RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 BAGE2Q86Y30 109 aa8.46□□□□□ -1.06
LINC00539-201ENST00000411525 ZNF738Q8NE65 137 aa8.46□□□□□ -1.06
LINC00539-201ENST00000411525 SMIM12Q96EX1 92 aa8.46□□□□□ -1.06
LINC00539-201ENST00000411525 SGK494Q96LW2 274 aa8.46□□□□□ -1.06
LINC00539-201ENST00000411525 TENM3Q9P273 2699 aa8.45□□□□□ -1.06
LINC00539-201ENST00000411525 TRAV2A0A0B4J234 112 aa8.45□□□□□ -1.06
LINC00539-201ENST00000411525 C7orf77A4D0Y5 90 aa8.45□□□□□ -1.06
LINC00539-201ENST00000411525 RBAKDNA6NC62 111 aa8.45□□□□□ -1.06
LINC00539-201ENST00000411525 PRAC2D3DTV9 90 aa8.45□□□□□ -1.06
LINC00539-201ENST00000411525 SCO1O75880 301 aa8.45□□□□□ -1.06
LINC00539-201ENST00000411525 LTAP01374 205 aa8.45□□□□□ -1.06
LINC00539-201ENST00000411525 TFPI2P48307 235 aa8.45□□□□□ -1.06
LINC00539-201ENST00000411525 DEFB114Q30KQ6 69 aa8.45□□□□□ -1.06
LINC00539-201ENST00000411525 RBPMS2Q6ZRY4 209 aaKnown RBP8.45□□□□□ -1.06
LINC00539-201ENST00000411525 PRNTQ86SH4 94 aa8.45□□□□□ -1.06
LINC00539-201ENST00000411525 WFDC3Q8IUB2 231 aa8.45□□□□□ -1.06
LINC00539-201ENST00000411525 TMEM61Q8N0U2 210 aa8.45□□□□□ -1.06
LINC00539-201ENST00000411525 LINC00482Q8N8I6 264 aa8.45□□□□□ -1.06
LINC00539-201ENST00000411525 OCC1Q8TAD7 63 aa8.45□□□□□ -1.06
LINC00539-201ENST00000411525 ISOC2Q96AB3 205 aa8.45□□□□□ -1.06
LINC00539-201ENST00000411525 RPS10P5Q9NQ39 176 aa8.45□□□□□ -1.06
LINC00539-201ENST00000411525 PSG8Q9UQ74 426 aa8.45□□□□□ -1.06
LINC00539-201ENST00000411525 TRAV25A0A0B4J276 109 aa8.44□□□□□ -1.06
LINC00539-201ENST00000411525 K7EN84 100 aa8.44□□□□□ -1.06
LINC00539-201ENST00000411525 TSPAN4O14817 238 aa8.44□□□□□ -1.06
LINC00539-201ENST00000411525 IGLV2-8P01709 118 aa8.44□□□□□ -1.06
LINC00539-201ENST00000411525 MGST1P10620 155 aaKnown RBP8.44□□□□□ -1.06
LINC00539-201ENST00000411525 SNRPD3P62318 126 aaKnown RBP8.44□□□□□ -1.06
LINC00539-201ENST00000411525 CD300EQ496F6 205 aaPredicted RBP8.44□□□□□ -1.06
LINC00539-201ENST00000411525 NHLRC2Q8NBF2 726 aa8.44□□□□□ -1.06
LINC00539-201ENST00000411525 GPR61Q9BZJ8 451 aa8.44□□□□□ -1.06
LINC00539-201ENST00000411525 DNAH3Q8TD57 4116 aa8.44□□□□□ -1.06
LINC00539-201ENST00000411525 A0A087WWC5 75 aa8.43□□□□□ -1.06
LINC00539-201ENST00000411525 SAP30O75446 220 aa8.43□□□□□ -1.06
LINC00539-201ENST00000411525 GCGP01275 180 aa8.43□□□□□ -1.06
LINC00539-201ENST00000411525 ZNF688P0C7X2 276 aa8.43□□□□□ -1.06
LINC00539-201ENST00000411525 IGLL1P15814 213 aa8.43□□□□□ -1.06
LINC00539-201ENST00000411525 RNF212Q495C1 297 aa8.43□□□□□ -1.06
LINC00539-201ENST00000411525 TMEM183AQ8IXX5 376 aa8.43□□□□□ -1.06
LINC00539-201ENST00000411525 FAM24BQ8N5W8 94 aa8.43□□□□□ -1.06
LINC00539-201ENST00000411525 Q8TAT8 98 aa8.43□□□□□ -1.06
LINC00539-201ENST00000411525 SPAG8Q99932 426 aaPredicted RBP8.43□□□□□ -1.06
LINC00539-201ENST00000411525 VGLL1Q99990 258 aa8.43□□□□□ -1.06
LINC00539-201ENST00000411525 MLST8Q9BVC4 326 aa8.43□□□□□ -1.06
LINC00539-201ENST00000411525 ZFP30Q9Y2G7 519 aa8.43□□□□□ -1.06
LINC00539-201ENST00000411525 MT-ND4LP03901 98 aa8.42□□□□□ -1.06
LINC00539-201ENST00000411525 OR5I1Q13606 314 aa8.42□□□□□ -1.06
LINC00539-201ENST00000411525 DEFB121Q5J5C9 76 aa8.42□□□□□ -1.06
LINC00539-201ENST00000411525 PSMG4Q5JS54 123 aa8.42□□□□□ -1.06
LINC00539-201ENST00000411525 C9orf47Q6ZRZ4 202 aa8.42□□□□□ -1.06
LINC00539-201ENST00000411525 OR10J6PQ8NGY7 276 aa8.42□□□□□ -1.06
LINC00539-201ENST00000411525 SFRP2Q96HF1 295 aa8.42□□□□□ -1.06
LINC00539-201ENST00000411525 NDFIP1Q9BT67 221 aa8.42□□□□□ -1.06
LINC00539-201ENST00000411525 CTDSP1Q9GZU7 261 aa8.42□□□□□ -1.06
LINC00539-201ENST00000411525 OR4C46A6NHA9 309 aa8.41□□□□□ -1.06
LINC00539-201ENST00000411525 NPIPB6E9PJ23 425 aa8.41□□□□□ -1.06
LINC00539-201ENST00000411525 IGLV1-51P01701 117 aa8.41□□□□□ -1.06
LINC00539-201ENST00000411525 ZNF138P52744 262 aa8.41□□□□□ -1.06
LINC00539-201ENST00000411525 ERVFC1-1P60608 527 aa8.41□□□□□ -1.06
LINC00539-201ENST00000411525 ERCC8Q13216 396 aa8.41□□□□□ -1.06
LINC00539-201ENST00000411525 SAPCD1Q5SSQ6 148 aa8.41□□□□□ -1.06
LINC00539-201ENST00000411525 TMEM78Q5T7P6 136 aa8.41□□□□□ -1.06
LINC00539-201ENST00000411525 PRR27Q6MZM9 219 aa8.41□□□□□ -1.06
LINC00539-201ENST00000411525 TMEM88Q6PEY1 159 aa8.41□□□□□ -1.06
LINC00539-201ENST00000411525 CBLN2Q8IUK8 224 aa8.41□□□□□ -1.06
LINC00539-201ENST00000411525 OR8A1Q8NGG7 326 aa8.41□□□□□ -1.06
LINC00539-201ENST00000411525 OR2K2Q8NGT1 345 aa8.41□□□□□ -1.06
LINC00539-201ENST00000411525 ANAPC16Q96DE5 110 aa8.41□□□□□ -1.06
LINC00539-201ENST00000411525 PRR25Q96S07 402 aa8.41□□□□□ -1.06
LINC00539-201ENST00000411525 ASCL2Q99929 193 aa8.41□□□□□ -1.06
LINC00539-201ENST00000411525 AGPAT4-IT1Q9H0P7 198 aa8.41□□□□□ -1.06
LINC00539-201ENST00000411525 BIN3Q9NQY0 253 aa8.41□□□□□ -1.06
LINC00539-201ENST00000411525 SMCO4Q9NRQ5 59 aa8.41□□□□□ -1.06
LINC00539-201ENST00000411525 ZMAT5Q9UDW3 170 aaKnown RBP8.41□□□□□ -1.06
LINC00539-201ENST00000411525 IZUMO1RA6ND01 250 aa8.4□□□□□ -1.06
LINC00539-201ENST00000411525 F6UB75 175 aa8.4□□□□□ -1.06
LINC00539-201ENST00000411525 H7BYZ3 331 aa8.4□□□□□ -1.06
LINC00539-201ENST00000411525 K7EIL1 84 aa8.4□□□□□ -1.06
LINC00539-201ENST00000411525 PPP1R2P9O14990 202 aa8.4□□□□□ -1.06
LINC00539-201ENST00000411525 DEFB1P60022 68 aa8.4□□□□□ -1.06
LINC00539-201ENST00000411525 HIST1H1AQ02539 215 aaPredicted RBP8.4□□□□□ -1.06
LINC00539-201ENST00000411525 BTN1A1Q13410 526 aa8.4□□□□□ -1.06
LINC00539-201ENST00000411525 C15orf54Q8N8G6 183 aa8.4□□□□□ -1.06
LINC00539-201ENST00000411525 OR10G8Q8NGN5 311 aa8.4□□□□□ -1.06
LINC00539-201ENST00000411525 C8orf49Q96NF6 230 aa8.4□□□□□ -1.06
LINC00539-201ENST00000411525 OSTCQ9NRP0 149 aa8.4□□□□□ -1.06
LINC00539-201ENST00000411525 TMEM242Q9NWH2 141 aa8.4□□□□□ -1.06
LINC00539-201ENST00000411525 PPP1R14DQ9NXH3 145 aa8.4□□□□□ -1.06
LINC00539-201ENST00000411525 ZNF492Q9P255 531 aa8.4□□□□□ -1.06
LINC00539-201ENST00000411525 ZNF705DP0CH99 300 aaPredicted RBP8.39□□□□□ -1.07
LINC00539-201ENST00000411525 ZNF705BP0CI00 300 aaPredicted RBP8.39□□□□□ -1.07
LINC00539-201ENST00000411525 CT45A10P0DMU9 189 aa8.39□□□□□ -1.07
LINC00539-201ENST00000411525 EGFEM1PQ0D2K5 195 aa8.39□□□□□ -1.07
LINC00539-201ENST00000411525 IBA57Q5T440 356 aaKnown RBP8.39□□□□□ -1.07
LINC00539-201ENST00000411525 FAM231DQ6ZW35 169 aa8.39□□□□□ -1.07
LINC00539-201ENST00000411525 COX8CQ7Z4L0 72 aa8.39□□□□□ -1.07
LINC00539-201ENST00000411525 ZC2HC1AQ96GY0 325 aa8.39□□□□□ -1.07
LINC00539-201ENST00000411525 LINC00477Q96M19 166 aa8.39□□□□□ -1.07
LINC00539-201ENST00000411525 MCRIP2Q9BUT9 160 aaKnown RBP8.39□□□□□ -1.07
LINC00539-201ENST00000411525 RNASE7Q9H1E1 156 aaKnown RBP8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms