RNA–Protein interactions for RNA: ENST00000425537.1

HMGB4-201, Transcript of high mobility group box 4, humanhuman

TSL 1 (best)

Gene HMGB4, Length 630 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-201ENST00000425537 RPL11P62913 178 aaKnown RBP7.23□□□□□ -1.25
HMGB4-201ENST00000425537 UNQ9165/PRO28630Q6UXU0 137 aa7.23□□□□□ -1.25
HMGB4-201ENST00000425537 KLHDC1Q8N7A1 406 aa7.23□□□□□ -1.25
HMGB4-201ENST00000425537 OR2D3Q8NGH3 330 aa7.23□□□□□ -1.25
HMGB4-201ENST00000425537 OR10J6PQ8NGY7 276 aa7.23□□□□□ -1.25
HMGB4-201ENST00000425537 PRR25Q96S07 402 aa7.23□□□□□ -1.25
HMGB4-201ENST00000425537 ASCL2Q99929 193 aa7.23□□□□□ -1.25
HMGB4-201ENST00000425537 PPP1R14DQ9NXH3 145 aa7.23□□□□□ -1.25
HMGB4-201ENST00000425537 IGHV3OR16-13A0A075B7E8 117 aa7.22□□□□□ -1.25
HMGB4-201ENST00000425537 IGKV2-40A0A087WW87 121 aaPredicted RBP7.22□□□□□ -1.25
HMGB4-201ENST00000425537 IGHV3-49A0A0A0MS15 119 aa7.22□□□□□ -1.25
HMGB4-201ENST00000425537 IGHV3-74A0A0B4J1X5 117 aa7.22□□□□□ -1.25
HMGB4-201ENST00000425537 HIGD1CA8MV81 97 aa7.22□□□□□ -1.25
HMGB4-201ENST00000425537 SNURFLB1AK76 121 aa7.22□□□□□ -1.25
HMGB4-201ENST00000425537 IGKV2D-40P01614 121 aaPredicted RBP7.22□□□□□ -1.25
HMGB4-201ENST00000425537 SRD5A1P18405 259 aa7.22□□□□□ -1.25
HMGB4-201ENST00000425537 ZNF138P52744 262 aa7.22□□□□□ -1.25
HMGB4-201ENST00000425537 TCL1AP56279 114 aa7.22□□□□□ -1.25
HMGB4-201ENST00000425537 RAB4BP61018 213 aa7.22□□□□□ -1.25
HMGB4-201ENST00000425537 LCNL1Q6ZST4 164 aa7.22□□□□□ -1.25
HMGB4-201ENST00000425537 ZNF738Q8NE65 137 aa7.22□□□□□ -1.25
HMGB4-201ENST00000425537 C4orf3Q8WVX3 66 aa7.22□□□□□ -1.25
HMGB4-201ENST00000425537 DPF1Q92782 380 aa7.22□□□□□ -1.25
HMGB4-201ENST00000425537 ZC2HC1AQ96GY0 325 aa7.22□□□□□ -1.25
HMGB4-201ENST00000425537 LINC00477Q96M19 166 aa7.22□□□□□ -1.25
HMGB4-201ENST00000425537 NEU1Q99519 415 aa7.22□□□□□ -1.25
HMGB4-201ENST00000425537 MRPL18Q9H0U6 180 aaKnown RBP7.22□□□□□ -1.25
HMGB4-201ENST00000425537 PEMTQ9UBM1 199 aa7.22□□□□□ -1.25
HMGB4-201ENST00000425537 TRBV7-9A0A0J9YWB2 115 aa7.21□□□□□ -1.26
HMGB4-201ENST00000425537 TMEM189A5PLL7 270 aa7.21□□□□□ -1.26
HMGB4-201ENST00000425537 FAM181BA6NEQ2 426 aa7.21□□□□□ -1.26
HMGB4-201ENST00000425537 FABP5P3A8MUU1 101 aa7.21□□□□□ -1.26
HMGB4-201ENST00000425537 PHOX2AO14813 284 aa7.21□□□□□ -1.26
HMGB4-201ENST00000425537 RNASE1P07998 156 aaKnown RBP7.21□□□□□ -1.26
HMGB4-201ENST00000425537 PAFAH1B2P68402 229 aa7.21□□□□□ -1.26
HMGB4-201ENST00000425537 HBBP68871 147 aa7.21□□□□□ -1.26
HMGB4-201ENST00000425537 HIST1H1AQ02539 215 aaPredicted RBP7.21□□□□□ -1.26
HMGB4-201ENST00000425537 RIGQ13278 110 aa7.21□□□□□ -1.26
HMGB4-201ENST00000425537 COA6Q5JTJ3 125 aaKnown RBP7.21□□□□□ -1.26
HMGB4-201ENST00000425537 C9orf47Q6ZRZ4 202 aa7.21□□□□□ -1.26
HMGB4-201ENST00000425537 TCF24Q7RTU0 167 aa7.21□□□□□ -1.26
HMGB4-201ENST00000425537 NUP35Q8NFH5 326 aa7.21□□□□□ -1.26
HMGB4-201ENST00000425537 FN1P02751 2386 aaKnown RBP7.2□□□□□ -1.26
HMGB4-201ENST00000425537 TLN2Q9Y4G6 2542 aa7.2□□□□□ -1.26
HMGB4-201ENST00000425537 TRAV8-2A0A0B4J237 113 aa7.2□□□□□ -1.26
HMGB4-201ENST00000425537 LINC01619G3V211 115 aa7.2□□□□□ -1.26
HMGB4-201ENST00000425537 APCSP02743 223 aa7.2□□□□□ -1.26
HMGB4-201ENST00000425537 FOXA3P55318 350 aaPredicted RBP7.2□□□□□ -1.26
HMGB4-201ENST00000425537 TM4SF20Q53R12 229 aa7.2□□□□□ -1.26
HMGB4-201ENST00000425537 MRPL54Q6P161 138 aaKnown RBP7.2□□□□□ -1.26
HMGB4-201ENST00000425537 TMEM136Q6ZRR5 245 aa7.2□□□□□ -1.26
HMGB4-201ENST00000425537 DUX5Q96PT3 197 aa7.2□□□□□ -1.26
HMGB4-201ENST00000425537 VGLL1Q99990 258 aa7.2□□□□□ -1.26
HMGB4-201ENST00000425537 C16orf95Q9H693 158 aa7.2□□□□□ -1.26
HMGB4-201ENST00000425537 SONP18583 2426 aaKnown RBP7.19□□□□□ -1.26
HMGB4-201ENST00000425537 A0A1B0GUT8 65 aa7.19□□□□□ -1.26
HMGB4-201ENST00000425537 ZNF705FA8MVS1 300 aaPredicted RBP7.19□□□□□ -1.26
HMGB4-201ENST00000425537 SH2D1AO60880 128 aa7.19□□□□□ -1.26
HMGB4-201ENST00000425537 CRLF1O75462 422 aa7.19□□□□□ -1.26
HMGB4-201ENST00000425537 CA1P00915 261 aaPredicted RBP7.19□□□□□ -1.26
HMGB4-201ENST00000425537 CRISP2P16562 243 aa7.19□□□□□ -1.26
HMGB4-201ENST00000425537 CBLN1P23435 193 aa7.19□□□□□ -1.26
HMGB4-201ENST00000425537 HOXD3P31249 432 aaPredicted RBP7.19□□□□□ -1.26
HMGB4-201ENST00000425537 HILS1P60008 231 aa7.19□□□□□ -1.26
HMGB4-201ENST00000425537 SNRPD3P62318 126 aaKnown RBP7.19□□□□□ -1.26
HMGB4-201ENST00000425537 KHDC1LQ5JSQ8 128 aa7.19□□□□□ -1.26
HMGB4-201ENST00000425537 LINC00322Q6ZN03 302 aaPredicted RBP7.19□□□□□ -1.26
HMGB4-201ENST00000425537 Q6ZSV7 163 aa7.19□□□□□ -1.26
HMGB4-201ENST00000425537 RNF182Q8N6D2 247 aa7.19□□□□□ -1.26
HMGB4-201ENST00000425537 IGHV4OR15-8A0A075B7B6 117 aa7.18□□□□□ -1.26
HMGB4-201ENST00000425537 A0A087WW49 117 aa7.18□□□□□ -1.26
HMGB4-201ENST00000425537 TMEM213A2RRL7 107 aa7.18□□□□□ -1.26
HMGB4-201ENST00000425537 SOCS3O14543 225 aa7.18□□□□□ -1.26
HMGB4-201ENST00000425537 SPINK4O60575 86 aa7.18□□□□□ -1.26
HMGB4-201ENST00000425537 SMIM6P0DI80 62 aa7.18□□□□□ -1.26
HMGB4-201ENST00000425537 HLA-DMBP28068 263 aa7.18□□□□□ -1.26
HMGB4-201ENST00000425537 SYNJ2BPP57105 145 aa7.18□□□□□ -1.26
HMGB4-201ENST00000425537 KLF5Q13887 457 aaPredicted RBP7.18□□□□□ -1.26
HMGB4-201ENST00000425537 OR10J3Q5JRS4 329 aa7.18□□□□□ -1.26
HMGB4-201ENST00000425537 IGFL4Q6B9Z1 124 aa7.18□□□□□ -1.26
HMGB4-201ENST00000425537 C10orf99Q6UWK7 81 aa7.18□□□□□ -1.26
HMGB4-201ENST00000425537 HIST3H2BBQ8N257 126 aa7.18□□□□□ -1.26
HMGB4-201ENST00000425537 OR1N2Q8NGR9 330 aa7.18□□□□□ -1.26
HMGB4-201ENST00000425537 TMEM18Q96B42 140 aa7.18□□□□□ -1.26
HMGB4-201ENST00000425537 PGLYRP4Q96LB8 373 aa7.18□□□□□ -1.26
HMGB4-201ENST00000425537 C8orf49Q96NF6 230 aa7.18□□□□□ -1.26
HMGB4-201ENST00000425537 AGPAT4-IT1Q9H0P7 198 aa7.18□□□□□ -1.26
HMGB4-201ENST00000425537 TRAV2A0A0B4J234 112 aa7.17□□□□□ -1.26
HMGB4-201ENST00000425537 A0A1B0GXF2 115 aa7.17□□□□□ -1.26
HMGB4-201ENST00000425537 F2Z2F3 143 aa7.17□□□□□ -1.26
HMGB4-201ENST00000425537 NDUFA7O95182 113 aa7.17□□□□□ -1.26
HMGB4-201ENST00000425537 ORM1P02763 201 aa7.17□□□□□ -1.26
HMGB4-201ENST00000425537 Q0VG73 95 aa7.17□□□□□ -1.26
HMGB4-201ENST00000425537 ERCC8Q13216 396 aa7.17□□□□□ -1.26
HMGB4-201ENST00000425537 PRIMA1Q86XR5 153 aa7.17□□□□□ -1.26
HMGB4-201ENST00000425537 BAGE3Q86Y29 109 aa7.17□□□□□ -1.26
HMGB4-201ENST00000425537 KLHL30-AS1Q8NEE0 82 aa7.17□□□□□ -1.26
HMGB4-201ENST00000425537 Q8TAT8 98 aa7.17□□□□□ -1.26
HMGB4-201ENST00000425537 ANK3Q12955 4377 aaKnown RBP7.16□□□□□ -1.26
HMGB4-201ENST00000425537 HIVEP2P31629 2446 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms