RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 C9orf139Q6ZV77 190 aa10.22□□□□□ -0.77
PTCH1-207ENST00000429896 NIT1Q86X76 327 aa10.22□□□□□ -0.77
PTCH1-207ENST00000429896 DMRT1Q9Y5R6 373 aa10.21□□□□□ -0.77
PTCH1-207ENST00000429896 CLPSL1A2RUU4 121 aa10.21□□□□□ -0.78
PTCH1-207ENST00000429896 DPM2O94777 84 aa10.21□□□□□ -0.78
PTCH1-207ENST00000429896 OCC1Q8TAD7 63 aa10.21□□□□□ -0.78
PTCH1-207ENST00000429896 IGKCP01834 107 aa10.21□□□□□ -0.78
PTCH1-207ENST00000429896 CCL20P78556 96 aa10.21□□□□□ -0.78
PTCH1-207ENST00000429896 CYSLTR1Q9Y271 337 aa10.21□□□□□ -0.78
PTCH1-207ENST00000429896 TRAV13-1A0A0B4J241 112 aa10.21□□□□□ -0.78
PTCH1-207ENST00000429896 LGALS1P09382 135 aaKnown RBP10.21□□□□□ -0.78
PTCH1-207ENST00000429896 LURAP1LQ8IV03 231 aa10.21□□□□□ -0.78
PTCH1-207ENST00000429896 MRAPQ8TCY5 172 aa10.21□□□□□ -0.78
PTCH1-207ENST00000429896 SPTBN1Q01082 2364 aaKnown RBP10.21□□□□□ -0.78
PTCH1-207ENST00000429896 TRGV11A0A075B6L2 103 aa10.2□□□□□ -0.78
PTCH1-207ENST00000429896 IGHV7-81A0A0B4J1V7 117 aa10.2□□□□□ -0.78
PTCH1-207ENST00000429896 ODF3BA8MYP8 253 aa10.2□□□□□ -0.78
PTCH1-207ENST00000429896 A6NDX4 124 aa10.2□□□□□ -0.78
PTCH1-207ENST00000429896 KNCNA6PVL3 124 aa10.2□□□□□ -0.78
PTCH1-207ENST00000429896 RITA1Q96K30 269 aa10.2□□□□□ -0.78
PTCH1-207ENST00000429896 ADAMTS20P59510 1910 aa10.2□□□□□ -0.78
PTCH1-207ENST00000429896 A0A096LPF7 62 aa10.2□□□□□ -0.78
PTCH1-207ENST00000429896 COLCA2A8K830 154 aa10.2□□□□□ -0.78
PTCH1-207ENST00000429896 TRAV1-1A0A0B4J248 108 aa10.19□□□□□ -0.78
PTCH1-207ENST00000429896 Q6YL49 198 aa10.19□□□□□ -0.78
PTCH1-207ENST00000429896 C1orf159Q96HA4 380 aa10.19□□□□□ -0.78
PTCH1-207ENST00000429896 M0R2P5 195 aa10.19□□□□□ -0.78
PTCH1-207ENST00000429896 CCL24O00175 119 aa10.19□□□□□ -0.78
PTCH1-207ENST00000429896 ZNF295-AS1Q8N0V1 137 aa10.19□□□□□ -0.78
PTCH1-207ENST00000429896 Q8N9W7 124 aa10.19□□□□□ -0.78
PTCH1-207ENST00000429896 GGTLC3B5MD39 225 aa10.19□□□□□ -0.78
PTCH1-207ENST00000429896 D6R8Y8 96 aa10.19□□□□□ -0.78
PTCH1-207ENST00000429896 TMEM190Q8WZ59 177 aa10.19□□□□□ -0.78
PTCH1-207ENST00000429896 CGB3P0DN86 165 aa10.18□□□□□ -0.78
PTCH1-207ENST00000429896 A0A1W2PRE2 83 aa10.18□□□□□ -0.78
PTCH1-207ENST00000429896 ADCYAP1P18509 176 aa10.18□□□□□ -0.78
PTCH1-207ENST00000429896 CADP27708 2225 aa10.18□□□□□ -0.78
PTCH1-207ENST00000429896 SHANK2-AS3Q9BTD1 123 aa10.18□□□□□ -0.78
PTCH1-207ENST00000429896 UBE2CO00762 179 aa10.18□□□□□ -0.78
PTCH1-207ENST00000429896 TCTEX1D4Q5JR98 221 aa10.18□□□□□ -0.78
PTCH1-207ENST00000429896 EML6Q6ZMW3 1958 aa10.18□□□□□ -0.78
PTCH1-207ENST00000429896 C8orf86Q6ZUL3 223 aa10.17□□□□□ -0.78
PTCH1-207ENST00000429896 C14orf178Q8N769 122 aaPredicted RBP10.17□□□□□ -0.78
PTCH1-207ENST00000429896 ZNF138P52744 262 aa10.17□□□□□ -0.78
PTCH1-207ENST00000429896 LYZL1Q6UWQ5 148 aa10.17□□□□□ -0.78
PTCH1-207ENST00000429896 ODF3L1Q8IXM7 274 aa10.17□□□□□ -0.78
PTCH1-207ENST00000429896 C1QTNF4Q9BXJ3 329 aa10.17□□□□□ -0.78
PTCH1-207ENST00000429896 LINC00574Q9H8X3 128 aa10.17□□□□□ -0.78
PTCH1-207ENST00000429896 YLPM1P49750 1951 aaKnown RBP10.17□□□□□ -0.78
PTCH1-207ENST00000429896 MRPL27Q9P0M9 148 aaKnown RBP10.17□□□□□ -0.78
PTCH1-207ENST00000429896 ATP5L2Q7Z4Y8 100 aa10.17□□□□□ -0.78
PTCH1-207ENST00000429896 LAGE3Q14657 143 aa10.16□□□□□ -0.78
PTCH1-207ENST00000429896 IGLC7A0M8Q6 106 aa10.16□□□□□ -0.78
PTCH1-207ENST00000429896 TMEM242Q9NWH2 141 aa10.16□□□□□ -0.78
PTCH1-207ENST00000429896 TRAV8-1A0A0A6YYK1 113 aa10.16□□□□□ -0.78
PTCH1-207ENST00000429896 GSN-AS1Q9NRJ2 163 aa10.16□□□□□ -0.78
PTCH1-207ENST00000429896 SH2D1AO60880 128 aa10.16□□□□□ -0.78
PTCH1-207ENST00000429896 HOXD3P31249 432 aaPredicted RBP10.16□□□□□ -0.78
PTCH1-207ENST00000429896 hDV102S1A0JD36 115 aa10.16□□□□□ -0.78
PTCH1-207ENST00000429896 STAG3L3P0CL85 134 aa10.16□□□□□ -0.78
PTCH1-207ENST00000429896 PTPRBP23467 1997 aa10.16□□□□□ -0.78
PTCH1-207ENST00000429896 DEFB131AP59861 70 aa10.15□□□□□ -0.78
PTCH1-207ENST00000429896 SSBP2P81877 361 aaPredicted RBP10.15□□□□□ -0.78
PTCH1-207ENST00000429896 CSTL1Q9H114 145 aa10.15□□□□□ -0.78
PTCH1-207ENST00000429896 XCL2Q9UBD3 114 aa10.15□□□□□ -0.78
PTCH1-207ENST00000429896 KLK9Q9UKQ9 250 aa10.15□□□□□ -0.78
PTCH1-207ENST00000429896 MED12LQ86YW9 2145 aa10.15□□□□□ -0.78
PTCH1-207ENST00000429896 TRAV9-1A0A075B6T8 112 aa10.15□□□□□ -0.78
PTCH1-207ENST00000429896 IGLV2-23P01705 113 aa10.15□□□□□ -0.78
PTCH1-207ENST00000429896 DEFB136Q30KP8 78 aa10.15□□□□□ -0.78
PTCH1-207ENST00000429896 SPXQ9BT56 116 aa10.15□□□□□ -0.78
PTCH1-207ENST00000429896 C6orf226Q5I0X4 101 aa10.15□□□□□ -0.78
PTCH1-207ENST00000429896 A0A1W2PPR1 153 aa10.14□□□□□ -0.79
PTCH1-207ENST00000429896 IGHG2P01859 326 aa10.14□□□□□ -0.79
PTCH1-207ENST00000429896 PLNP26678 52 aa10.14□□□□□ -0.79
PTCH1-207ENST00000429896 C9orf66Q5T8R8 295 aa10.14□□□□□ -0.79
PTCH1-207ENST00000429896 CLPSL2Q6UWE3 100 aa10.14□□□□□ -0.79
PTCH1-207ENST00000429896 EDA2RQ9HAV5 297 aa10.14□□□□□ -0.79
PTCH1-207ENST00000429896 F5H768 121 aa10.14□□□□□ -0.79
PTCH1-207ENST00000429896 C1orf194Q5T5A4 169 aa10.14□□□□□ -0.79
PTCH1-207ENST00000429896 IGHV7-4-1A0A0J9YVY3 117 aa10.14□□□□□ -0.79
PTCH1-207ENST00000429896 CGB7P0DN87 165 aa10.14□□□□□ -0.79
PTCH1-207ENST00000429896 TMEM89A2RUT3 159 aa10.14□□□□□ -0.79
PTCH1-207ENST00000429896 ASPHD1Q5U4P2 390 aa10.14□□□□□ -0.79
PTCH1-207ENST00000429896 CYYR1Q96J86 154 aa10.14□□□□□ -0.79
PTCH1-207ENST00000429896 ANAPC13Q9BS18 74 aa10.14□□□□□ -0.79
PTCH1-207ENST00000429896 Q6AWC8 147 aa10.14□□□□□ -0.79
PTCH1-207ENST00000429896 SUMO4Q6EEV6 95 aa10.14□□□□□ -0.79
PTCH1-207ENST00000429896 CRIP3Q6Q6R5 217 aa10.14□□□□□ -0.79
PTCH1-207ENST00000429896 CACNA1DQ01668 2161 aa10.14□□□□□ -0.79
PTCH1-207ENST00000429896 IFI27L1Q96BM0 104 aa10.13□□□□□ -0.79
PTCH1-207ENST00000429896 LAMTOR2Q9Y2Q5 125 aa10.13□□□□□ -0.79
PTCH1-207ENST00000429896 TRAV8-3A0A0A6YYJ7 113 aa10.13□□□□□ -0.79
PTCH1-207ENST00000429896 C10orf91Q5T1B1 145 aa10.13□□□□□ -0.79
PTCH1-207ENST00000429896 IGHV3-38A0A0C4DH36 116 aa10.13□□□□□ -0.79
PTCH1-207ENST00000429896 ANXA2RQ3ZCQ2 193 aa10.13□□□□□ -0.79
PTCH1-207ENST00000429896 LYPD1Q8N2G4 141 aa10.13□□□□□ -0.79
PTCH1-207ENST00000429896 ERG28Q9UKR5 140 aa10.13□□□□□ -0.79
PTCH1-207ENST00000429896 ANKHD1Q8IWZ3 2542 aaKnown RBP10.13□□□□□ -0.79
PTCH1-207ENST00000429896 PSMG3-AS1Q96PY0 264 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms