RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 AAED1Q7RTV5 226 aa1.84□□□□□ -2.11
USP40-204ENST00000427947 LRRC28Q86X40 367 aaPredicted RBP1.84□□□□□ -2.11
USP40-204ENST00000427947 C10orf126Q8N4M7 172 aa1.84□□□□□ -2.11
USP40-204ENST00000427947 OR4E2Q8NGC2 313 aa1.84□□□□□ -2.11
USP40-204ENST00000427947 OR9Q1Q8NGQ5 310 aa1.84□□□□□ -2.11
USP40-204ENST00000427947 THEM6Q8WUY1 208 aa1.84□□□□□ -2.11
USP40-204ENST00000427947 ZCCHC13Q8WW36 166 aaKnown RBP1.84□□□□□ -2.11
USP40-204ENST00000427947 C11orf40Q8WZ69 217 aa1.84□□□□□ -2.11
USP40-204ENST00000427947 ADAT3Q96EY9 351 aaPredicted RBP1.84□□□□□ -2.11
USP40-204ENST00000427947 HSPB9Q9BQS6 159 aa1.84□□□□□ -2.11
USP40-204ENST00000427947 KRTAP2-4Q9BYR9 128 aa1.84□□□□□ -2.11
USP40-204ENST00000427947 C6orf62Q9GZU0 229 aaPredicted RBP1.84□□□□□ -2.11
USP40-204ENST00000427947 CACYBPQ9HB71 228 aaKnown RBP1.84□□□□□ -2.11
USP40-204ENST00000427947 TMEM138Q9NPI0 162 aa1.84□□□□□ -2.11
USP40-204ENST00000427947 NDUFB11Q9NX14 153 aa1.84□□□□□ -2.11
USP40-204ENST00000427947 TAS2R7Q9NYW3 318 aa1.84□□□□□ -2.11
USP40-204ENST00000427947 LAMTOR2Q9Y2Q5 125 aa1.84□□□□□ -2.11
USP40-204ENST00000427947 TACC2O95359 2948 aa1.84□□□□□ -2.11
USP40-204ENST00000427947 COL4A1P02462 1669 aa1.83□□□□□ -2.12
USP40-204ENST00000427947 TNS3Q68CZ2 1445 aa1.83□□□□□ -2.12
USP40-204ENST00000427947 TJP1Q07157 1748 aa1.83□□□□□ -2.12
USP40-204ENST00000427947 IFT172Q9UG01 1749 aa1.83□□□□□ -2.12
USP40-204ENST00000427947 ATG2BQ96BY7 2078 aa1.83□□□□□ -2.12
USP40-204ENST00000427947 ZSWIM8A7E2V4 1837 aa1.83□□□□□ -2.12
USP40-204ENST00000427947 IGLV10-54A0A075B6I4 117 aa1.83□□□□□ -2.12
USP40-204ENST00000427947 IGHV1-18A0A0C4DH31 117 aa1.83□□□□□ -2.12
USP40-204ENST00000427947 A0A0D9SEW6 157 aa1.83□□□□□ -2.12
USP40-204ENST00000427947 A0A0D9SG52 128 aa1.83□□□□□ -2.12
USP40-204ENST00000427947 TRBV10-2A0A0K0K1G8 114 aa1.83□□□□□ -2.12
USP40-204ENST00000427947 TMEM212A6NML5 194 aa1.83□□□□□ -2.12
USP40-204ENST00000427947 HMSDA8MTL9 139 aa1.83□□□□□ -2.12
USP40-204ENST00000427947 ODF3BA8MYP8 253 aa1.83□□□□□ -2.12
USP40-204ENST00000427947 M0R378 163 aa1.83□□□□□ -2.12
USP40-204ENST00000427947 NDUFB3O43676 98 aa1.83□□□□□ -2.12
USP40-204ENST00000427947 TCL1BO95988 128 aa1.83□□□□□ -2.12
USP40-204ENST00000427947 FAM107AO95990 144 aa1.83□□□□□ -2.12
USP40-204ENST00000427947 CSRP1P21291 193 aaKnown RBP1.83□□□□□ -2.12
USP40-204ENST00000427947 S100A11P31949 105 aa1.83□□□□□ -2.12
USP40-204ENST00000427947 TMBIM6P55061 237 aa1.83□□□□□ -2.12
USP40-204ENST00000427947 ZNF90Q03938 601 aa1.83□□□□□ -2.12
USP40-204ENST00000427947 MSMO1Q15800 293 aa1.83□□□□□ -2.12
USP40-204ENST00000427947 NDUFA5Q16718 116 aa1.83□□□□□ -2.12
USP40-204ENST00000427947 RTL8BQ17RB0 113 aa1.83□□□□□ -2.12
USP40-204ENST00000427947 KRTAP6-3Q3LI67 103 aa1.83□□□□□ -2.12
USP40-204ENST00000427947 HRCT1Q6UXD1 115 aa1.83□□□□□ -2.12
USP40-204ENST00000427947 SMIM5Q71RC9 77 aa1.83□□□□□ -2.12
USP40-204ENST00000427947 DHFR2Q86XF0 187 aa1.83□□□□□ -2.12
USP40-204ENST00000427947 NUP35Q8NFH5 326 aa1.83□□□□□ -2.12
USP40-204ENST00000427947 PFN4Q8NHR9 129 aa1.83□□□□□ -2.12
USP40-204ENST00000427947 CANT1Q8WVQ1 401 aa1.83□□□□□ -2.12
USP40-204ENST00000427947 BORCS5Q969J3 196 aa1.83□□□□□ -2.12
USP40-204ENST00000427947 ISOC1Q96CN7 298 aa1.83□□□□□ -2.12
USP40-204ENST00000427947 ZNF714Q96N38 554 aa1.83□□□□□ -2.12
USP40-204ENST00000427947 YPEL2Q96QA6 119 aa1.83□□□□□ -2.12
USP40-204ENST00000427947 RTL8AQ9BWD3 113 aa1.83□□□□□ -2.12
USP40-204ENST00000427947 MRPL32Q9BYC8 188 aaKnown RBP1.83□□□□□ -2.12
USP40-204ENST00000427947 RNF122Q9H9V4 155 aa1.83□□□□□ -2.12
USP40-204ENST00000427947 SPANXA1Q9NS26 97 aa1.83□□□□□ -2.12
USP40-204ENST00000427947 EPDR1Q9UM22 224 aa1.83□□□□□ -2.12
USP40-204ENST00000427947 NUBP2Q9Y5Y2 271 aa1.83□□□□□ -2.12
USP40-204ENST00000427947 LCTP09848 1927 aa1.83□□□□□ -2.12
USP40-204ENST00000427947 MAST2Q6P0Q8 1798 aa1.82□□□□□ -2.12
USP40-204ENST00000427947 ADGRB1O14514 1584 aa1.82□□□□□ -2.12
USP40-204ENST00000427947 ABCA4P78363 2273 aa1.82□□□□□ -2.12
USP40-204ENST00000427947 CDC42BPGQ6DT37 1551 aa1.82□□□□□ -2.12
USP40-204ENST00000427947 IGHV3-64A0A075B6Q5 118 aa1.82□□□□□ -2.12
USP40-204ENST00000427947 TRGV10A0A0A0MS01 117 aa1.82□□□□□ -2.12
USP40-204ENST00000427947 SDHAF1A6NFY7 115 aa1.82□□□□□ -2.12
USP40-204ENST00000427947 TLCD2A6NGC4 264 aa1.82□□□□□ -2.12
USP40-204ENST00000427947 J3KT08 172 aa1.82□□□□□ -2.12
USP40-204ENST00000427947 J3QQQ9 107 aa1.82□□□□□ -2.12
USP40-204ENST00000427947 HMGN1P05114 100 aa1.82□□□□□ -2.12
USP40-204ENST00000427947 HTR1AP08908 422 aa1.82□□□□□ -2.12
USP40-204ENST00000427947 CXCL1P09341 107 aa1.82□□□□□ -2.12
USP40-204ENST00000427947 BCL2P10415 239 aa1.82□□□□□ -2.12
USP40-204ENST00000427947 PEBP1P30086 187 aaKnown RBP1.82□□□□□ -2.12
USP40-204ENST00000427947 DYNLT3P51808 116 aa1.82□□□□□ -2.12
USP40-204ENST00000427947 AQP4P55087 323 aa1.82□□□□□ -2.12
USP40-204ENST00000427947 RPL26P61254 145 aaKnown RBP1.82□□□□□ -2.12
USP40-204ENST00000427947 LCN15Q6UWW0 184 aa1.82□□□□□ -2.12
USP40-204ENST00000427947 SOSTDC1Q6X4U4 206 aa1.82□□□□□ -2.12
USP40-204ENST00000427947 PDZD9Q8IXQ8 264 aa1.82□□□□□ -2.12
USP40-204ENST00000427947 DYNAPQ8N1N2 210 aa1.82□□□□□ -2.12
USP40-204ENST00000427947 AQP3Q92482 292 aa1.82□□□□□ -2.12
USP40-204ENST00000427947 ZC2HC1AQ96GY0 325 aa1.82□□□□□ -2.12
USP40-204ENST00000427947 PRADC1Q9BSG0 188 aa1.82□□□□□ -2.12
USP40-204ENST00000427947 ADAT1Q9BUB4 502 aaKnown RBP1.82□□□□□ -2.12
USP40-204ENST00000427947 ZNF471Q9BX82 626 aaPredicted RBP1.82□□□□□ -2.12
USP40-204ENST00000427947 NPCDR1Q9BY65 106 aa1.82□□□□□ -2.12
USP40-204ENST00000427947 YIPF3Q9GZM5 350 aa1.82□□□□□ -2.12
USP40-204ENST00000427947 TMEM133Q9H2Q1 129 aa1.82□□□□□ -2.12
USP40-204ENST00000427947 RPL26L1Q9UNX3 145 aaKnown RBP1.82□□□□□ -2.12
USP40-204ENST00000427947 BAIAP2Q9UQB8 552 aa1.82□□□□□ -2.12
USP40-204ENST00000427947 DYNC2H1Q8NCM8 4307 aaKnown RBP1.82□□□□□ -2.12
USP40-204ENST00000427947 RGPD8O14715 1765 aaPredicted RBP1.82□□□□□ -2.12
USP40-204ENST00000427947 COL11A1P12107 1806 aaPredicted RBP1.82□□□□□ -2.12
USP40-204ENST00000427947 PAPPAQ13219 1627 aa1.81□□□□□ -2.12
USP40-204ENST00000427947 FMN2Q9NZ56 1722 aa1.81□□□□□ -2.12
USP40-204ENST00000427947 PRRC2BQ5JSZ5 2229 aaKnown RBP1.81□□□□□ -2.12
USP40-204ENST00000427947 PPLO60437 1756 aa1.81□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms