RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 NIPSNAP3BQ9BS92 247 aa10.6□□□□□ -0.71
LIMS1-206ENST00000414829 MAP1LC3BQ9GZQ8 125 aa10.6□□□□□ -0.71
LIMS1-206ENST00000414829 LENEPQ9Y5L5 61 aa10.6□□□□□ -0.71
LIMS1-206ENST00000414829 IGKV2-40A0A087WW87 121 aaPredicted RBP10.59□□□□□ -0.71
LIMS1-206ENST00000414829 A0A1W2PRE2 83 aa10.59□□□□□ -0.71
LIMS1-206ENST00000414829 PGPA6NDG6 321 aa10.59□□□□□ -0.71
LIMS1-206ENST00000414829 CXorf65A6NEN9 183 aa10.59□□□□□ -0.71
LIMS1-206ENST00000414829 NUPR2A6NF83 97 aa10.59□□□□□ -0.71
LIMS1-206ENST00000414829 FBLL1A6NHQ2 334 aaKnown RBP10.59□□□□□ -0.71
LIMS1-206ENST00000414829 CRXO43186 299 aaPredicted RBP10.59□□□□□ -0.71
LIMS1-206ENST00000414829 IGKV2D-40P01614 121 aaPredicted RBP10.59□□□□□ -0.71
LIMS1-206ENST00000414829 ZNF138P52744 262 aa10.59□□□□□ -0.71
LIMS1-206ENST00000414829 LGALSLQ3ZCW2 172 aaPredicted RBP10.59□□□□□ -0.71
LIMS1-206ENST00000414829 C1orf158Q8N1D5 194 aa10.59□□□□□ -0.71
LIMS1-206ENST00000414829 TCEAL7Q9BRU2 100 aa10.59□□□□□ -0.71
LIMS1-206ENST00000414829 ARL2-SNX15V9GYD0 113 aa10.59□□□□□ -0.71
LIMS1-206ENST00000414829 NBEAL2Q6ZNJ1 2754 aa10.59□□□□□ -0.71
LIMS1-206ENST00000414829 TENM3Q9P273 2699 aa10.58□□□□□ -0.72
LIMS1-206ENST00000414829 TRAV12-2A0A075B6T6 113 aa10.58□□□□□ -0.72
LIMS1-206ENST00000414829 LOC102723971A0A1B0GUV8 181 aa10.58□□□□□ -0.72
LIMS1-206ENST00000414829 DIRC3C9JPN6 131 aa10.58□□□□□ -0.72
LIMS1-206ENST00000414829 TEX46H3BTG2 121 aa10.58□□□□□ -0.72
LIMS1-206ENST00000414829 CT45A10P0DMU9 189 aa10.58□□□□□ -0.72
LIMS1-206ENST00000414829 CRISP2P16562 243 aa10.58□□□□□ -0.72
LIMS1-206ENST00000414829 PPT1P50897 306 aa10.58□□□□□ -0.72
LIMS1-206ENST00000414829 FAM213BQ8TBF2 198 aa10.58□□□□□ -0.72
LIMS1-206ENST00000414829 LINC01587Q99440 93 aa10.58□□□□□ -0.72
LIMS1-206ENST00000414829 NDFIP1Q9BT67 221 aa10.58□□□□□ -0.72
LIMS1-206ENST00000414829 C7orf71A4D174 169 aa10.57□□□□□ -0.72
LIMS1-206ENST00000414829 EIF3GO75821 320 aaKnown RBP eCLIP10.57□□□□□ -0.72
LIMS1-206ENST00000414829 ZNF726P1Q15940 193 aa10.57□□□□□ -0.72
LIMS1-206ENST00000414829 CASC10Q5T4H9 136 aa10.57□□□□□ -0.72
LIMS1-206ENST00000414829 GFI1BQ5VTD9 330 aa10.57□□□□□ -0.72
LIMS1-206ENST00000414829 ZNF493Q6ZR52 646 aa10.57□□□□□ -0.72
LIMS1-206ENST00000414829 CCDC28AQ8IWP9 274 aa10.57□□□□□ -0.72
LIMS1-206ENST00000414829 C16orf74Q96GX8 76 aa10.57□□□□□ -0.72
LIMS1-206ENST00000414829 PYGO2Q9BRQ0 406 aa10.57□□□□□ -0.72
LIMS1-206ENST00000414829 AGPAT4-IT1Q9H0P7 198 aa10.57□□□□□ -0.72
LIMS1-206ENST00000414829 ZNF492Q9P255 531 aa10.57□□□□□ -0.72
LIMS1-206ENST00000414829 AGRNO00468 2067 aa10.56□□□□□ -0.72
LIMS1-206ENST00000414829 KLLNB2CW77 178 aa10.56□□□□□ -0.72
LIMS1-206ENST00000414829 C11orf94C9JXX5 98 aa10.56□□□□□ -0.72
LIMS1-206ENST00000414829 GPX1P07203 203 aa10.56□□□□□ -0.72
LIMS1-206ENST00000414829 SPART-AS1P0CW21 52 aa10.56□□□□□ -0.72
LIMS1-206ENST00000414829 RBMY1A1P0DJD3 496 aaKnown RBP10.56□□□□□ -0.72
LIMS1-206ENST00000414829 RBMY1CP0DJD4 496 aa10.56□□□□□ -0.72
LIMS1-206ENST00000414829 ERCC8Q13216 396 aa10.56□□□□□ -0.72
LIMS1-206ENST00000414829 RBMY1FQ15415 496 aaKnown RBP10.56□□□□□ -0.72
LIMS1-206ENST00000414829 GOLT1AQ6ZVE7 132 aa10.56□□□□□ -0.72
LIMS1-206ENST00000414829 FAM19A4Q96LR4 140 aa10.56□□□□□ -0.72
LIMS1-206ENST00000414829 RPH3ALQ9UNE2 315 aa10.56□□□□□ -0.72
LIMS1-206ENST00000414829 KLK5Q9Y337 293 aaPredicted RBP10.56□□□□□ -0.72
LIMS1-206ENST00000414829 F6UZH7 168 aa10.55□□□□□ -0.72
LIMS1-206ENST00000414829 DEFB4AO15263 64 aa10.55□□□□□ -0.72
LIMS1-206ENST00000414829 SSX7Q7RTT5 188 aa10.55□□□□□ -0.72
LIMS1-206ENST00000414829 CYB561D1Q8N8Q1 229 aa10.55□□□□□ -0.72
LIMS1-206ENST00000414829 TMEM263Q8WUH6 116 aaKnown RBP10.55□□□□□ -0.72
LIMS1-206ENST00000414829 SFT2D1Q8WV19 159 aa10.55□□□□□ -0.72
LIMS1-206ENST00000414829 MBD3L1Q8WWY6 194 aa10.55□□□□□ -0.72
LIMS1-206ENST00000414829 VGLL1Q99990 258 aa10.55□□□□□ -0.72
LIMS1-206ENST00000414829 ATG101Q9BSB4 218 aa10.55□□□□□ -0.72
LIMS1-206ENST00000414829 GGTLC3B5MD39 225 aa10.54□□□□□ -0.72
LIMS1-206ENST00000414829 IFNA7P01567 189 aa10.54□□□□□ -0.72
LIMS1-206ENST00000414829 TCRAP04437 139 aa10.54□□□□□ -0.72
LIMS1-206ENST00000414829 H2AFB1P0C5Y9 115 aa10.54□□□□□ -0.72
LIMS1-206ENST00000414829 FHITP49789 147 aa10.54□□□□□ -0.72
LIMS1-206ENST00000414829 SUMO1P63165 101 aaKnown RBP10.54□□□□□ -0.72
LIMS1-206ENST00000414829 PMS2P11Q13670 270 aa10.54□□□□□ -0.72
LIMS1-206ENST00000414829 ZFAND6Q6FIF0 208 aa10.54□□□□□ -0.72
LIMS1-206ENST00000414829 C9orf62Q8N4C0 152 aa10.54□□□□□ -0.72
LIMS1-206ENST00000414829 ZNF680Q8NEM1 530 aa10.54□□□□□ -0.72
LIMS1-206ENST00000414829 HIST1H2BAQ96A08 127 aa10.54□□□□□ -0.72
LIMS1-206ENST00000414829 EPDR1Q9UM22 224 aa10.54□□□□□ -0.72
LIMS1-206ENST00000414829 TRAV12-3A0A0B4J271 114 aa10.53□□□□□ -0.72
LIMS1-206ENST00000414829 LYRM9A8MSI8 78 aa10.53□□□□□ -0.72
LIMS1-206ENST00000414829 J3KRW8 73 aa10.53□□□□□ -0.72
LIMS1-206ENST00000414829 PRB4P10163 310 aaPredicted RBP10.53□□□□□ -0.72
LIMS1-206ENST00000414829 EMP1P54849 157 aa10.53□□□□□ -0.72
LIMS1-206ENST00000414829 FGF8P55075 233 aaPredicted RBP10.53□□□□□ -0.72
LIMS1-206ENST00000414829 ZFAND2AQ8N6M9 145 aa10.53□□□□□ -0.72
LIMS1-206ENST00000414829 TMEM75Q8N9X5 138 aa10.53□□□□□ -0.72
LIMS1-206ENST00000414829 Q8TAT8 98 aa10.53□□□□□ -0.72
LIMS1-206ENST00000414829 LINC00467Q9BRT7 94 aa10.53□□□□□ -0.72
LIMS1-206ENST00000414829 YTHDF2Q9Y5A9 579 aaKnown RBP10.53□□□□□ -0.72
LIMS1-206ENST00000414829 A0A1B0GVG6 124 aa10.52□□□□□ -0.73
LIMS1-206ENST00000414829 FAM74A7A6NL05 159 aa10.52□□□□□ -0.73
LIMS1-206ENST00000414829 ZNF705GA8MUZ8 300 aaPredicted RBP10.52□□□□□ -0.73
LIMS1-206ENST00000414829 RNASE4P34096 147 aaKnown RBP10.52□□□□□ -0.73
LIMS1-206ENST00000414829 SULT1A2P50226 295 aa10.52□□□□□ -0.73
LIMS1-206ENST00000414829 CEMP1Q6PRD7 247 aaPredicted RBP10.52□□□□□ -0.73
LIMS1-206ENST00000414829 PHLDA1Q8WV24 401 aaPredicted RBP10.52□□□□□ -0.73
LIMS1-206ENST00000414829 DKK2Q9UBU2 259 aa10.52□□□□□ -0.73
LIMS1-206ENST00000414829 TRAV10A0A0B4J240 114 aa10.51□□□□□ -0.73
LIMS1-206ENST00000414829 TRAV1-1A0A0B4J248 108 aa10.51□□□□□ -0.73
LIMS1-206ENST00000414829 RGS13O14921 159 aa10.51□□□□□ -0.73
LIMS1-206ENST00000414829 HTN1P15515 57 aa10.51□□□□□ -0.73
LIMS1-206ENST00000414829 TCTAP57738 103 aa10.51□□□□□ -0.73
LIMS1-206ENST00000414829 NANOS2P60321 138 aaKnown RBP10.51□□□□□ -0.73
LIMS1-206ENST00000414829 UBE2G2P60604 165 aa10.51□□□□□ -0.73
LIMS1-206ENST00000414829 GNG5P63218 68 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms