RNA–Protein interactions for RNA: ENST00000446625.6

LIMCH1-204, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 5

Gene LIMCH1, Length 789 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-204ENST00000446625 IQCF2Q8IXL9 164 aa5.09□□□□□ -1.59
LIMCH1-204ENST00000446625 ZNF479Q96JC4 524 aa5.09□□□□□ -1.59
LIMCH1-204ENST00000446625 SOSTQ9BQB4 213 aa5.09□□□□□ -1.59
LIMCH1-204ENST00000446625 TXNDC17Q9BRA2 123 aa5.09□□□□□ -1.59
LIMCH1-204ENST00000446625 ARL6Q9H0F7 186 aa5.09□□□□□ -1.59
LIMCH1-204ENST00000446625 MCUBQ9NWR8 336 aa5.09□□□□□ -1.59
LIMCH1-204ENST00000446625 KCNIP3Q9Y2W7 256 aa5.09□□□□□ -1.59
LIMCH1-204ENST00000446625 V9GYH0 126 aa5.09□□□□□ -1.59
LIMCH1-204ENST00000446625 LOC100131303A0A0U1RQF7 123 aa5.08□□□□□ -1.6
LIMCH1-204ENST00000446625 SMCO3A2RU48 225 aa5.08□□□□□ -1.6
LIMCH1-204ENST00000446625 KLLNB2CW77 178 aa5.08□□□□□ -1.6
LIMCH1-204ENST00000446625 H3BP45 60 aa5.08□□□□□ -1.6
LIMCH1-204ENST00000446625 MPDU1O75352 247 aa5.08□□□□□ -1.6
LIMCH1-204ENST00000446625 AKAIN1P0CW23 69 aa5.08□□□□□ -1.6
LIMCH1-204ENST00000446625 S100A5P33763 92 aa5.08□□□□□ -1.6
LIMCH1-204ENST00000446625 RNASE4P34096 147 aaKnown RBP5.08□□□□□ -1.6
LIMCH1-204ENST00000446625 TIRAPP58753 221 aa5.08□□□□□ -1.6
LIMCH1-204ENST00000446625 ERCC8Q13216 396 aa5.08□□□□□ -1.6
LIMCH1-204ENST00000446625 ASAH1Q13510 395 aa5.08□□□□□ -1.6
LIMCH1-204ENST00000446625 ACOT6Q3I5F7 207 aaPredicted RBP5.08□□□□□ -1.6
LIMCH1-204ENST00000446625 IBA57Q5T440 356 aaKnown RBP5.08□□□□□ -1.6
LIMCH1-204ENST00000446625 MORN5Q5VZ52 161 aa5.08□□□□□ -1.6
LIMCH1-204ENST00000446625 Q6ZQT7 251 aa5.08□□□□□ -1.6
LIMCH1-204ENST00000446625 SMIM4Q8WVI0 70 aa5.08□□□□□ -1.6
LIMCH1-204ENST00000446625 S100ZQ8WXG8 99 aa5.08□□□□□ -1.6
LIMCH1-204ENST00000446625 TM2D2Q9BX73 214 aa5.08□□□□□ -1.6
LIMCH1-204ENST00000446625 ARV1Q9H2C2 271 aa5.08□□□□□ -1.6
LIMCH1-204ENST00000446625 PXMP4Q9Y6I8 212 aa5.08□□□□□ -1.6
LIMCH1-204ENST00000446625 RBFOX3A6NFN3 312 aa5.07□□□□□ -1.6
LIMCH1-204ENST00000446625 C9JCJ5 164 aa5.07□□□□□ -1.6
LIMCH1-204ENST00000446625 H3BQ15 152 aa5.07□□□□□ -1.6
LIMCH1-204ENST00000446625 WRBO00258 174 aa5.07□□□□□ -1.6
LIMCH1-204ENST00000446625 RGS13O14921 159 aa5.07□□□□□ -1.6
LIMCH1-204ENST00000446625 IGLV2-11P01706 119 aa5.07□□□□□ -1.6
LIMCH1-204ENST00000446625 PPT1P50897 306 aa5.07□□□□□ -1.6
LIMCH1-204ENST00000446625 SELENOTP62341 195 aa5.07□□□□□ -1.6
LIMCH1-204ENST00000446625 RPP30P78346 268 aaKnown RBP5.07□□□□□ -1.6
LIMCH1-204ENST00000446625 ZNF846Q147U1 533 aa5.07□□□□□ -1.6
LIMCH1-204ENST00000446625 TDRG1Q3Y452 100 aa5.07□□□□□ -1.6
LIMCH1-204ENST00000446625 SPANXN5Q5MJ07 72 aa5.07□□□□□ -1.6
LIMCH1-204ENST00000446625 LINC00305Q7Z4B0 112 aa5.07□□□□□ -1.6
LIMCH1-204ENST00000446625 OR10P1Q8NGE3 313 aa5.07□□□□□ -1.6
LIMCH1-204ENST00000446625 BAALCQ8WXS3 180 aa5.07□□□□□ -1.6
LIMCH1-204ENST00000446625 SAT2Q96F10 170 aaPredicted RBP5.07□□□□□ -1.6
LIMCH1-204ENST00000446625 DIRAS2Q96HU8 199 aa5.07□□□□□ -1.6
LIMCH1-204ENST00000446625 FAM19A4Q96LR4 140 aa5.07□□□□□ -1.6
LIMCH1-204ENST00000446625 CIB3Q96Q77 187 aaPredicted RBP5.07□□□□□ -1.6
LIMCH1-204ENST00000446625 SDHCQ99643 169 aaPredicted RBP5.07□□□□□ -1.6
LIMCH1-204ENST00000446625 KRTAP9-2Q9BYQ4 174 aa5.07□□□□□ -1.6
LIMCH1-204ENST00000446625 SLC25A31Q9H0C2 315 aa5.07□□□□□ -1.6
LIMCH1-204ENST00000446625 IGHV1OR15-1A0A075B7D0 117 aa5.06□□□□□ -1.6
LIMCH1-204ENST00000446625 TRAV8-6A0A0B4J262 113 aa5.06□□□□□ -1.6
LIMCH1-204ENST00000446625 SYNGR2O43760 224 aa5.06□□□□□ -1.6
LIMCH1-204ENST00000446625 MED6O75586 246 aa5.06□□□□□ -1.6
LIMCH1-204ENST00000446625 GAS8-AS1O95177 125 aa5.06□□□□□ -1.6
LIMCH1-204ENST00000446625 OR4E1P0C645 316 aa5.06□□□□□ -1.6
LIMCH1-204ENST00000446625 IGLC2P0DOY2 106 aa5.06□□□□□ -1.6
LIMCH1-204ENST00000446625 VAMP1P23763 118 aa5.06□□□□□ -1.6
LIMCH1-204ENST00000446625 IFITM3Q01628 133 aa5.06□□□□□ -1.6
LIMCH1-204ENST00000446625 LAGE3Q14657 143 aa5.06□□□□□ -1.6
LIMCH1-204ENST00000446625 C4orf46Q504U0 113 aa5.06□□□□□ -1.6
LIMCH1-204ENST00000446625 OR10J3Q5JRS4 329 aa5.06□□□□□ -1.6
LIMCH1-204ENST00000446625 SPANXN2Q5MJ10 180 aa5.06□□□□□ -1.6
LIMCH1-204ENST00000446625 PRR9Q5T870 116 aa5.06□□□□□ -1.6
LIMCH1-204ENST00000446625 C9orf47Q6ZRZ4 202 aa5.06□□□□□ -1.6
LIMCH1-204ENST00000446625 SH2D6Q7Z4S9 175 aa5.06□□□□□ -1.6
LIMCH1-204ENST00000446625 S100A7AQ86SG5 101 aa5.06□□□□□ -1.6
LIMCH1-204ENST00000446625 BPIFA4PQ86YQ2 179 aa5.06□□□□□ -1.6
LIMCH1-204ENST00000446625 Q8N3U1 123 aa5.06□□□□□ -1.6
LIMCH1-204ENST00000446625 NHLRC2Q8NBF2 726 aa5.06□□□□□ -1.6
LIMCH1-204ENST00000446625 OR10G4Q8NGN3 311 aa5.06□□□□□ -1.6
LIMCH1-204ENST00000446625 PRRT1Q99946 306 aa5.06□□□□□ -1.6
LIMCH1-204ENST00000446625 ARPC5LQ9BPX5 153 aa5.06□□□□□ -1.6
LIMCH1-204ENST00000446625 SRRQ9GZT4 340 aa5.06□□□□□ -1.6
LIMCH1-204ENST00000446625 AGPAT4-IT1Q9H0P7 198 aa5.06□□□□□ -1.6
LIMCH1-204ENST00000446625 RNF24Q9Y225 148 aa5.06□□□□□ -1.6
LIMCH1-204ENST00000446625 ANKRD20A5PA0PJZ0 165 aa5.05□□□□□ -1.6
LIMCH1-204ENST00000446625 FABP12A6NFH5 140 aa5.05□□□□□ -1.6
LIMCH1-204ENST00000446625 M0R3E3 92 aa5.05□□□□□ -1.6
LIMCH1-204ENST00000446625 GPX1P07203 203 aa5.05□□□□□ -1.6
LIMCH1-204ENST00000446625 CRISP2P16562 243 aa5.05□□□□□ -1.6
LIMCH1-204ENST00000446625 SRPXP78539 464 aa5.05□□□□□ -1.6
LIMCH1-204ENST00000446625 SLC38A11Q08AI6 406 aa5.05□□□□□ -1.6
LIMCH1-204ENST00000446625 OPCMLQ14982 345 aa5.05□□□□□ -1.6
LIMCH1-204ENST00000446625 ZFAND2AQ8N6M9 145 aa5.05□□□□□ -1.6
LIMCH1-204ENST00000446625 TMEM37Q8WXS4 190 aa5.05□□□□□ -1.6
LIMCH1-204ENST00000446625 RASL10AQ92737 203 aa5.05□□□□□ -1.6
LIMCH1-204ENST00000446625 LINC00477Q96M19 166 aa5.05□□□□□ -1.6
LIMCH1-204ENST00000446625 CCDC32Q9BV29 185 aa5.05□□□□□ -1.6
LIMCH1-204ENST00000446625 STRAPQ9Y3F4 350 aaKnown RBP5.05□□□□□ -1.6
LIMCH1-204ENST00000446625 K7EPK0 472 aa5.04□□□□□ -1.6
LIMCH1-204ENST00000446625 UPK1BO75841 260 aa5.04□□□□□ -1.6
LIMCH1-204ENST00000446625 HOXB5P09067 269 aa5.04□□□□□ -1.6
LIMCH1-204ENST00000446625 SLC25A6P12236 298 aa5.04□□□□□ -1.6
LIMCH1-204ENST00000446625 ANXA3P12429 323 aa5.04□□□□□ -1.6
LIMCH1-204ENST00000446625 RRAS2P62070 204 aaPredicted RBP5.04□□□□□ -1.6
LIMCH1-204ENST00000446625 MRPS10P82664 201 aaKnown RBP5.04□□□□□ -1.6
LIMCH1-204ENST00000446625 SSBP1Q04837 148 aaKnown RBP5.04□□□□□ -1.6
LIMCH1-204ENST00000446625 ODF1Q14990 250 aa5.04□□□□□ -1.6
LIMCH1-204ENST00000446625 BAK1Q16611 211 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms