RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 IGKV1-12A0A0C4DH73 117 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 IGKV1D-12P01611 117 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 SMCPP49901 116 aaPredicted RBP2.73□□□□□ -1.97
SYNE1-212ENST00000423061 MLANAQ16655 118 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 C11orf52Q96A22 123 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 CCL1P22362 96 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 PRO0628Q9UI54 55 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 SPRY3O43610 288 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 CD164L2Q6UWJ8 174 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 APRG1Q8IVJ8 170 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 ZNF625Q96I27 306 aaPredicted RBP2.73□□□□□ -1.97
SYNE1-212ENST00000423061 MRPL20Q9BYC9 149 aaKnown RBP2.73□□□□□ -1.97
SYNE1-212ENST00000423061 PRR19A6NJB7 356 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 UQCRQO14949 82 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 DTX1Q86Y01 620 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 ODF3Q96PU9 254 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 DEFB127Q9H1M4 99 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 WNT9BO14905 357 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 TNCP24821 2201 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 TRGV11A0A075B6L2 103 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 SRD5A1P18405 259 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 LGALS9BQ3B8N2 356 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 LGALS9CQ6DKI2 356 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 PROK2Q9HC23 129 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 IGHV3-64A0A075B6Q5 118 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 IGHV3OR15-7A0A075B7D8 119 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 ARMS2P0C7Q2 107 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 TREML4Q6UXN2 200 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 LGALS9O00182 355 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 LAGE3Q14657 143 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 C8orf31Q8N9H6 132 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 NAV3Q8IVL0 2385 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 ZNF714Q96N38 554 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 TFF1P04155 84 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 GPR179Q6PRD1 2367 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 A0A0B4J2C4 111 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 FAM208BQ5VWN6 2430 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 DNAL4O96015 105 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 RHOHQ15669 191 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 RPL39P5Q59GN2 51 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 KLHL30-AS1Q8NEE0 82 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 CACNA1AO00555 2505 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 INS-IGF2F8WCM5 200 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 CLEC2BQ92478 149 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 BDP1A6H8Y1 2624 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 SPRY2O43597 315 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 C16orf92Q96LL3 132 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 TRAV21A0A0B4J279 112 aa2.72□□□□□ -1.97
SYNE1-212ENST00000423061 PAPPA-AS1Q5QFB9 102 aa2.72□□□□□ -1.97
SYNE1-212ENST00000423061 SPANXN1Q5VSR9 72 aa2.72□□□□□ -1.97
SYNE1-212ENST00000423061 NACAE9PAV3 2078 aa2.72□□□□□ -1.97
SYNE1-212ENST00000423061 FAM90A9PA6NNJ1 464 aa2.72□□□□□ -1.97
SYNE1-212ENST00000423061 GATA4P43694 442 aa2.72□□□□□ -1.97
SYNE1-212ENST00000423061 FHL3Q13643 280 aa2.72□□□□□ -1.97
SYNE1-212ENST00000423061 Q6ZT83 130 aa2.72□□□□□ -1.97
SYNE1-212ENST00000423061 FAM19A4Q96LR4 140 aa2.72□□□□□ -1.97
SYNE1-212ENST00000423061 SYNGR3O43761 229 aa2.72□□□□□ -1.97
SYNE1-212ENST00000423061 C1orf159Q96HA4 380 aa2.72□□□□□ -1.97
SYNE1-212ENST00000423061 M0R2P5 195 aa2.72□□□□□ -1.97
SYNE1-212ENST00000423061 SLC25A48Q6ZT89 311 aaKnown RBP2.72□□□□□ -1.97
SYNE1-212ENST00000423061 PYGO1Q9Y3Y4 419 aa2.72□□□□□ -1.97
SYNE1-212ENST00000423061 TMEM89A2RUT3 159 aa2.72□□□□□ -1.97
SYNE1-212ENST00000423061 DPH3Q96FX2 82 aa2.72□□□□□ -1.97
SYNE1-212ENST00000423061 SIT1Q9Y3P8 196 aa2.72□□□□□ -1.97
SYNE1-212ENST00000423061 LINC01620Q4KN68 170 aa2.72□□□□□ -1.97
SYNE1-212ENST00000423061 RASL10AQ92737 203 aa2.72□□□□□ -1.97
SYNE1-212ENST00000423061 SS18L1O75177 396 aaPredicted RBP2.72□□□□□ -1.97
SYNE1-212ENST00000423061 COX6A1P12074 109 aa2.72□□□□□ -1.97
SYNE1-212ENST00000423061 RPL27AP46776 148 aaKnown RBP2.72□□□□□ -1.97
SYNE1-212ENST00000423061 PHLDA1Q8WV24 401 aaPredicted RBP2.72□□□□□ -1.97
SYNE1-212ENST00000423061 K7EM74 188 aa2.72□□□□□ -1.97
SYNE1-212ENST00000423061 LINC01559Q495D7 138 aa2.72□□□□□ -1.97
SYNE1-212ENST00000423061 FAM231DQ6ZW35 169 aa2.72□□□□□ -1.97
SYNE1-212ENST00000423061 LINC00526Q96FQ7 95 aa2.72□□□□□ -1.97
SYNE1-212ENST00000423061 IGKV2-40A0A087WW87 121 aaPredicted RBP2.72□□□□□ -1.97
SYNE1-212ENST00000423061 IGKV3D-11A0A0A0MRZ8 115 aa2.72□□□□□ -1.97
SYNE1-212ENST00000423061 PLXNB1O43157 2135 aa2.72□□□□□ -1.97
SYNE1-212ENST00000423061 IGKV2D-40P01614 121 aaPredicted RBP2.72□□□□□ -1.97
SYNE1-212ENST00000423061 Q9H3A6 140 aa2.72□□□□□ -1.97
SYNE1-212ENST00000423061 THSD7BQ9C0I4 1608 aa2.72□□□□□ -1.97
SYNE1-212ENST00000423061 SHISA9B4DS77 424 aa2.72□□□□□ -1.97
SYNE1-212ENST00000423061 C20orf204Q6ZNR8 217 aa2.72□□□□□ -1.97
SYNE1-212ENST00000423061 ZNF295-AS1Q8N0V1 137 aa2.72□□□□□ -1.97
SYNE1-212ENST00000423061 METTL26Q96S19 204 aa2.72□□□□□ -1.97
SYNE1-212ENST00000423061 ZNF576Q9H609 170 aa2.72□□□□□ -1.97
SYNE1-212ENST00000423061 C16orf97H3BN30 126 aa2.72□□□□□ -1.97
SYNE1-212ENST00000423061 SH2D1AO60880 128 aa2.72□□□□□ -1.97
SYNE1-212ENST00000423061 RNF7Q9UBF6 113 aa2.72□□□□□ -1.97
SYNE1-212ENST00000423061 LY6DQ14210 128 aa2.71□□□□□ -1.97
SYNE1-212ENST00000423061 RNF182Q8N6D2 247 aa2.71□□□□□ -1.97
SYNE1-212ENST00000423061 C20orf173Q96LM9 149 aa2.71□□□□□ -1.97
SYNE1-212ENST00000423061 C12orf77C9JDV5 145 aa2.71□□□□□ -1.97
SYNE1-212ENST00000423061 CCL21O00585 134 aa2.71□□□□□ -1.97
SYNE1-212ENST00000423061 TCRAP04437 139 aa2.71□□□□□ -1.97
SYNE1-212ENST00000423061 ORMDL2Q53FV1 153 aa2.71□□□□□ -1.98
SYNE1-212ENST00000423061 IGKV3-11P04433 115 aa2.71□□□□□ -1.98
SYNE1-212ENST00000423061 CRYGBP07316 175 aa2.71□□□□□ -1.98
SYNE1-212ENST00000423061 CFAP126Q5VTH2 177 aa2.71□□□□□ -1.98
SYNE1-212ENST00000423061 SDIM1Q6ZPB5 146 aa2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 423.1 ms