RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 M0R2Z0 102 aa11.65□□□□□ -0.54
HMGA1-204ENST00000401473 KIR3DS1Q14943 382 aa11.65□□□□□ -0.54
HMGA1-204ENST00000401473 RBAKDNA6NC62 111 aa11.64□□□□□ -0.55
HMGA1-204ENST00000401473 CA1P00915 261 aaPredicted RBP11.64□□□□□ -0.55
HMGA1-204ENST00000401473 PPT1P50897 306 aa11.64□□□□□ -0.55
HMGA1-204ENST00000401473 APOC4P55056 127 aa11.64□□□□□ -0.55
HMGA1-204ENST00000401473 SPINK13Q1W4C9 94 aa11.64□□□□□ -0.55
HMGA1-204ENST00000401473 CSNK1G2-AS1Q8NCQ2 148 aa11.64□□□□□ -0.55
HMGA1-204ENST00000401473 LINC00477Q96M19 166 aa11.64□□□□□ -0.55
HMGA1-204ENST00000401473 RARRES2Q99969 163 aa11.64□□□□□ -0.55
HMGA1-204ENST00000401473 XCL2Q9UBD3 114 aa11.64□□□□□ -0.55
HMGA1-204ENST00000401473 C11orf94C9JXX5 98 aa11.63□□□□□ -0.55
HMGA1-204ENST00000401473 CRXO43186 299 aaPredicted RBP11.63□□□□□ -0.55
HMGA1-204ENST00000401473 IGLV2-11P01706 119 aa11.63□□□□□ -0.55
HMGA1-204ENST00000401473 NUTF2P61970 127 aaKnown RBP11.63□□□□□ -0.55
HMGA1-204ENST00000401473 Q8TAT8 98 aa11.63□□□□□ -0.55
HMGA1-204ENST00000401473 MANBALQ9NQG1 85 aa11.63□□□□□ -0.55
HMGA1-204ENST00000401473 MORN3Q6PF18 240 aaPredicted RBP11.63□□□□□ -0.55
HMGA1-204ENST00000401473 FAM19A4Q96LR4 140 aa11.63□□□□□ -0.55
HMGA1-204ENST00000401473 ATG101Q9BSB4 218 aa11.63□□□□□ -0.55
HMGA1-204ENST00000401473 ZNF492Q9P255 531 aa11.63□□□□□ -0.55
HMGA1-204ENST00000401473 TRAV12-2A0A075B6T6 113 aa11.62□□□□□ -0.55
HMGA1-204ENST00000401473 TRAV34A0A0B4J273 112 aa11.62□□□□□ -0.55
HMGA1-204ENST00000401473 DEFB135Q30KP9 77 aa11.62□□□□□ -0.55
HMGA1-204ENST00000401473 TMEM78Q5T7P6 136 aa11.62□□□□□ -0.55
HMGA1-204ENST00000401473 TVP23CQ96ET8 276 aa11.62□□□□□ -0.55
HMGA1-204ENST00000401473 TM2D3Q9BRN9 247 aa11.62□□□□□ -0.55
HMGA1-204ENST00000401473 PEX7O00628 323 aa11.61□□□□□ -0.55
HMGA1-204ENST00000401473 BCL2P10415 239 aa11.61□□□□□ -0.55
HMGA1-204ENST00000401473 Q6ZWC4 215 aa11.61□□□□□ -0.55
HMGA1-204ENST00000401473 CYB561D1Q8N8Q1 229 aa11.61□□□□□ -0.55
HMGA1-204ENST00000401473 HIST1H2BAQ96A08 127 aa11.61□□□□□ -0.55
HMGA1-204ENST00000401473 RETNQ9HD89 108 aa11.61□□□□□ -0.55
HMGA1-204ENST00000401473 UBE2CO00762 179 aa11.61□□□□□ -0.55
HMGA1-204ENST00000401473 CDKN1BP46527 198 aa11.61□□□□□ -0.55
HMGA1-204ENST00000401473 ZNF138P52744 262 aa11.61□□□□□ -0.55
HMGA1-204ENST00000401473 MEF2BQ02080 365 aaPredicted RBP11.61□□□□□ -0.55
HMGA1-204ENST00000401473 PPP1R14DQ9NXH3 145 aa11.61□□□□□ -0.55
HMGA1-204ENST00000401473 VAX2Q9UIW0 290 aa11.61□□□□□ -0.55
HMGA1-204ENST00000401473 SCO2A0A1W2PP80 73 aa11.6□□□□□ -0.55
HMGA1-204ENST00000401473 RBFOX3A6NFN3 312 aa11.6□□□□□ -0.55
HMGA1-204ENST00000401473 J3KRW8 73 aa11.6□□□□□ -0.55
HMGA1-204ENST00000401473 ZNF767PQ75MW2 155 aa11.6□□□□□ -0.55
HMGA1-204ENST00000401473 ODF3Q96PU9 254 aa11.6□□□□□ -0.55
HMGA1-204ENST00000401473 LOC102723971A0A1B0GUV8 181 aa11.59□□□□□ -0.55
HMGA1-204ENST00000401473 SERTM2A0A1B0GWG4 89 aa11.59□□□□□ -0.55
HMGA1-204ENST00000401473 ZFAND2AQ8N6M9 145 aa11.59□□□□□ -0.55
HMGA1-204ENST00000401473 C2CD4CQ8TF44 421 aa11.59□□□□□ -0.55
HMGA1-204ENST00000401473 OVOL2Q9BRP0 275 aa11.59□□□□□ -0.55
HMGA1-204ENST00000401473 KLF12Q9Y4X4 402 aa11.59□□□□□ -0.55
HMGA1-204ENST00000401473 IFNA1P01562 189 aa11.59□□□□□ -0.55
HMGA1-204ENST00000401473 RBMY1A1P0DJD3 496 aaKnown RBP11.59□□□□□ -0.55
HMGA1-204ENST00000401473 RBMY1CP0DJD4 496 aa11.59□□□□□ -0.55
HMGA1-204ENST00000401473 CRISP2P16562 243 aa11.59□□□□□ -0.55
HMGA1-204ENST00000401473 RBMY1FQ15415 496 aaKnown RBP11.59□□□□□ -0.55
HMGA1-204ENST00000401473 PRR9Q5T870 116 aa11.59□□□□□ -0.55
HMGA1-204ENST00000401473 Q6ZQT7 251 aa11.59□□□□□ -0.55
HMGA1-204ENST00000401473 C1orf158Q8N1D5 194 aa11.59□□□□□ -0.55
HMGA1-204ENST00000401473 TMEM75Q8N9X5 138 aa11.59□□□□□ -0.55
HMGA1-204ENST00000401473 RNF183Q96D59 192 aa11.59□□□□□ -0.55
HMGA1-204ENST00000401473 FAM210AQ96ND0 272 aa11.59□□□□□ -0.55
HMGA1-204ENST00000401473 TCEAL7Q9BRU2 100 aa11.59□□□□□ -0.55
HMGA1-204ENST00000401473 PSG8Q9UQ74 426 aa11.59□□□□□ -0.55
HMGA1-204ENST00000401473 KLLNB2CW77 178 aa11.58□□□□□ -0.56
HMGA1-204ENST00000401473 F6UZH7 168 aa11.58□□□□□ -0.56
HMGA1-204ENST00000401473 K7EQM0 130 aa11.58□□□□□ -0.56
HMGA1-204ENST00000401473 FLI1Q01543 452 aaPredicted RBP11.58□□□□□ -0.56
HMGA1-204ENST00000401473 GFI1BQ5VTD9 330 aa11.58□□□□□ -0.56
HMGA1-204ENST00000401473 IGF2BP2-AS1Q96M15 143 aa11.58□□□□□ -0.56
HMGA1-204ENST00000401473 TXNDC17Q9BRA2 123 aa11.58□□□□□ -0.56
HMGA1-204ENST00000401473 C1QTNF4Q9BXJ3 329 aa11.58□□□□□ -0.56
HMGA1-204ENST00000401473 TOR2AQ5JU69 321 aa11.57□□□□□ -0.56
HMGA1-204ENST00000401473 PRNTQ86SH4 94 aa11.57□□□□□ -0.56
HMGA1-204ENST00000401473 RCHY1Q96PM5 261 aa11.57□□□□□ -0.56
HMGA1-204ENST00000401473 DERL1Q9BUN8 251 aa11.57□□□□□ -0.56
HMGA1-204ENST00000401473 SPRY2O43597 315 aa11.57□□□□□ -0.56
HMGA1-204ENST00000401473 PRM2P04554 102 aa11.57□□□□□ -0.56
HMGA1-204ENST00000401473 TSPOP30536 169 aa11.57□□□□□ -0.56
HMGA1-204ENST00000401473 ZNF506Q5JVG8 444 aa11.57□□□□□ -0.56
HMGA1-204ENST00000401473 EIF5A2Q9GZV4 153 aaKnown RBP11.57□□□□□ -0.56
HMGA1-204ENST00000401473 LENEPQ9Y5L5 61 aa11.57□□□□□ -0.56
HMGA1-204ENST00000401473 TRBV7-9A0A0J9YWB2 115 aa11.56□□□□□ -0.56
HMGA1-204ENST00000401473 GPX1P07203 203 aa11.56□□□□□ -0.56
HMGA1-204ENST00000401473 TAGLN2P37802 199 aaKnown RBP11.56□□□□□ -0.56
HMGA1-204ENST00000401473 RAB14P61106 215 aa11.56□□□□□ -0.56
HMGA1-204ENST00000401473 SRSF3P84103 164 aaKnown RBP11.56□□□□□ -0.56
HMGA1-204ENST00000401473 BTN1A1Q13410 526 aa11.56□□□□□ -0.56
HMGA1-204ENST00000401473 CLLU1Q5K131 121 aa11.56□□□□□ -0.56
HMGA1-204ENST00000401473 ZNF705AQ6ZN79 300 aaPredicted RBP11.56□□□□□ -0.56
HMGA1-204ENST00000401473 C11orf52Q96A22 123 aa11.56□□□□□ -0.56
HMGA1-204ENST00000401473 C8orf49Q96NF6 230 aa11.56□□□□□ -0.56
HMGA1-204ENST00000401473 SPATA25Q9BR10 227 aa11.56□□□□□ -0.56
HMGA1-204ENST00000401473 TREM1Q9NP99 234 aa11.56□□□□□ -0.56
HMGA1-204ENST00000401473 TRAV12-3A0A0B4J271 114 aa11.55□□□□□ -0.56
HMGA1-204ENST00000401473 PDE6DO43924 150 aa11.55□□□□□ -0.56
HMGA1-204ENST00000401473 ZNF324O75467 553 aaPredicted RBP11.55□□□□□ -0.56
HMGA1-204ENST00000401473 AMBPP02760 352 aa11.55□□□□□ -0.56
HMGA1-204ENST00000401473 NHLRC4P0CG21 123 aaPredicted RBP11.55□□□□□ -0.56
HMGA1-204ENST00000401473 RNASE4P34096 147 aaKnown RBP11.55□□□□□ -0.56
HMGA1-204ENST00000401473 LEPP41159 167 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms