RNA–Protein interactions for RNA: ENST00000428313.5

C9orf3-206, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best)

Gene C9orf3, Length 2,288 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-206ENST00000428313 H3BRN7 92 aa12.57□□□□□ -0.4
C9orf3-206ENST00000428313 K7ESF4 209 aa12.57□□□□□ -0.4
C9orf3-206ENST00000428313 GAS8-AS1O95177 125 aa12.57□□□□□ -0.4
C9orf3-206ENST00000428313 HES7Q9BYE0 225 aa12.57□□□□□ -0.4
C9orf3-206ENST00000428313 MDFICQ9P1T7 246 aa12.57□□□□□ -0.4
C9orf3-206ENST00000428313 H3BVH4 76 aa12.56□□□□□ -0.4
C9orf3-206ENST00000428313 EGR2P11161 476 aaPredicted RBP12.56□□□□□ -0.4
C9orf3-206ENST00000428313 PDE6HQ13956 83 aa12.56□□□□□ -0.4
C9orf3-206ENST00000428313 NDUFA11Q86Y39 141 aa12.56□□□□□ -0.4
C9orf3-206ENST00000428313 OR10J6PQ8NGY7 276 aa12.56□□□□□ -0.4
C9orf3-206ENST00000428313 LAMA1P25391 3075 aa12.56□□□□□ -0.4
C9orf3-206ENST00000428313 TRAV8-2A0A0B4J237 113 aa12.55□□□□□ -0.4
C9orf3-206ENST00000428313 CCL4P13236 92 aa12.55□□□□□ -0.4
C9orf3-206ENST00000428313 CXCL12P48061 93 aa12.55□□□□□ -0.4
C9orf3-206ENST00000428313 SPRNQ5BIV9 151 aa12.55□□□□□ -0.4
C9orf3-206ENST00000428313 RAXQ9Y2V3 346 aa12.55□□□□□ -0.4
C9orf3-206ENST00000428313 IGFBP4P22692 258 aa12.55□□□□□ -0.4
C9orf3-206ENST00000428313 PRR14LQ5THK1 2151 aa12.55□□□□□ -0.4
C9orf3-206ENST00000428313 MRPS12O15235 138 aaKnown RBP12.54□□□□□ -0.4
C9orf3-206ENST00000428313 CRLF1O75462 422 aa12.54□□□□□ -0.4
C9orf3-206ENST00000428313 CECR9P0C854 216 aa12.54□□□□□ -0.4
C9orf3-206ENST00000428313 MRGPRG-AS1Q2M3A8 158 aa12.54□□□□□ -0.4
C9orf3-206ENST00000428313 AAMDCQ9H7C9 122 aa12.54□□□□□ -0.4
C9orf3-206ENST00000428313 M0R3E3 92 aa12.54□□□□□ -0.4
C9orf3-206ENST00000428313 SLC25A20O43772 301 aa12.54□□□□□ -0.4
C9orf3-206ENST00000428313 SRSF9Q13242 221 aaKnown RBP eCLIP12.54□□□□□ -0.4
C9orf3-206ENST00000428313 MEIG1Q5JSS6 88 aa12.54□□□□□ -0.4
C9orf3-206ENST00000428313 SFTA2Q6UW10 78 aa12.54□□□□□ -0.4
C9orf3-206ENST00000428313 GAFA1Q96PS6 74 aa12.54□□□□□ -0.4
C9orf3-206ENST00000428313 MSRB1Q9NZV6 116 aa12.54□□□□□ -0.4
C9orf3-206ENST00000428313 Q6ZT83 130 aa12.53□□□□□ -0.4
C9orf3-206ENST00000428313 RASL10AQ92737 203 aa12.53□□□□□ -0.4
C9orf3-206ENST00000428313 CACNA1EQ15878 2313 aa12.53□□□□□ -0.4
C9orf3-206ENST00000428313 WT1P19544 449 aaPredicted RBP12.53□□□□□ -0.4
C9orf3-206ENST00000428313 DUX4L9Q6RFH8 374 aaPredicted RBP12.53□□□□□ -0.4
C9orf3-206ENST00000428313 LINC01600Q96MT4 127 aa12.53□□□□□ -0.4
C9orf3-206ENST00000428313 PSMG3-AS1Q96PY0 264 aa12.53□□□□□ -0.4
C9orf3-206ENST00000428313 PRR25Q96S07 402 aa12.53□□□□□ -0.4
C9orf3-206ENST00000428313 ZNF576Q9H609 170 aa12.53□□□□□ -0.4
C9orf3-206ENST00000428313 IGHV3-21A0A0B4J1V1 117 aa12.52□□□□□ -0.41
C9orf3-206ENST00000428313 ZNF815PA8K554 130 aa12.52□□□□□ -0.41
C9orf3-206ENST00000428313 RPL27AP46776 148 aaKnown RBP12.52□□□□□ -0.41
C9orf3-206ENST00000428313 RAB1BQ9H0U4 201 aa12.52□□□□□ -0.41
C9orf3-206ENST00000428313 GATA1P15976 413 aaPredicted RBP12.51□□□□□ -0.41
C9orf3-206ENST00000428313 MRPL23Q16540 153 aaKnown RBP12.51□□□□□ -0.41
C9orf3-206ENST00000428313 C6orf15Q6UXA7 325 aaPredicted RBP12.51□□□□□ -0.41
C9orf3-206ENST00000428313 SCGB1D4Q6XE38 83 aa12.51□□□□□ -0.41
C9orf3-206ENST00000428313 ZNF575Q86XF7 245 aa12.51□□□□□ -0.41
C9orf3-206ENST00000428313 C10orf126Q8N4M7 172 aa12.51□□□□□ -0.41
C9orf3-206ENST00000428313 C1orf162Q8NEQ5 155 aaPredicted RBP12.51□□□□□ -0.41
C9orf3-206ENST00000428313 PRADC1Q9BSG0 188 aa12.51□□□□□ -0.41
C9orf3-206ENST00000428313 SPRY4Q9C004 299 aa12.51□□□□□ -0.41
C9orf3-206ENST00000428313 TPSG1Q9NRR2 321 aa12.51□□□□□ -0.41
C9orf3-206ENST00000428313 RAI1Q7Z5J4 1906 aaPredicted RBP12.51□□□□□ -0.41
C9orf3-206ENST00000428313 IGLV1-44P01699 117 aa12.51□□□□□ -0.41
C9orf3-206ENST00000428313 COX6B1P14854 86 aa12.51□□□□□ -0.41
C9orf3-206ENST00000428313 ID1P41134 155 aa12.51□□□□□ -0.41
C9orf3-206ENST00000428313 DTX2Q86UW9 622 aa12.51□□□□□ -0.41
C9orf3-206ENST00000428313 DKK4Q9UBT3 224 aa12.51□□□□□ -0.41
C9orf3-206ENST00000428313 NRACQ8N912 160 aa12.5□□□□□ -0.41
C9orf3-206ENST00000428313 ODF3Q96PU9 254 aa12.5□□□□□ -0.41
C9orf3-206ENST00000428313 IGKV1-17P01599 117 aa12.49□□□□□ -0.41
C9orf3-206ENST00000428313 SLC25A16P16260 332 aa12.49□□□□□ -0.41
C9orf3-206ENST00000428313 GATA4P43694 442 aa12.49□□□□□ -0.41
C9orf3-206ENST00000428313 FAM201AQ5SY85 155 aa12.49□□□□□ -0.41
C9orf3-206ENST00000428313 IL17RELQ6ZVW7 336 aa12.49□□□□□ -0.41
C9orf3-206ENST00000428313 PLEKHB2Q96CS7 222 aa12.49□□□□□ -0.41
C9orf3-206ENST00000428313 RNF7Q9UBF6 113 aa12.49□□□□□ -0.41
C9orf3-206ENST00000428313 HLA-DMBP28068 263 aa12.49□□□□□ -0.41
C9orf3-206ENST00000428313 RPL13AP40429 203 aaKnown RBP12.49□□□□□ -0.41
C9orf3-206ENST00000428313 EFNA4P52798 201 aa12.49□□□□□ -0.41
C9orf3-206ENST00000428313 TDHQ8IZJ6 230 aa12.49□□□□□ -0.41
C9orf3-206ENST00000428313 NEXN-AS1Q8NBZ9 246 aa12.49□□□□□ -0.41
C9orf3-206ENST00000428313 PPDPFQ9H3Y8 114 aa12.49□□□□□ -0.41
C9orf3-206ENST00000428313 ONECUT1Q9UBC0 465 aa12.49□□□□□ -0.41
C9orf3-206ENST00000428313 COL6A3P12111 3177 aa12.49□□□□□ -0.41
C9orf3-206ENST00000428313 MYO15AQ9UKN7 3530 aa12.49□□□□□ -0.41
C9orf3-206ENST00000428313 SVILO95425 2214 aa12.48□□□□□ -0.41
C9orf3-206ENST00000428313 SPTBN5Q9NRC6 3674 aaKnown RBP12.48□□□□□ -0.41
C9orf3-206ENST00000428313 TRAV8-4A0A0B4J246 113 aa12.48□□□□□ -0.41
C9orf3-206ENST00000428313 I3L2K1 104 aa12.48□□□□□ -0.41
C9orf3-206ENST00000428313 ZNF80P51504 273 aaPredicted RBP12.48□□□□□ -0.41
C9orf3-206ENST00000428313 PMS2CLQ68D20 193 aa12.48□□□□□ -0.41
C9orf3-206ENST00000428313 Q8N1Y9 231 aa12.48□□□□□ -0.41
C9orf3-206ENST00000428313 LINC00311Q8N616 119 aa12.48□□□□□ -0.41
C9orf3-206ENST00000428313 C8orf31Q8N9H6 132 aa12.48□□□□□ -0.41
C9orf3-206ENST00000428313 C15orf53Q8NAA6 179 aa12.48□□□□□ -0.41
C9orf3-206ENST00000428313 NRGNQ92686 78 aa12.48□□□□□ -0.41
C9orf3-206ENST00000428313 C9JAW5 83 aa12.48□□□□□ -0.41
C9orf3-206ENST00000428313 Q6ZQT7 251 aa12.48□□□□□ -0.41
C9orf3-206ENST00000428313 CFC1BP0CG36 223 aa12.47□□□□□ -0.41
C9orf3-206ENST00000428313 CFC1P0CG37 223 aa12.47□□□□□ -0.41
C9orf3-206ENST00000428313 PRB4P10163 310 aaPredicted RBP12.47□□□□□ -0.41
C9orf3-206ENST00000428313 LY6DQ14210 128 aa12.47□□□□□ -0.41
C9orf3-206ENST00000428313 FAM216BQ8N7L0 139 aa12.47□□□□□ -0.41
C9orf3-206ENST00000428313 CCL13Q99616 98 aa12.47□□□□□ -0.41
C9orf3-206ENST00000428313 PRO1854Q9UHT4 67 aa12.47□□□□□ -0.41
C9orf3-206ENST00000428313 FAM186AA6NE01 2351 aa12.47□□□□□ -0.41
C9orf3-206ENST00000428313 IGHV1-18A0A0C4DH31 117 aa12.46□□□□□ -0.41
C9orf3-206ENST00000428313 ZNF672Q499Z4 452 aaPredicted RBP12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms