RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 FAM90A12PA8MX19 464 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 UPK2O00526 184 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 APCSP02743 223 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 RAB4BP61018 213 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 EMX2Q04743 252 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 UTS2BQ765I0 119 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 NAA40Q86UY6 237 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 SUMF2Q8NBJ7 301 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 SIGMAR1Q99720 223 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 POLR2J2Q9GZM3 115 aaKnown RBP1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 IGLV9-49A0A0B4J1Y8 123 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 TRAV21A0A0B4J279 112 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 DHRS12A0PJE2 317 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 PANO1I0J062 215 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 PDCD6O75340 191 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 IGLV1-40P01703 118 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 CRYBA2P53672 197 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 POU2AF1Q16633 256 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 SP6Q3SY56 376 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 RPL7L1Q6DKI1 246 aaKnown RBP1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 Q6ZSR3 168 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 ZNF414Q96IQ9 312 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 RAB6CQ9H0N0 254 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 CCDC59Q9P031 241 aaKnown RBP1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 LAMTOR3Q9UHA4 124 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 GBF1Q92538 1859 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 BAZ2AQ9UIF9 1905 aaKnown RBP1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 PLXNB3Q9ULL4 1909 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 TRAV1-2A0A0B4J238 106 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 USP17L23D6RBM5 183 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 FNDC10F2Z333 226 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 HLA-DOBP13765 273 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 JUNBP17275 347 aaPredicted RBP1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 FUSP35637 526 aaKnown RBP eCLIP1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 IGLV3-21P80748 117 aaPredicted RBP1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 ZNF85Q03923 595 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 ERCC8Q13216 396 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 CIRBPQ14011 172 aaKnown RBP1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 H1FOOQ8IZA3 346 aaPredicted RBP1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 C5orf17Q8NAS9 161 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 VN1R17PQ8TDU5 208 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 TMEM190Q8WZ59 177 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 SCGB3A1Q96QR1 104 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 PPDPFQ9H3Y8 114 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 DKK2Q9UBU2 259 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 STRAPQ9Y3F4 350 aaKnown RBP1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 KIF25-AS1Q9Y6Z4 181 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 RNF222A6NCQ9 220 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 C17orf51A8MQB3 221 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 SLPIP03973 132 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 C4BPBP20851 252 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 S100A5P33763 92 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 PRSS3P35030 304 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 ERFP50548 548 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 ZNF138P52744 262 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 HBG1P69891 147 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 HBG2P69892 147 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 PNRC1Q12796 327 aaPredicted RBP1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 TRAM1Q15629 374 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 VAMP3Q15836 100 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 ARRDC1Q8N5I2 433 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 GDPD1Q8N9F7 314 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 OR10G2Q8NGC3 310 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 SMCO4Q9NRQ5 59 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 NAV1Q8NEY1 1877 aa1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 TMSB15BA0A087X1C1 80 aa1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 C20orf202A1L168 122 aa1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 CCDC182A6NF36 153 aa1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 HOXB6P17509 224 aaKnown RBP1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 CRYBA4P53673 196 aa1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 C12orf74Q32Q52 190 aa1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 Q6ZR03 302 aa1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 LINC01551Q86U37 167 aa1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 ZNF679Q8IYX0 411 aa1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 ACBD7Q8N6N7 88 aa1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 TVP23CQ96ET8 276 aa1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 COQ2Q96H96 371 aa1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 TMEM222Q9H0R3 208 aa1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 GABARAPL1Q9H0R8 117 aa1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 Q9H521 79 aa1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 TPRKBQ9Y3C4 175 aa1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 PLXNA4Q9HCM2 1894 aa1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 IGLV5-37A0A075B6J1 123 aa1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 PQLC2LA1A4F0 135 aa1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 A8MWL6 223 aa1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 OIP5O43482 229 aa1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 ZNF73O43830 326 aaPredicted RBP1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 TCRAP04437 139 aa1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 MGST1P10620 155 aaKnown RBP1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 QRFPP83859 136 aa1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 PCLAFQ15004 111 aa1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 ZFP1Q6P2D0 407 aa1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 GPX8Q8TED1 209 aa1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 C10orf82Q8WW14 230 aa1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 OLFM3Q96PB7 478 aa1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 SCP2D1Q9UJQ7 156 aa1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 ZNF222Q9UK12 451 aa1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 MYH4Q9Y623 1939 aa1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 MTCL1Q9Y4B5 1905 aaKnown RBP1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 TFF1P04155 84 aa1.93□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms