RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 KLF12Q9Y4X4 402 aa4.52□□□□□ -1.69
HMGB3-202ENST00000419110 SMAD5-AS1Q9Y6J3 95 aa4.52□□□□□ -1.69
HMGB3-202ENST00000419110 NF1P21359 2839 aa4.52□□□□□ -1.69
HMGB3-202ENST00000419110 MAST4O15021 2626 aa4.52□□□□□ -1.69
HMGB3-202ENST00000419110 TRAV8-1A0A0A6YYK1 113 aa4.51□□□□□ -1.69
HMGB3-202ENST00000419110 TRAV8-2A0A0B4J237 113 aa4.51□□□□□ -1.69
HMGB3-202ENST00000419110 KRTAP4-8A0A0G2JLE6 195 aa4.51□□□□□ -1.69
HMGB3-202ENST00000419110 OR4C46A6NHA9 309 aa4.51□□□□□ -1.69
HMGB3-202ENST00000419110 SOCS3O14543 225 aa4.51□□□□□ -1.69
HMGB3-202ENST00000419110 EDN2P20800 178 aa4.51□□□□□ -1.69
HMGB3-202ENST00000419110 CBLN1P23435 193 aa4.51□□□□□ -1.69
HMGB3-202ENST00000419110 HLA-DMBP28068 263 aa4.51□□□□□ -1.69
HMGB3-202ENST00000419110 ERVFC1-1P60608 527 aa4.51□□□□□ -1.69
HMGB3-202ENST00000419110 HIST1H1AQ02539 215 aaPredicted RBP4.51□□□□□ -1.69
HMGB3-202ENST00000419110 BTN1A1Q13410 526 aa4.51□□□□□ -1.69
HMGB3-202ENST00000419110 SAPCD1Q5SSQ6 148 aa4.51□□□□□ -1.69
HMGB3-202ENST00000419110 RBPMS2Q6ZRY4 209 aaKnown RBP4.51□□□□□ -1.69
HMGB3-202ENST00000419110 TMEM183AQ8IXX5 376 aa4.51□□□□□ -1.69
HMGB3-202ENST00000419110 Q8TAT8 98 aa4.51□□□□□ -1.69
HMGB3-202ENST00000419110 DLX4Q92988 240 aaPredicted RBP4.51□□□□□ -1.69
HMGB3-202ENST00000419110 MS4A6AQ9H2W1 248 aa4.51□□□□□ -1.69
HMGB3-202ENST00000419110 OSTCQ9NRP0 149 aa4.51□□□□□ -1.69
HMGB3-202ENST00000419110 TMEM242Q9NWH2 141 aa4.51□□□□□ -1.69
HMGB3-202ENST00000419110 AURKAIP1Q9NWT8 199 aaPredicted RBP4.51□□□□□ -1.69
HMGB3-202ENST00000419110 MLXQ9UH92 298 aa4.51□□□□□ -1.69
HMGB3-202ENST00000419110 PSG8Q9UQ74 426 aa4.51□□□□□ -1.69
HMGB3-202ENST00000419110 ZFP30Q9Y2G7 519 aa4.51□□□□□ -1.69
HMGB3-202ENST00000419110 TRAV9-1A0A075B6T8 112 aa4.5□□□□□ -1.69
HMGB3-202ENST00000419110 TRAV25A0A0B4J276 109 aa4.5□□□□□ -1.69
HMGB3-202ENST00000419110 A0A1W2PPQ1 181 aa4.5□□□□□ -1.69
HMGB3-202ENST00000419110 ZNF705GA8MUZ8 300 aaPredicted RBP4.5□□□□□ -1.69
HMGB3-202ENST00000419110 K7EN84 100 aa4.5□□□□□ -1.69
HMGB3-202ENST00000419110 K7EQG2 157 aa4.5□□□□□ -1.69
HMGB3-202ENST00000419110 EREGO14944 169 aa4.5□□□□□ -1.69
HMGB3-202ENST00000419110 GATCO43716 136 aaKnown RBP4.5□□□□□ -1.69
HMGB3-202ENST00000419110 SAP30O75446 220 aa4.5□□□□□ -1.69
HMGB3-202ENST00000419110 GCGP01275 180 aa4.5□□□□□ -1.69
HMGB3-202ENST00000419110 P01737 135 aa4.5□□□□□ -1.69
HMGB3-202ENST00000419110 ZNF688P0C7X2 276 aa4.5□□□□□ -1.69
HMGB3-202ENST00000419110 TFPI2P48307 235 aa4.5□□□□□ -1.69
HMGB3-202ENST00000419110 ZNF138P52744 262 aa4.5□□□□□ -1.69
HMGB3-202ENST00000419110 SMUG1Q53HV7 270 aa4.5□□□□□ -1.69
HMGB3-202ENST00000419110 CT83Q5H943 113 aa4.5□□□□□ -1.69
HMGB3-202ENST00000419110 PSMG4Q5JS54 123 aa4.5□□□□□ -1.69
HMGB3-202ENST00000419110 FAM162BQ5T6X4 162 aa4.5□□□□□ -1.69
HMGB3-202ENST00000419110 IGFL4Q6B9Z1 124 aa4.5□□□□□ -1.69
HMGB3-202ENST00000419110 LCN12Q6JVE5 192 aa4.5□□□□□ -1.69
HMGB3-202ENST00000419110 FAM231DQ6ZW35 169 aa4.5□□□□□ -1.69
HMGB3-202ENST00000419110 TMEM61Q8N0U2 210 aa4.5□□□□□ -1.69
HMGB3-202ENST00000419110 OR4B1Q8NGF8 309 aa4.5□□□□□ -1.69
HMGB3-202ENST00000419110 OCC1Q8TAD7 63 aa4.5□□□□□ -1.69
HMGB3-202ENST00000419110 DCANP1Q8TF63 244 aa4.5□□□□□ -1.69
HMGB3-202ENST00000419110 DAZAP1Q96EP5 407 aaKnown RBP4.5□□□□□ -1.69
HMGB3-202ENST00000419110 SGK494Q96LW2 274 aa4.5□□□□□ -1.69
HMGB3-202ENST00000419110 LINC00479Q96M42 142 aa4.5□□□□□ -1.69
HMGB3-202ENST00000419110 SPAG8Q99932 426 aaPredicted RBP4.5□□□□□ -1.69
HMGB3-202ENST00000419110 RPP21Q9H633 154 aaKnown RBP4.5□□□□□ -1.69
HMGB3-202ENST00000419110 SIGLEC8Q9NYZ4 499 aa4.5□□□□□ -1.69
HMGB3-202ENST00000419110 LENEPQ9Y5L5 61 aa4.5□□□□□ -1.69
HMGB3-202ENST00000419110 JMJD1CQ15652 2540 aa4.5□□□□□ -1.69
HMGB3-202ENST00000419110 TEP1Q99973 2627 aaKnown RBP4.5□□□□□ -1.69
HMGB3-202ENST00000419110 XKRY2A2RUG3 117 aa4.49□□□□□ -1.69
HMGB3-202ENST00000419110 ZNF705FA8MVS1 300 aaPredicted RBP4.49□□□□□ -1.69
HMGB3-202ENST00000419110 NPIPB6E9PJ23 425 aa4.49□□□□□ -1.69
HMGB3-202ENST00000419110 DUSP14O95147 198 aaKnown RBP4.49□□□□□ -1.69
HMGB3-202ENST00000419110 IGLV2-11P01706 119 aa4.49□□□□□ -1.69
HMGB3-202ENST00000419110 IGLV2-8P01709 118 aa4.49□□□□□ -1.69
HMGB3-202ENST00000419110 CSN3P07498 182 aa4.49□□□□□ -1.69
HMGB3-202ENST00000419110 OR5I1Q13606 314 aa4.49□□□□□ -1.69
HMGB3-202ENST00000419110 HIST2H2BDQ6DRA6 164 aa4.49□□□□□ -1.69
HMGB3-202ENST00000419110 CDPF1Q6NVV7 123 aa4.49□□□□□ -1.69
HMGB3-202ENST00000419110 EBLN2Q6P2I7 272 aa4.49□□□□□ -1.69
HMGB3-202ENST00000419110 FOXI2Q6ZQN5 318 aa4.49□□□□□ -1.69
HMGB3-202ENST00000419110 C9orf47Q6ZRZ4 202 aa4.49□□□□□ -1.69
HMGB3-202ENST00000419110 WFDC3Q8IUB2 231 aa4.49□□□□□ -1.69
HMGB3-202ENST00000419110 OR8A1Q8NGG7 326 aa4.49□□□□□ -1.69
HMGB3-202ENST00000419110 OR2K2Q8NGT1 345 aa4.49□□□□□ -1.69
HMGB3-202ENST00000419110 ZC2HC1AQ96GY0 325 aa4.49□□□□□ -1.69
HMGB3-202ENST00000419110 C20orf173Q96LM9 149 aa4.49□□□□□ -1.69
HMGB3-202ENST00000419110 ODF3Q96PU9 254 aa4.49□□□□□ -1.69
HMGB3-202ENST00000419110 PRR25Q96S07 402 aa4.49□□□□□ -1.69
HMGB3-202ENST00000419110 IMMP2LQ96T52 175 aa4.49□□□□□ -1.69
HMGB3-202ENST00000419110 RNASE7Q9H1E1 156 aaKnown RBP4.49□□□□□ -1.69
HMGB3-202ENST00000419110 TUBA4BQ9H853 241 aa4.49□□□□□ -1.69
HMGB3-202ENST00000419110 IL36BQ9NZH7 164 aa4.49□□□□□ -1.69
HMGB3-202ENST00000419110 URGCP-MRPS24S4R325 110 aa4.49□□□□□ -1.69
HMGB3-202ENST00000419110 TRBV7-9A0A0J9YWB2 115 aa4.48□□□□□ -1.69
HMGB3-202ENST00000419110 CYSRT1A8MQ03 144 aa4.48□□□□□ -1.69
HMGB3-202ENST00000419110 PRAC2D3DTV9 90 aa4.48□□□□□ -1.69
HMGB3-202ENST00000419110 EIF4EBP3O60516 100 aaPredicted RBP4.48□□□□□ -1.69
HMGB3-202ENST00000419110 SH2D1AO60880 128 aa4.48□□□□□ -1.69
HMGB3-202ENST00000419110 LEPP41159 167 aa4.48□□□□□ -1.69
HMGB3-202ENST00000419110 Q6AWC8 147 aa4.48□□□□□ -1.69
HMGB3-202ENST00000419110 LINC00482Q8N8I6 264 aa4.48□□□□□ -1.69
HMGB3-202ENST00000419110 BORCS7Q96B45 105 aa4.48□□□□□ -1.69
HMGB3-202ENST00000419110 C8orf49Q96NF6 230 aa4.48□□□□□ -1.69
HMGB3-202ENST00000419110 CITED1Q99966 193 aa4.48□□□□□ -1.69
HMGB3-202ENST00000419110 VGLL1Q99990 258 aa4.48□□□□□ -1.69
HMGB3-202ENST00000419110 MLST8Q9BVC4 326 aa4.48□□□□□ -1.69
HMGB3-202ENST00000419110 GPR61Q9BZJ8 451 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 92.8 ms