RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 TEX22C9J3V5 150 aa12.73□□□□□ -0.37
PCDH1-203ENST00000394536 H3BRN7 92 aa12.73□□□□□ -0.37
PCDH1-203ENST00000394536 PF4V1P10720 104 aa12.73□□□□□ -0.37
PCDH1-203ENST00000394536 SEC11AP67812 179 aa12.73□□□□□ -0.37
PCDH1-203ENST00000394536 LOXL1Q08397 574 aaPredicted RBP12.73□□□□□ -0.37
PCDH1-203ENST00000394536 TMEM219Q86XT9 240 aa12.73□□□□□ -0.37
PCDH1-203ENST00000394536 BCL6BQ8N143 479 aaPredicted RBP12.73□□□□□ -0.37
PCDH1-203ENST00000394536 LYPD1Q8N2G4 141 aa12.73□□□□□ -0.37
PCDH1-203ENST00000394536 PRR25Q96S07 402 aa12.73□□□□□ -0.37
PCDH1-203ENST00000394536 CEACAM4O75871 244 aa12.72□□□□□ -0.37
PCDH1-203ENST00000394536 TLN2Q9Y4G6 2542 aa12.72□□□□□ -0.37
PCDH1-203ENST00000394536 WNK1Q9H4A3 2382 aa12.72□□□□□ -0.37
PCDH1-203ENST00000394536 TMEM14CQ9P0S9 112 aa12.72□□□□□ -0.37
PCDH1-203ENST00000394536 CRYGCP07315 174 aa12.72□□□□□ -0.37
PCDH1-203ENST00000394536 COX8AP10176 69 aa12.72□□□□□ -0.37
PCDH1-203ENST00000394536 OCIAD2Q56VL3 154 aa12.72□□□□□ -0.37
PCDH1-203ENST00000394536 PRSS22Q9GZN4 317 aa12.72□□□□□ -0.37
PCDH1-203ENST00000394536 DKK2Q9UBU2 259 aa12.72□□□□□ -0.37
PCDH1-203ENST00000394536 IGLV1-47P01700 117 aa12.71□□□□□ -0.37
PCDH1-203ENST00000394536 EGR2P11161 476 aaPredicted RBP12.71□□□□□ -0.37
PCDH1-203ENST00000394536 ZC2HC1BQ5TFG8 222 aa12.71□□□□□ -0.37
PCDH1-203ENST00000394536 WFDC12Q8WWY7 111 aa12.71□□□□□ -0.37
PCDH1-203ENST00000394536 IGKV3-20P01619 116 aa12.71□□□□□ -0.37
PCDH1-203ENST00000394536 ZNF562Q6V9R5 426 aa12.71□□□□□ -0.37
PCDH1-203ENST00000394536 TMEM158Q8WZ71 300 aa12.71□□□□□ -0.37
PCDH1-203ENST00000394536 H3BVH4 76 aa12.71□□□□□ -0.38
PCDH1-203ENST00000394536 GATA1P15976 413 aaPredicted RBP12.71□□□□□ -0.38
PCDH1-203ENST00000394536 PCP2Q8IVA1 136 aa12.71□□□□□ -0.38
PCDH1-203ENST00000394536 TTTY13Q9BZ97 58 aa12.71□□□□□ -0.38
PCDH1-203ENST00000394536 SPRY2O43597 315 aa12.7□□□□□ -0.38
PCDH1-203ENST00000394536 RNF5Q99942 180 aa12.7□□□□□ -0.38
PCDH1-203ENST00000394536 IGHV2-70DA0A0C4DH43 119 aa12.7□□□□□ -0.38
PCDH1-203ENST00000394536 LOC107984156A0A0G2JMH3 177 aa12.7□□□□□ -0.38
PCDH1-203ENST00000394536 G3V318 75 aa12.7□□□□□ -0.38
PCDH1-203ENST00000394536 ARL17AQ8IVW1 177 aa12.7□□□□□ -0.38
PCDH1-203ENST00000394536 TRGV3P03979 118 aa12.7□□□□□ -0.38
PCDH1-203ENST00000394536 SCGB1C2P0DMR2 95 aa12.7□□□□□ -0.38
PCDH1-203ENST00000394536 HSD52Q0P140 79 aa12.7□□□□□ -0.38
PCDH1-203ENST00000394536 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.7□□□□□ -0.38
PCDH1-203ENST00000394536 JKAMPQ9P055 326 aa12.7□□□□□ -0.38
PCDH1-203ENST00000394536 INS-IGF2F8WCM5 200 aa12.69□□□□□ -0.38
PCDH1-203ENST00000394536 ATP5G2Q06055 141 aa12.69□□□□□ -0.38
PCDH1-203ENST00000394536 OR10J6PQ8NGY7 276 aa12.69□□□□□ -0.38
PCDH1-203ENST00000394536 TAX1BP3O14907 124 aa12.69□□□□□ -0.38
PCDH1-203ENST00000394536 SMAD7O15105 426 aaKnown RBP12.69□□□□□ -0.38
PCDH1-203ENST00000394536 NDUFS7O75251 213 aa12.69□□□□□ -0.38
PCDH1-203ENST00000394536 DEFB125Q8N687 156 aa12.69□□□□□ -0.38
PCDH1-203ENST00000394536 SRD5A1P18405 259 aa12.69□□□□□ -0.38
PCDH1-203ENST00000394536 EEF1AKMT3Q96AZ1 226 aa12.69□□□□□ -0.38
PCDH1-203ENST00000394536 MAP1AP78559 2803 aaPredicted RBP12.69□□□□□ -0.38
PCDH1-203ENST00000394536 TRAV26-2A0A0B4J265 109 aa12.68□□□□□ -0.38
PCDH1-203ENST00000394536 TNFRSF6BO95407 300 aa12.68□□□□□ -0.38
PCDH1-203ENST00000394536 NXT2Q9NPJ8 142 aaKnown RBP12.68□□□□□ -0.38
PCDH1-203ENST00000394536 USP9XQ93008 2570 aaPredicted RBP12.68□□□□□ -0.38
PCDH1-203ENST00000394536 OR11H12B2RN74 326 aa12.68□□□□□ -0.38
PCDH1-203ENST00000394536 IGKCP01834 107 aa12.68□□□□□ -0.38
PCDH1-203ENST00000394536 IL17RELQ6ZVW7 336 aa12.68□□□□□ -0.38
PCDH1-203ENST00000394536 OR11H1Q8NG94 326 aa12.68□□□□□ -0.38
PCDH1-203ENST00000394536 OR4X2Q8NGF9 303 aa12.68□□□□□ -0.38
PCDH1-203ENST00000394536 OR11H2Q8NH07 326 aa12.68□□□□□ -0.38
PCDH1-203ENST00000394536 MUC3AQ02505 3323 aa12.68□□□□□ -0.38
PCDH1-203ENST00000394536 PRTN3P24158 256 aa12.68□□□□□ -0.38
PCDH1-203ENST00000394536 FAM74A4Q5TZK3 123 aa12.68□□□□□ -0.38
PCDH1-203ENST00000394536 SCGB3A1Q96QR1 104 aa12.68□□□□□ -0.38
PCDH1-203ENST00000394536 DPM2O94777 84 aa12.67□□□□□ -0.38
PCDH1-203ENST00000394536 PPBPP02775 128 aa12.67□□□□□ -0.38
PCDH1-203ENST00000394536 MYCNOSP40205 109 aa12.67□□□□□ -0.38
PCDH1-203ENST00000394536 PDE6HQ13956 83 aa12.67□□□□□ -0.38
PCDH1-203ENST00000394536 ADGRG4Q8IZF6 3080 aa12.67□□□□□ -0.38
PCDH1-203ENST00000394536 K7EMI3 77 aa12.67□□□□□ -0.38
PCDH1-203ENST00000394536 SAMD5Q5TGI4 173 aa12.67□□□□□ -0.38
PCDH1-203ENST00000394536 URB1-AS1Q96HZ7 61 aa12.67□□□□□ -0.38
PCDH1-203ENST00000394536 ATP5LO75964 103 aa12.67□□□□□ -0.38
PCDH1-203ENST00000394536 C8orf31Q8N9H6 132 aa12.67□□□□□ -0.38
PCDH1-203ENST00000394536 SCRT2Q9NQ03 307 aa12.67□□□□□ -0.38
PCDH1-203ENST00000394536 TRAV40A0A0B4J280 105 aa12.66□□□□□ -0.38
PCDH1-203ENST00000394536 LCNL1Q6ZST4 164 aa12.66□□□□□ -0.38
PCDH1-203ENST00000394536 OR9G4Q8NGQ1 327 aa12.66□□□□□ -0.38
PCDH1-203ENST00000394536 RAB9AP51151 201 aa12.66□□□□□ -0.38
PCDH1-203ENST00000394536 LINC01545Q5VT33 79 aa12.66□□□□□ -0.38
PCDH1-203ENST00000394536 TTC9CQ8N5M4 171 aa12.66□□□□□ -0.38
PCDH1-203ENST00000394536 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.66□□□□□ -0.38
PCDH1-203ENST00000394536 MTURNQ8N3F0 131 aa12.65□□□□□ -0.38
PCDH1-203ENST00000394536 RNASE4P34096 147 aaKnown RBP12.65□□□□□ -0.38
PCDH1-203ENST00000394536 DYNAPQ8N1N2 210 aa12.65□□□□□ -0.38
PCDH1-203ENST00000394536 TNRC6BQ9UPQ9 1833 aaKnown RBP12.64□□□□□ -0.39
PCDH1-203ENST00000394536 CRIP1P50238 77 aa12.64□□□□□ -0.39
PCDH1-203ENST00000394536 KHDC1LQ5JSQ8 128 aa12.64□□□□□ -0.39
PCDH1-203ENST00000394536 HIVEP3Q5T1R4 2406 aa12.64□□□□□ -0.39
PCDH1-203ENST00000394536 H7C2G1 150 aa12.64□□□□□ -0.39
PCDH1-203ENST00000394536 ATP6V0E1O15342 81 aa12.64□□□□□ -0.39
PCDH1-203ENST00000394536 FCN3O75636 299 aa12.64□□□□□ -0.39
PCDH1-203ENST00000394536 BRD3OSQ6XYD6 125 aa12.64□□□□□ -0.39
PCDH1-203ENST00000394536 NACAE9PAV3 2078 aa12.64□□□□□ -0.39
PCDH1-203ENST00000394536 TMEM8BA6NDV4 472 aa12.63□□□□□ -0.39
PCDH1-203ENST00000394536 SAP30O75446 220 aa12.63□□□□□ -0.39
PCDH1-203ENST00000394536 K7ERJ3 54 aa12.63□□□□□ -0.39
PCDH1-203ENST00000394536 Q1RN00 199 aa12.63□□□□□ -0.39
PCDH1-203ENST00000394536 JMJD8Q96S16 334 aa12.63□□□□□ -0.39
PCDH1-203ENST00000394536 RAXQ9Y2V3 346 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms