RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 SNRPD3P62318 126 aaKnown RBP20.12■□□□□ 0.81
MSX1-201ENST00000382723 PSMG4Q5JS54 123 aa20.12■□□□□ 0.81
MSX1-201ENST00000382723 SIGLEC8Q9NYZ4 499 aa20.12■□□□□ 0.81
MSX1-201ENST00000382723 ERVFC1-1P60608 527 aa20.11■□□□□ 0.81
MSX1-201ENST00000382723 TMEM183AQ8IXX5 376 aa20.11■□□□□ 0.81
MSX1-201ENST00000382723 LINC00482Q8N8I6 264 aa20.11■□□□□ 0.81
MSX1-201ENST00000382723 RNASE7Q9H1E1 156 aaKnown RBP20.11■□□□□ 0.81
MSX1-201ENST00000382723 ZFP30Q9Y2G7 519 aa20.11■□□□□ 0.81
MSX1-201ENST00000382723 F6UB75 175 aa20.1■□□□□ 0.81
MSX1-201ENST00000382723 SMIM12Q96EX1 92 aa20.1■□□□□ 0.81
MSX1-201ENST00000382723 AGPAT4-IT1Q9H0P7 198 aa20.1■□□□□ 0.81
MSX1-201ENST00000382723 SMCO4Q9NRQ5 59 aa20.1■□□□□ 0.81
MSX1-201ENST00000382723 C8orf49Q96NF6 230 aa20.1■□□□□ 0.81
MSX1-201ENST00000382723 ATRQ13535 2644 aa20.09■□□□□ 0.81
MSX1-201ENST00000382723 IZUMO1RA6ND01 250 aa20.09■□□□□ 0.81
MSX1-201ENST00000382723 TMEM78Q5T7P6 136 aa20.09■□□□□ 0.81
MSX1-201ENST00000382723 FBLL1A6NHQ2 334 aaKnown RBP20.08■□□□□ 0.81
MSX1-201ENST00000382723 H7BYZ3 331 aa20.08■□□□□ 0.81
MSX1-201ENST00000382723 OR10G8Q8NGN5 311 aa20.08■□□□□ 0.81
MSX1-201ENST00000382723 OR10J6PQ8NGY7 276 aa20.08■□□□□ 0.81
MSX1-201ENST00000382723 ANAPC16Q96DE5 110 aa20.08■□□□□ 0.81
MSX1-201ENST00000382723 GPR61Q9BZJ8 451 aa20.08■□□□□ 0.81
MSX1-201ENST00000382723 CTDSP1Q9GZU7 261 aa20.08■□□□□ 0.81
MSX1-201ENST00000382723 HIST1H1AQ02539 215 aaPredicted RBP20.08■□□□□ 0.8
MSX1-201ENST00000382723 PRR25Q96S07 402 aa20.08■□□□□ 0.8
MSX1-201ENST00000382723 C9orf47Q6ZRZ4 202 aa20.07■□□□□ 0.8
MSX1-201ENST00000382723 ZC2HC1AQ96GY0 325 aa20.07■□□□□ 0.8
MSX1-201ENST00000382723 IBA57Q5T440 356 aaKnown RBP20.06■□□□□ 0.8
MSX1-201ENST00000382723 OR8A1Q8NGG7 326 aa20.06■□□□□ 0.8
MSX1-201ENST00000382723 FBN1P35555 2871 aaKnown RBP20.06■□□□□ 0.8
MSX1-201ENST00000382723 ZNF138P52744 262 aa20.06■□□□□ 0.8
MSX1-201ENST00000382723 SAPCD1Q5SSQ6 148 aa20.06■□□□□ 0.8
MSX1-201ENST00000382723 LINC00322Q6ZN03 302 aaPredicted RBP20.06■□□□□ 0.8
MSX1-201ENST00000382723 C15orf54Q8N8G6 183 aa20.06■□□□□ 0.8
MSX1-201ENST00000382723 URGCP-MRPS24S4R325 110 aa20.06■□□□□ 0.8
MSX1-201ENST00000382723 LOC105371267A0A1B0GV96 52 aa20.05■□□□□ 0.8
MSX1-201ENST00000382723 NDFIP1Q9BT67 221 aa20.05■□□□□ 0.8
MSX1-201ENST00000382723 TMEM242Q9NWH2 141 aa20.05■□□□□ 0.8
MSX1-201ENST00000382723 TRAV25A0A0B4J276 109 aa20.04■□□□□ 0.8
MSX1-201ENST00000382723 PPP1R2P9O14990 202 aa20.04■□□□□ 0.8
MSX1-201ENST00000382723 SPAG8Q99932 426 aaPredicted RBP20.04■□□□□ 0.8
MSX1-201ENST00000382723 TRAV2A0A0B4J234 112 aa20.04■□□□□ 0.8
MSX1-201ENST00000382723 CD33P20138 364 aa20.04■□□□□ 0.8
MSX1-201ENST00000382723 OSTCQ9NRP0 149 aa20.04■□□□□ 0.8
MSX1-201ENST00000382723 ZNF492Q9P255 531 aa20.04■□□□□ 0.8
MSX1-201ENST00000382723 OR4C46A6NHA9 309 aa20.03■□□□□ 0.8
MSX1-201ENST00000382723 NPIPB6E9PJ23 425 aa20.03■□□□□ 0.8
MSX1-201ENST00000382723 GDF5OSQ5U4N7 250 aa20.03■□□□□ 0.8
MSX1-201ENST00000382723 NUDT10Q8NFP7 164 aa20.03■□□□□ 0.8
MSX1-201ENST00000382723 NUDT11Q96G61 164 aa20.03■□□□□ 0.8
MSX1-201ENST00000382723 BIN3Q9NQY0 253 aa20.03■□□□□ 0.8
MSX1-201ENST00000382723 C3orf56Q8N813 242 aa20.02■□□□□ 0.8
MSX1-201ENST00000382723 SPATA3Q8NHX4 192 aa20.02■□□□□ 0.8
MSX1-201ENST00000382723 ZNF747Q9BV97 191 aa20.02■□□□□ 0.8
MSX1-201ENST00000382723 LINC00477Q96M19 166 aa20.02■□□□□ 0.79
MSX1-201ENST00000382723 V9GYV3 84 aa20.02■□□□□ 0.79
MSX1-201ENST00000382723 CXorf65A6NEN9 183 aa20.01■□□□□ 0.79
MSX1-201ENST00000382723 ZNF705GA8MUZ8 300 aaPredicted RBP20.01■□□□□ 0.79
MSX1-201ENST00000382723 IGLV1-51P01701 117 aa20.01■□□□□ 0.79
MSX1-201ENST00000382723 CT45A10P0DMU9 189 aa20.01■□□□□ 0.79
MSX1-201ENST00000382723 DEFB131AP59861 70 aa20.01■□□□□ 0.79
MSX1-201ENST00000382723 DAZAP1Q96EP5 407 aaKnown RBP20.01■□□□□ 0.79
MSX1-201ENST00000382723 TUBA4BQ9H853 241 aa20.01■□□□□ 0.79
MSX1-201ENST00000382723 ZNF256Q9Y2P7 627 aaPredicted RBP20.01■□□□□ 0.79
MSX1-201ENST00000382723 FAM231DQ6ZW35 169 aa20■□□□□ 0.79
MSX1-201ENST00000382723 CRIP1P50238 77 aa20■□□□□ 0.79
MSX1-201ENST00000382723 C12orf54Q6X4T0 127 aa20■□□□□ 0.79
MSX1-201ENST00000382723 TMEM158Q8WZ71 300 aa20■□□□□ 0.79
MSX1-201ENST00000382723 C19orf71A6NCJ1 209 aa19.99■□□□□ 0.79
MSX1-201ENST00000382723 GATCO43716 136 aaKnown RBP19.99■□□□□ 0.79
MSX1-201ENST00000382723 EBLN2Q6P2I7 272 aa19.99■□□□□ 0.79
MSX1-201ENST00000382723 A0A0J9YX75 114 aa19.98■□□□□ 0.79
MSX1-201ENST00000382723 CA1P00915 261 aaPredicted RBP19.98■□□□□ 0.79
MSX1-201ENST00000382723 SMUG1Q53HV7 270 aa19.98■□□□□ 0.79
MSX1-201ENST00000382723 P01737 135 aa19.98■□□□□ 0.79
MSX1-201ENST00000382723 ZNF80P51504 273 aaPredicted RBP19.98■□□□□ 0.79
MSX1-201ENST00000382723 MAP6D1Q9H9H5 199 aa19.98■□□□□ 0.79
MSX1-201ENST00000382723 PPP1R14DQ9NXH3 145 aa19.98■□□□□ 0.79
MSX1-201ENST00000382723 J3KRW8 73 aa19.97■□□□□ 0.79
MSX1-201ENST00000382723 IGKV3-20P01619 116 aa19.97■□□□□ 0.79
MSX1-201ENST00000382723 COX8CQ7Z4L0 72 aa19.97■□□□□ 0.79
MSX1-201ENST00000382723 ELOBQ15370 118 aa19.96■□□□□ 0.79
MSX1-201ENST00000382723 ZNF124Q15973 351 aa19.96■□□□□ 0.79
MSX1-201ENST00000382723 SAV1Q9H4B6 383 aaPredicted RBP19.96■□□□□ 0.79
MSX1-201ENST00000382723 KNCNA6PVL3 124 aa19.96■□□□□ 0.79
MSX1-201ENST00000382723 SH2D1AO60880 128 aa19.96■□□□□ 0.79
MSX1-201ENST00000382723 S100PP25815 95 aa19.96■□□□□ 0.79
MSX1-201ENST00000382723 FAM3BP58499 235 aaPredicted RBP19.96■□□□□ 0.79
MSX1-201ENST00000382723 FAM162BQ5T6X4 162 aa19.96■□□□□ 0.79
MSX1-201ENST00000382723 FOXI2Q6ZQN5 318 aa19.96■□□□□ 0.79
MSX1-201ENST00000382723 OR4B1Q8NGF8 309 aa19.96■□□□□ 0.79
MSX1-201ENST00000382723 OR2K2Q8NGT1 345 aa19.95■□□□□ 0.78
MSX1-201ENST00000382723 YPEL4Q96NS1 127 aa19.95■□□□□ 0.78
MSX1-201ENST00000382723 IL36BQ9NZH7 164 aa19.95■□□□□ 0.78
MSX1-201ENST00000382723 LENEPQ9Y5L5 61 aa19.95■□□□□ 0.78
MSX1-201ENST00000382723 COLCA2A8K830 154 aa19.94■□□□□ 0.78
MSX1-201ENST00000382723 PFN1P07737 140 aaKnown RBP19.94■□□□□ 0.78
MSX1-201ENST00000382723 ACTL10Q5JWF8 245 aa19.94■□□□□ 0.78
MSX1-201ENST00000382723 APRG1Q8IVJ8 170 aa19.94■□□□□ 0.78
MSX1-201ENST00000382723 RPP21Q9H633 154 aaKnown RBP19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms