RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 PROP1O75360 226 aa9.47□□□□□ -0.89
VPS13A-205ENST00000376636 COL5A3P25940 1745 aaPredicted RBP9.47□□□□□ -0.89
VPS13A-205ENST00000376636 H0YJW9 148 aa9.47□□□□□ -0.89
VPS13A-205ENST00000376636 MSRB2Q9Y3D2 182 aa9.47□□□□□ -0.89
VPS13A-205ENST00000376636 SS18L2Q9UHA2 77 aa9.47□□□□□ -0.89
VPS13A-205ENST00000376636 CRYGCP07315 174 aa9.47□□□□□ -0.89
VPS13A-205ENST00000376636 LGALS9BQ3B8N2 356 aa9.47□□□□□ -0.89
VPS13A-205ENST00000376636 LGALS9CQ6DKI2 356 aa9.47□□□□□ -0.89
VPS13A-205ENST00000376636 H0YIZ8 118 aa9.47□□□□□ -0.89
VPS13A-205ENST00000376636 A0A0A6YYD4 124 aa9.47□□□□□ -0.89
VPS13A-205ENST00000376636 LINC00114Q6XXX2 140 aa9.47□□□□□ -0.89
VPS13A-205ENST00000376636 TMEM200BQ69YZ2 307 aa9.47□□□□□ -0.89
VPS13A-205ENST00000376636 DENND4CQ5VZ89 1909 aa9.47□□□□□ -0.89
VPS13A-205ENST00000376636 SRRM5B3KS81 715 aa9.46□□□□□ -0.89
VPS13A-205ENST00000376636 ZNF883P0CG24 379 aa9.46□□□□□ -0.89
VPS13A-205ENST00000376636 BUB1B-PAK6H3BSN5 160 aa9.46□□□□□ -0.89
VPS13A-205ENST00000376636 K7ERS5 55 aa9.46□□□□□ -0.89
VPS13A-205ENST00000376636 MUSTN1Q8IVN3 82 aa9.46□□□□□ -0.89
VPS13A-205ENST00000376636 UBE2E2Q96LR5 201 aa9.46□□□□□ -0.89
VPS13A-205ENST00000376636 RHPN1-AS1Q9BWJ2 59 aa9.46□□□□□ -0.89
VPS13A-205ENST00000376636 ZNF492Q9P255 531 aa9.46□□□□□ -0.89
VPS13A-205ENST00000376636 B4DSR2 109 aa9.46□□□□□ -0.89
VPS13A-205ENST00000376636 C18orf32Q8TCD1 76 aa9.46□□□□□ -0.89
VPS13A-205ENST00000376636 SDHAF1A6NFY7 115 aa9.46□□□□□ -0.9
VPS13A-205ENST00000376636 IGFBPL1Q8WX77 278 aa9.46□□□□□ -0.9
VPS13A-205ENST00000376636 C4orf51C9J302 202 aa9.46□□□□□ -0.9
VPS13A-205ENST00000376636 SPG11Q96JI7 2443 aa9.46□□□□□ -0.9
VPS13A-205ENST00000376636 SHISA3A0PJX4 238 aa9.46□□□□□ -0.9
VPS13A-205ENST00000376636 BRK1Q8WUW1 75 aa9.46□□□□□ -0.9
VPS13A-205ENST00000376636 CELA3AP09093 270 aa9.45□□□□□ -0.9
VPS13A-205ENST00000376636 SHANK2-AS3Q9BTD1 123 aa9.45□□□□□ -0.9
VPS13A-205ENST00000376636 NMSQ5H8A3 153 aa9.45□□□□□ -0.9
VPS13A-205ENST00000376636 ATP1A1-AS1Q5TC04 95 aa9.45□□□□□ -0.9
VPS13A-205ENST00000376636 IGKV1D-43A0A0B4J1Z2 117 aa9.45□□□□□ -0.9
VPS13A-205ENST00000376636 E9PLN8 166 aa9.45□□□□□ -0.9
VPS13A-205ENST00000376636 NTN3O00634 580 aaPredicted RBP9.45□□□□□ -0.9
VPS13A-205ENST00000376636 PRSS57Q6UWY2 283 aa9.45□□□□□ -0.9
VPS13A-205ENST00000376636 J3QQQ9 107 aa9.44□□□□□ -0.9
VPS13A-205ENST00000376636 DKK1O94907 266 aa9.44□□□□□ -0.9
VPS13A-205ENST00000376636 BAALC-AS2P0C853 105 aa9.44□□□□□ -0.9
VPS13A-205ENST00000376636 HERV-K104P63124 156 aa9.44□□□□□ -0.9
VPS13A-205ENST00000376636 TAX1BP3O14907 124 aa9.44□□□□□ -0.9
VPS13A-205ENST00000376636 NPYP01303 97 aa9.44□□□□□ -0.9
VPS13A-205ENST00000376636 CLPSP04118 112 aa9.44□□□□□ -0.9
VPS13A-205ENST00000376636 PSMB8P28062 276 aa9.44□□□□□ -0.9
VPS13A-205ENST00000376636 SIGLEC9Q9Y336 463 aa9.44□□□□□ -0.9
VPS13A-205ENST00000376636 CDKN1BP46527 198 aa9.44□□□□□ -0.9
VPS13A-205ENST00000376636 EFNA4P52798 201 aa9.44□□□□□ -0.9
VPS13A-205ENST00000376636 DKK4Q9UBT3 224 aa9.44□□□□□ -0.9
VPS13A-205ENST00000376636 PRSS47A8MTI9 375 aa9.43□□□□□ -0.9
VPS13A-205ENST00000376636 H3BUX3 64 aa9.43□□□□□ -0.9
VPS13A-205ENST00000376636 HS3ST6Q96QI5 342 aa9.43□□□□□ -0.9
VPS13A-205ENST00000376636 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP9.43□□□□□ -0.9
VPS13A-205ENST00000376636 IGHV1-18A0A0C4DH31 117 aa9.43□□□□□ -0.9
VPS13A-205ENST00000376636 NXPH4O95158 308 aa9.43□□□□□ -0.9
VPS13A-205ENST00000376636 TIAF1O95411 115 aa9.43□□□□□ -0.9
VPS13A-205ENST00000376636 C9orf106Q8NAJ2 232 aa9.43□□□□□ -0.9
VPS13A-205ENST00000376636 LHFPL1Q86WI0 220 aa9.43□□□□□ -0.9
VPS13A-205ENST00000376636 IGHV1-46P01743 117 aa9.42□□□□□ -0.9
VPS13A-205ENST00000376636 GATA3P23771 443 aa9.42□□□□□ -0.9
VPS13A-205ENST00000376636 C20orf78Q9BR46 151 aa9.42□□□□□ -0.9
VPS13A-205ENST00000376636 VSIG2Q96IQ7 327 aa9.42□□□□□ -0.9
VPS13A-205ENST00000376636 IGKV1-9A0A0C4DH69 117 aa9.42□□□□□ -0.9
VPS13A-205ENST00000376636 SMIM27A0A1W2PRY6 76 aa9.42□□□□□ -0.9
VPS13A-205ENST00000376636 ANGP03950 147 aaKnown RBP9.42□□□□□ -0.9
VPS13A-205ENST00000376636 ATP5G1P05496 136 aa9.42□□□□□ -0.9
VPS13A-205ENST00000376636 TMEM178BH3BS89 294 aa9.42□□□□□ -0.9
VPS13A-205ENST00000376636 FAM236AA0A1B0GUQ0 79 aa9.42□□□□□ -0.9
VPS13A-205ENST00000376636 FAM236BA0A1B0GV22 79 aa9.42□□□□□ -0.9
VPS13A-205ENST00000376636 PSPNO60542 156 aa9.42□□□□□ -0.9
VPS13A-205ENST00000376636 NPSP0C0P6 89 aa9.42□□□□□ -0.9
VPS13A-205ENST00000376636 SLC25A29Q8N8R3 303 aa9.42□□□□□ -0.9
VPS13A-205ENST00000376636 TRBV6-6A0A0A6YYG2 114 aa9.42□□□□□ -0.9
VPS13A-205ENST00000376636 LYZL4Q96KX0 146 aa9.42□□□□□ -0.9
VPS13A-205ENST00000376636 PRR14LQ5THK1 2151 aa9.42□□□□□ -0.9
VPS13A-205ENST00000376636 FNDC1Q4ZHG4 1894 aaPredicted RBP9.42□□□□□ -0.9
VPS13A-205ENST00000376636 CSRP2Q16527 193 aa9.41□□□□□ -0.9
VPS13A-205ENST00000376636 ZFP2Q6ZN57 461 aa9.41□□□□□ -0.9
VPS13A-205ENST00000376636 MCRIP2Q9BUT9 160 aaKnown RBP9.41□□□□□ -0.9
VPS13A-205ENST00000376636 LAIR2Q6ISS4 152 aa9.41□□□□□ -0.9
VPS13A-205ENST00000376636 IGLV3-32A0A0A0MS00 114 aa9.41□□□□□ -0.9
VPS13A-205ENST00000376636 LINC00527Q9UJ94 153 aa9.41□□□□□ -0.9
VPS13A-205ENST00000376636 K7ERJ3 54 aa9.41□□□□□ -0.9
VPS13A-205ENST00000376636 DEFB105AQ8NG35 78 aa9.41□□□□□ -0.9
VPS13A-205ENST00000376636 REG4Q9BYZ8 158 aa9.41□□□□□ -0.9
VPS13A-205ENST00000376636 ZNF493Q6ZR52 646 aa9.41□□□□□ -0.9
VPS13A-205ENST00000376636 Q6ZVH6 145 aa9.41□□□□□ -0.9
VPS13A-205ENST00000376636 MESP1Q9BRJ9 268 aa9.41□□□□□ -0.9
VPS13A-205ENST00000376636 CYTL1Q9NRR1 136 aa9.41□□□□□ -0.9
VPS13A-205ENST00000376636 H0YGX0 51 aa9.41□□□□□ -0.9
VPS13A-205ENST00000376636 IGHV2-70P01814 119 aa9.41□□□□□ -0.9
VPS13A-205ENST00000376636 J3QRE1 110 aa9.41□□□□□ -0.9
VPS13A-205ENST00000376636 NTF4P34130 210 aa9.41□□□□□ -0.9
VPS13A-205ENST00000376636 ZNF134P52741 427 aa9.41□□□□□ -0.9
VPS13A-205ENST00000376636 E9PQ18 207 aa9.41□□□□□ -0.9
VPS13A-205ENST00000376636 A0A0B4J2C4 111 aa9.41□□□□□ -0.9
VPS13A-205ENST00000376636 C3orf56Q8N813 242 aa9.41□□□□□ -0.9
VPS13A-205ENST00000376636 LINC01356Q8N9X3 169 aa9.4□□□□□ -0.9
VPS13A-205ENST00000376636 C2orf16Q68DN1 1984 aa9.4□□□□□ -0.9
VPS13A-205ENST00000376636 C9JQL5 133 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms