RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 TAL2Q16559 108 aa10.98□□□□□ -0.65
COL4A1-201ENST00000375820 LYPD1Q8N2G4 141 aa10.98□□□□□ -0.65
COL4A1-201ENST00000375820 MRPL51Q4U2R6 128 aaKnown RBP10.98□□□□□ -0.65
COL4A1-201ENST00000375820 IGKV1OR2-108A0A075B7D4 117 aa10.98□□□□□ -0.65
COL4A1-201ENST00000375820 A0A1B0GW64 132 aa10.98□□□□□ -0.65
COL4A1-201ENST00000375820 TMEM75Q8N9X5 138 aa10.98□□□□□ -0.65
COL4A1-201ENST00000375820 DOCK9Q9BZ29 2069 aa10.98□□□□□ -0.65
COL4A1-201ENST00000375820 IGHV1-69DA0A0B4J2H0 117 aa10.98□□□□□ -0.65
COL4A1-201ENST00000375820 IGHV1-69P01742 117 aa10.98□□□□□ -0.65
COL4A1-201ENST00000375820 ARTNQ5T4W7 220 aa10.98□□□□□ -0.65
COL4A1-201ENST00000375820 MRPL27Q9P0M9 148 aaKnown RBP10.98□□□□□ -0.65
COL4A1-201ENST00000375820 MST1LQ2TV78 715 aa10.97□□□□□ -0.65
COL4A1-201ENST00000375820 SDHAF1A6NFY7 115 aa10.97□□□□□ -0.65
COL4A1-201ENST00000375820 A0A0G2JMZ2 1700 aa10.97□□□□□ -0.65
COL4A1-201ENST00000375820 LRRC37A2A6NM11 1700 aa10.97□□□□□ -0.65
COL4A1-201ENST00000375820 ADAMTS7Q9UKP4 1686 aa10.97□□□□□ -0.65
COL4A1-201ENST00000375820 IGHG3P01860 377 aa10.97□□□□□ -0.65
COL4A1-201ENST00000375820 FGF6P10767 208 aa10.97□□□□□ -0.65
COL4A1-201ENST00000375820 CR1LQ2VPA4 569 aa10.97□□□□□ -0.65
COL4A1-201ENST00000375820 LINC01559Q495D7 138 aa10.97□□□□□ -0.65
COL4A1-201ENST00000375820 PTPRDP23468 1912 aa10.97□□□□□ -0.65
COL4A1-201ENST00000375820 IGHV1OR15-1A0A075B7D0 117 aa10.97□□□□□ -0.65
COL4A1-201ENST00000375820 WISP1O95388 367 aa10.97□□□□□ -0.65
COL4A1-201ENST00000375820 VWC2Q2TAL6 325 aa10.97□□□□□ -0.65
COL4A1-201ENST00000375820 TMEM243Q9BU79 118 aa10.97□□□□□ -0.65
COL4A1-201ENST00000375820 RSPO3Q9BXY4 272 aaPredicted RBP10.96□□□□□ -0.65
COL4A1-201ENST00000375820 COL6A6A6NMZ7 2263 aa10.96□□□□□ -0.65
COL4A1-201ENST00000375820 XCL1P47992 114 aa10.96□□□□□ -0.65
COL4A1-201ENST00000375820 CLPSL1A2RUU4 121 aa10.96□□□□□ -0.65
COL4A1-201ENST00000375820 F6UB75 175 aa10.96□□□□□ -0.65
COL4A1-201ENST00000375820 C18orf32Q8TCD1 76 aa10.96□□□□□ -0.66
COL4A1-201ENST00000375820 DOCK11Q5JSL3 2073 aa10.96□□□□□ -0.66
COL4A1-201ENST00000375820 CRYGCP07315 174 aa10.96□□□□□ -0.66
COL4A1-201ENST00000375820 HLA-DMBP28068 263 aa10.96□□□□□ -0.66
COL4A1-201ENST00000375820 SRSF8Q9BRL6 282 aaKnown RBP10.96□□□□□ -0.66
COL4A1-201ENST00000375820 UBE2E1P51965 193 aa10.95□□□□□ -0.66
COL4A1-201ENST00000375820 SLAQ13239 276 aa10.95□□□□□ -0.66
COL4A1-201ENST00000375820 DEFB136Q30KP8 78 aa10.95□□□□□ -0.66
COL4A1-201ENST00000375820 TSSC4Q9Y5U2 329 aaPredicted RBP10.95□□□□□ -0.66
COL4A1-201ENST00000375820 IGKV2D-24A0A075B6R9 120 aa10.95□□□□□ -0.66
COL4A1-201ENST00000375820 Q6ZS92 163 aa10.95□□□□□ -0.66
COL4A1-201ENST00000375820 IGHV1-24A0A0C4DH33 117 aa10.95□□□□□ -0.66
COL4A1-201ENST00000375820 SPTBN1Q01082 2364 aaKnown RBP10.95□□□□□ -0.66
COL4A1-201ENST00000375820 PRSS46E5RG02 174 aa10.94□□□□□ -0.66
COL4A1-201ENST00000375820 FAM104BQ5XKR9 115 aa10.94□□□□□ -0.66
COL4A1-201ENST00000375820 SPTBN2O15020 2390 aa10.94□□□□□ -0.66
COL4A1-201ENST00000375820 Q8N8P6 123 aa10.94□□□□□ -0.66
COL4A1-201ENST00000375820 NOP10Q9NPE3 64 aaKnown RBP10.94□□□□□ -0.66
COL4A1-201ENST00000375820 LY96Q9Y6Y9 160 aa10.94□□□□□ -0.66
COL4A1-201ENST00000375820 EP300Q09472 2414 aaPredicted RBP10.94□□□□□ -0.66
COL4A1-201ENST00000375820 TRBV19A0A075B6N1 114 aa10.94□□□□□ -0.66
COL4A1-201ENST00000375820 IGHV4-28A0A0C4DH34 117 aa10.94□□□□□ -0.66
COL4A1-201ENST00000375820 ZNF503-AS2A6NEH8 195 aa10.94□□□□□ -0.66
COL4A1-201ENST00000375820 C17orf77Q96MU5 243 aa10.93□□□□□ -0.66
COL4A1-201ENST00000375820 DSCR8Q96T75 97 aa10.93□□□□□ -0.66
COL4A1-201ENST00000375820 TRBV6-6A0A0A6YYG2 114 aa10.93□□□□□ -0.66
COL4A1-201ENST00000375820 UBE2BP63146 152 aa10.93□□□□□ -0.66
COL4A1-201ENST00000375820 GFRA4Q9GZZ7 299 aa10.93□□□□□ -0.66
COL4A1-201ENST00000375820 NDUFA4L2Q9NRX3 87 aa10.93□□□□□ -0.66
COL4A1-201ENST00000375820 NDUFA12Q9UI09 145 aa10.93□□□□□ -0.66
COL4A1-201ENST00000375820 GVINP1Q7Z2Y8 2422 aa10.93□□□□□ -0.66
COL4A1-201ENST00000375820 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.93□□□□□ -0.66
COL4A1-201ENST00000375820 IGHV2-70DA0A0C4DH43 119 aa10.93□□□□□ -0.66
COL4A1-201ENST00000375820 IGKV2-29A2NJV5 120 aaPredicted RBP10.93□□□□□ -0.66
COL4A1-201ENST00000375820 CDKN1BP46527 198 aa10.93□□□□□ -0.66
COL4A1-201ENST00000375820 Q6ZR03 302 aa10.93□□□□□ -0.66
COL4A1-201ENST00000375820 C17orf58Q2M2W7 97 aa10.93□□□□□ -0.66
COL4A1-201ENST00000375820 TMEM14BQ9NUH8 114 aa10.93□□□□□ -0.66
COL4A1-201ENST00000375820 ZC2HC1AQ96GY0 325 aa10.92□□□□□ -0.66
COL4A1-201ENST00000375820 C22orf46C9J442 243 aa10.92□□□□□ -0.66
COL4A1-201ENST00000375820 GNRH2O43555 120 aa10.92□□□□□ -0.66
COL4A1-201ENST00000375820 WDR86Q86TI4 376 aa10.92□□□□□ -0.66
COL4A1-201ENST00000375820 TMEM141Q96I45 108 aa10.92□□□□□ -0.66
COL4A1-201ENST00000375820 CITED1Q99966 193 aa10.92□□□□□ -0.66
COL4A1-201ENST00000375820 MRPL35Q9NZE8 188 aaKnown RBP10.92□□□□□ -0.66
COL4A1-201ENST00000375820 IGHG4P01861 327 aa10.92□□□□□ -0.66
COL4A1-201ENST00000375820 ESM1Q9NQ30 184 aa10.92□□□□□ -0.66
COL4A1-201ENST00000375820 NPYP01303 97 aa10.92□□□□□ -0.66
COL4A1-201ENST00000375820 ZNF726P1Q15940 193 aa10.92□□□□□ -0.66
COL4A1-201ENST00000375820 RPL18AQ02543 176 aaKnown RBP10.91□□□□□ -0.66
COL4A1-201ENST00000375820 SIPA1L1O43166 1804 aa10.91□□□□□ -0.66
COL4A1-201ENST00000375820 UBL5Q9BZL1 73 aa10.91□□□□□ -0.66
COL4A1-201ENST00000375820 PDE6HQ13956 83 aa10.91□□□□□ -0.66
COL4A1-201ENST00000375820 CARD19Q96LW7 228 aa10.91□□□□□ -0.66
COL4A1-201ENST00000375820 SIGLEC8Q9NYZ4 499 aa10.91□□□□□ -0.66
COL4A1-201ENST00000375820 KLF2Q9Y5W3 355 aaPredicted RBP10.91□□□□□ -0.66
COL4A1-201ENST00000375820 APOC4P55056 127 aa10.91□□□□□ -0.66
COL4A1-201ENST00000375820 APRG1Q8IVJ8 170 aa10.91□□□□□ -0.66
COL4A1-201ENST00000375820 ABCA4P78363 2273 aa10.91□□□□□ -0.66
COL4A1-201ENST00000375820 ETDBQ3ZM63 59 aa10.91□□□□□ -0.66
COL4A1-201ENST00000375820 ZNF833PQ6ZTB9 187 aa10.9□□□□□ -0.66
COL4A1-201ENST00000375820 CRIPAKQ8N1N5 446 aa10.9□□□□□ -0.66
COL4A1-201ENST00000375820 C17orf82Q86X59 251 aaPredicted RBP10.9□□□□□ -0.66
COL4A1-201ENST00000375820 AMTNQ6UX39 209 aa10.9□□□□□ -0.66
COL4A1-201ENST00000375820 Q6ZWC4 215 aa10.9□□□□□ -0.66
COL4A1-201ENST00000375820 DKK2Q9UBU2 259 aa10.9□□□□□ -0.66
COL4A1-201ENST00000375820 ABCA1O95477 2261 aa10.9□□□□□ -0.67
COL4A1-201ENST00000375820 NDUFS7O75251 213 aa10.9□□□□□ -0.67
COL4A1-201ENST00000375820 C5orf47Q569G3 176 aa10.9□□□□□ -0.67
COL4A1-201ENST00000375820 PRR25Q96S07 402 aa10.9□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms