RFX3-209	ENST00000451859	HSPB11	Q9Y547	144 aa		6.08	□□□□□ -1.44
RFX3-209	ENST00000451859	TRAV26-1	A0A087WT03	109 aa		6.07	□□□□□ -1.44
RFX3-209	ENST00000451859	SLC25A5	P05141	298 aa	Known RBP	6.07	□□□□□ -1.44
RFX3-209	ENST00000451859	GPX1	P07203	203 aa		6.07	□□□□□ -1.44
RFX3-209	ENST00000451859	NBEAP1	P0C6P0	100 aa		6.07	□□□□□ -1.44
RFX3-209	ENST00000451859	PET100	P0DJ07	73 aa		6.07	□□□□□ -1.44
RFX3-209	ENST00000451859	MED14OS	P0DP75	135 aa		6.07	□□□□□ -1.44
RFX3-209	ENST00000451859	KRTAP10-2	P60368	255 aa		6.07	□□□□□ -1.44
RFX3-209	ENST00000451859	UBE2L3	P68036	154 aa	Known RBP	6.07	□□□□□ -1.44
RFX3-209	ENST00000451859	PDE6H	Q13956	83 aa		6.07	□□□□□ -1.44
RFX3-209	ENST00000451859	TMEM78	Q5T7P6	136 aa		6.07	□□□□□ -1.44
RFX3-209	ENST00000451859	PRR9	Q5T870	116 aa		6.07	□□□□□ -1.44
RFX3-209	ENST00000451859		Q6ZR54	194 aa		6.07	□□□□□ -1.44
RFX3-209	ENST00000451859		Q6ZTI0	123 aa		6.07	□□□□□ -1.44
RFX3-209	ENST00000451859	SCGB1C1	Q8TD33	95 aa		6.07	□□□□□ -1.44
RFX3-209	ENST00000451859	FXYD5	Q96DB9	178 aa		6.07	□□□□□ -1.44
RFX3-209	ENST00000451859	VGLL1	Q99990	258 aa		6.07	□□□□□ -1.44
RFX3-209	ENST00000451859	PYGO2	Q9BRQ0	406 aa		6.07	□□□□□ -1.44
RFX3-209	ENST00000451859	MRPL32	Q9BYC8	188 aa	Known RBP	6.07	□□□□□ -1.44

Retrieved 100 of 20,778 RNA–protein pairs in 94.7 ms