RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 TIMM17BO60830 172 aa7.03□□□□□ -1.28
SYNE1-206ENST00000367253 SAA4P35542 130 aa7.03□□□□□ -1.28
SYNE1-206ENST00000367253 TFF3Q07654 80 aa7.03□□□□□ -1.28
SYNE1-206ENST00000367253 PSG7Q13046 419 aa7.03□□□□□ -1.28
SYNE1-206ENST00000367253 RNF152Q8N8N0 203 aa7.03□□□□□ -1.28
SYNE1-206ENST00000367253 DAZ1Q9NQZ3 744 aaKnown RBP7.03□□□□□ -1.28
SYNE1-206ENST00000367253 NOTCH3Q9UM47 2321 aa7.03□□□□□ -1.28
SYNE1-206ENST00000367253 LINC00158P58513 81 aa7.03□□□□□ -1.28
SYNE1-206ENST00000367253 DEFB125Q8N687 156 aa7.03□□□□□ -1.28
SYNE1-206ENST00000367253 NLRC5Q86WI3 1866 aa7.03□□□□□ -1.28
SYNE1-206ENST00000367253 TMEM14DPA8MWL7 114 aa7.02□□□□□ -1.28
SYNE1-206ENST00000367253 CD28P10747 220 aa7.02□□□□□ -1.28
SYNE1-206ENST00000367253 CCL1P22362 96 aa7.02□□□□□ -1.28
SYNE1-206ENST00000367253 RPL15P61313 204 aaKnown RBP7.02□□□□□ -1.28
SYNE1-206ENST00000367253 CCL24O00175 119 aa7.02□□□□□ -1.29
SYNE1-206ENST00000367253 HRKO00198 91 aa7.02□□□□□ -1.29
SYNE1-206ENST00000367253 IGLC1P0CG04 106 aa7.02□□□□□ -1.29
SYNE1-206ENST00000367253 WT1P19544 449 aaPredicted RBP7.02□□□□□ -1.29
SYNE1-206ENST00000367253 MST1P26927 711 aa7.02□□□□□ -1.29
SYNE1-206ENST00000367253 GPHB5Q86YW7 130 aa7.02□□□□□ -1.29
SYNE1-206ENST00000367253 IGHV2-26A0A0B4J1V2 119 aa7.02□□□□□ -1.29
SYNE1-206ENST00000367253 CCDC179H3BU77 68 aa7.02□□□□□ -1.29
SYNE1-206ENST00000367253 IGHV3-48P01763 117 aa7.02□□□□□ -1.29
SYNE1-206ENST00000367253 HAMPP81172 84 aa7.02□□□□□ -1.29
SYNE1-206ENST00000367253 Q6ZUT4 128 aa7.02□□□□□ -1.29
SYNE1-206ENST00000367253 C9orf139Q6ZV77 190 aa7.02□□□□□ -1.29
SYNE1-206ENST00000367253 Q9H3A6 140 aa7.02□□□□□ -1.29
SYNE1-206ENST00000367253 OTORQ9NRC9 128 aa7.02□□□□□ -1.29
SYNE1-206ENST00000367253 MIR17HGQ75NE6 70 aa7.02□□□□□ -1.29
SYNE1-206ENST00000367253 C20orf78Q9BR46 151 aa7.02□□□□□ -1.29
SYNE1-206ENST00000367253 PAX4O43316 350 aa7.01□□□□□ -1.29
SYNE1-206ENST00000367253 NDUFA7O95182 113 aa7.01□□□□□ -1.29
SYNE1-206ENST00000367253 ZAR1Q86SH2 424 aa7.01□□□□□ -1.29
SYNE1-206ENST00000367253 ODF3L1Q8IXM7 274 aa7.01□□□□□ -1.29
SYNE1-206ENST00000367253 DYSFO75923 2080 aa7.01□□□□□ -1.29
SYNE1-206ENST00000367253 SPG11Q96JI7 2443 aa7.01□□□□□ -1.29
SYNE1-206ENST00000367253 SOCS3O14543 225 aa7.01□□□□□ -1.29
SYNE1-206ENST00000367253 NANOS2P60321 138 aaKnown RBP7.01□□□□□ -1.29
SYNE1-206ENST00000367253 LOXL1Q08397 574 aaPredicted RBP7.01□□□□□ -1.29
SYNE1-206ENST00000367253 EFNB3Q15768 340 aa7.01□□□□□ -1.29
SYNE1-206ENST00000367253 ZNF329Q86UD4 541 aa7.01□□□□□ -1.29
SYNE1-206ENST00000367253 OCC1Q8TAD7 63 aa7.01□□□□□ -1.29
SYNE1-206ENST00000367253 LINC00527Q9UJ94 153 aa7.01□□□□□ -1.29
SYNE1-206ENST00000367253 VSIRQ9H7M9 311 aa7.01□□□□□ -1.29
SYNE1-206ENST00000367253 TRAV12-1A0A0B4J245 112 aa7.01□□□□□ -1.29
SYNE1-206ENST00000367253 PFN1P07737 140 aaKnown RBP7.01□□□□□ -1.29
SYNE1-206ENST00000367253 EGR4Q05215 589 aa7.01□□□□□ -1.29
SYNE1-206ENST00000367253 ZNF493Q6ZR52 646 aa7.01□□□□□ -1.29
SYNE1-206ENST00000367253 TMEM52Q8NDY8 209 aa7.01□□□□□ -1.29
SYNE1-206ENST00000367253 KIR2DL5BQ8NHK3 375 aa7.01□□□□□ -1.29
SYNE1-206ENST00000367253 NRGNQ92686 78 aa7.01□□□□□ -1.29
SYNE1-206ENST00000367253 AMELYQ99218 206 aa7.01□□□□□ -1.29
SYNE1-206ENST00000367253 ANAPC10Q9UM13 185 aa7.01□□□□□ -1.29
SYNE1-206ENST00000367253 CACNA1IQ9P0X4 2223 aa7.01□□□□□ -1.29
SYNE1-206ENST00000367253 COL4A6Q14031 1691 aa7□□□□□ -1.29
SYNE1-206ENST00000367253 hADV29S1A0JD25 119 aa7□□□□□ -1.29
SYNE1-206ENST00000367253 WIPF3A6NGB9 483 aa7□□□□□ -1.29
SYNE1-206ENST00000367253 D6R8Y8 96 aa7□□□□□ -1.29
SYNE1-206ENST00000367253 MUSTN1Q8IVN3 82 aa7□□□□□ -1.29
SYNE1-206ENST00000367253 WFDC9Q8NEX5 89 aa7□□□□□ -1.29
SYNE1-206ENST00000367253 C7orf33Q8WU49 177 aa7□□□□□ -1.29
SYNE1-206ENST00000367253 ZNF462Q96JM2 2506 aa7□□□□□ -1.29
SYNE1-206ENST00000367253 IGLC7A0M8Q6 106 aa7□□□□□ -1.29
SYNE1-206ENST00000367253 IGHV3-23P01764 117 aa7□□□□□ -1.29
SYNE1-206ENST00000367253 LAGE3Q14657 143 aa7□□□□□ -1.29
SYNE1-206ENST00000367253 ARTNQ5T4W7 220 aa7□□□□□ -1.29
SYNE1-206ENST00000367253 RPRMLQ8N4K4 120 aa7□□□□□ -1.29
SYNE1-206ENST00000367253 ZC2HC1AQ96GY0 325 aa7□□□□□ -1.29
SYNE1-206ENST00000367253 UBL5Q9BZL1 73 aa7□□□□□ -1.29
SYNE1-206ENST00000367253 MTCL1Q9Y4B5 1905 aaKnown RBP7□□□□□ -1.29
SYNE1-206ENST00000367253 SYS1-DBNDD2H3BUS1 97 aa7□□□□□ -1.29
SYNE1-206ENST00000367253 IGLC6P0CF74 106 aa7□□□□□ -1.29
SYNE1-206ENST00000367253 NFE4Q86UQ8 179 aa7□□□□□ -1.29
SYNE1-206ENST00000367253 FANCD2OSQ96PS1 177 aa7□□□□□ -1.29
SYNE1-206ENST00000367253 MRPL27Q9P0M9 148 aaKnown RBP7□□□□□ -1.29
SYNE1-206ENST00000367253 IGHV3-64A0A075B6Q5 118 aa6.99□□□□□ -1.29
SYNE1-206ENST00000367253 F2Z2F3 143 aa6.99□□□□□ -1.29
SYNE1-206ENST00000367253 ZFP36P26651 326 aaKnown RBP6.99□□□□□ -1.29
SYNE1-206ENST00000367253 NTF4P34130 210 aa6.99□□□□□ -1.29
SYNE1-206ENST00000367253 FUSP35637 526 aaKnown RBP eCLIP6.99□□□□□ -1.29
SYNE1-206ENST00000367253 MORN5Q5VZ52 161 aa6.99□□□□□ -1.29
SYNE1-206ENST00000367253 SLC25A48Q6ZT89 311 aaKnown RBP6.99□□□□□ -1.29
SYNE1-206ENST00000367253 GLMPQ8WWB7 406 aa6.99□□□□□ -1.29
SYNE1-206ENST00000367253 WFDC6Q9BQY6 131 aa6.99□□□□□ -1.29
SYNE1-206ENST00000367253 IGKV1D-42A0A075B6H8 117 aa6.99□□□□□ -1.29
SYNE1-206ENST00000367253 IGHV3-66A0A0C4DH42 116 aa6.99□□□□□ -1.29
SYNE1-206ENST00000367253 E7EQL1 145 aa6.99□□□□□ -1.29
SYNE1-206ENST00000367253 F8W735 103 aaPredicted RBP6.99□□□□□ -1.29
SYNE1-206ENST00000367253 IGLL1P15814 213 aa6.99□□□□□ -1.29
SYNE1-206ENST00000367253 DEFB131AP59861 70 aa6.99□□□□□ -1.29
SYNE1-206ENST00000367253 IGLV1-36A0A0B4J1U3 117 aa6.99□□□□□ -1.29
SYNE1-206ENST00000367253 IGHG2P01859 326 aa6.99□□□□□ -1.29
SYNE1-206ENST00000367253 KIR2DL5BA0A0G2JN68 375 aa6.99□□□□□ -1.29
SYNE1-206ENST00000367253 KIR2DL5BA0A0G2JPC4 375 aa6.99□□□□□ -1.29
SYNE1-206ENST00000367253 EFNA2O43921 213 aa6.99□□□□□ -1.29
SYNE1-206ENST00000367253 ATP5G1P05496 136 aa6.99□□□□□ -1.29
SYNE1-206ENST00000367253 FGF6P10767 208 aa6.99□□□□□ -1.29
SYNE1-206ENST00000367253 FOXI1Q12951 378 aa6.99□□□□□ -1.29
SYNE1-206ENST00000367253 ZC2HC1BQ5TFG8 222 aa6.99□□□□□ -1.29
SYNE1-206ENST00000367253 KIR2DL5AQ8N109 375 aa6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms