RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 C14orf132Q9NPU4 83 aa8.19□□□□□ -1.1
CLIP1-202ENST00000358808 NDUFA12Q9UI09 145 aa8.19□□□□□ -1.1
CLIP1-202ENST00000358808 TMEM213A2RRL7 107 aa8.19□□□□□ -1.1
CLIP1-202ENST00000358808 PFN1P07737 140 aaKnown RBP8.19□□□□□ -1.1
CLIP1-202ENST00000358808 NOP10Q9NPE3 64 aaKnown RBP8.19□□□□□ -1.1
CLIP1-202ENST00000358808 COL4A6Q14031 1691 aa8.19□□□□□ -1.1
CLIP1-202ENST00000358808 NBASA2RRP1 2371 aa8.19□□□□□ -1.1
CLIP1-202ENST00000358808 J3QLI3 93 aa8.19□□□□□ -1.1
CLIP1-202ENST00000358808 IGKV1D-12P01611 117 aa8.19□□□□□ -1.1
CLIP1-202ENST00000358808 FUSP35637 526 aaKnown RBP eCLIP8.19□□□□□ -1.1
CLIP1-202ENST00000358808 HERVK_113P63121 156 aa8.19□□□□□ -1.1
CLIP1-202ENST00000358808 GGNQ86UU5 652 aa8.19□□□□□ -1.1
CLIP1-202ENST00000358808 STPG4Q8N801 248 aa8.19□□□□□ -1.1
CLIP1-202ENST00000358808 IGKV1D-8A0A087WSZ0 117 aa8.18□□□□□ -1.1
CLIP1-202ENST00000358808 TRAV26-2A0A0B4J265 109 aa8.18□□□□□ -1.1
CLIP1-202ENST00000358808 F8W735 103 aaPredicted RBP8.18□□□□□ -1.1
CLIP1-202ENST00000358808 G3V318 75 aa8.18□□□□□ -1.1
CLIP1-202ENST00000358808 RNASE13Q5GAN3 156 aaKnown RBP8.18□□□□□ -1.1
CLIP1-202ENST00000358808 MPDZO75970 2070 aa8.18□□□□□ -1.1
CLIP1-202ENST00000358808 SDHAF1A6NFY7 115 aa8.18□□□□□ -1.1
CLIP1-202ENST00000358808 SHISA9B4DS77 424 aa8.18□□□□□ -1.1
CLIP1-202ENST00000358808 A0A1B0GUS0 222 aa8.18□□□□□ -1.1
CLIP1-202ENST00000358808 RHOHQ15669 191 aa8.18□□□□□ -1.1
CLIP1-202ENST00000358808 FANCD2OSQ96PS1 177 aa8.18□□□□□ -1.1
CLIP1-202ENST00000358808 SRSF8Q9BRL6 282 aaKnown RBP8.18□□□□□ -1.1
CLIP1-202ENST00000358808 IGKV1-12A0A0C4DH73 117 aa8.18□□□□□ -1.1
CLIP1-202ENST00000358808 GFI1Q99684 422 aa8.18□□□□□ -1.1
CLIP1-202ENST00000358808 RS1O15537 224 aa8.18□□□□□ -1.1
CLIP1-202ENST00000358808 IGHV3-30P01768 117 aa8.18□□□□□ -1.1
CLIP1-202ENST00000358808 IGHV3-33P01772 117 aa8.18□□□□□ -1.1
CLIP1-202ENST00000358808 C3orf79P0CE67 100 aa8.18□□□□□ -1.1
CLIP1-202ENST00000358808 IGHV3-30-3P0DP02 117 aa8.18□□□□□ -1.1
CLIP1-202ENST00000358808 IGHV3-30-5P0DP03 117 aa8.18□□□□□ -1.1
CLIP1-202ENST00000358808 FGF6P10767 208 aa8.18□□□□□ -1.1
CLIP1-202ENST00000358808 CRYGSP22914 178 aa8.18□□□□□ -1.1
CLIP1-202ENST00000358808 NTF4P34130 210 aa8.18□□□□□ -1.1
CLIP1-202ENST00000358808 HGFACQ04756 655 aa8.18□□□□□ -1.1
CLIP1-202ENST00000358808 PRR30Q53SZ7 412 aaPredicted RBP8.18□□□□□ -1.1
CLIP1-202ENST00000358808 Q6ZS92 163 aa8.18□□□□□ -1.1
CLIP1-202ENST00000358808 HIST3H2BBQ8N257 126 aa8.18□□□□□ -1.1
CLIP1-202ENST00000358808 TMEM75Q8N9X5 138 aa8.18□□□□□ -1.1
CLIP1-202ENST00000358808 CFHR4Q92496 578 aa8.18□□□□□ -1.1
CLIP1-202ENST00000358808 NDUFB8O95169 186 aa8.17□□□□□ -1.1
CLIP1-202ENST00000358808 IGHV2-70DA0A0C4DH43 119 aa8.17□□□□□ -1.1
CLIP1-202ENST00000358808 LINC01551Q86U37 167 aa8.17□□□□□ -1.1
CLIP1-202ENST00000358808 CARD19Q96LW7 228 aa8.17□□□□□ -1.1
CLIP1-202ENST00000358808 CAMK2N2Q96S95 79 aa8.17□□□□□ -1.1
CLIP1-202ENST00000358808 TSSC4Q9Y5U2 329 aaPredicted RBP8.17□□□□□ -1.1
CLIP1-202ENST00000358808 THADAQ6YHU6 1953 aa8.17□□□□□ -1.1
CLIP1-202ENST00000358808 PRSS33Q8NF86 280 aa8.17□□□□□ -1.1
CLIP1-202ENST00000358808 CHD5Q8TDI0 1954 aa8.17□□□□□ -1.1
CLIP1-202ENST00000358808 PDE6HQ13956 83 aa8.17□□□□□ -1.1
CLIP1-202ENST00000358808 C8orf86Q6ZUL3 223 aa8.17□□□□□ -1.1
CLIP1-202ENST00000358808 Q8N8P6 123 aa8.17□□□□□ -1.1
CLIP1-202ENST00000358808 LINC00473A8K010 186 aa8.16□□□□□ -1.1
CLIP1-202ENST00000358808 MPZP25189 248 aa8.16□□□□□ -1.1
CLIP1-202ENST00000358808 IGKV1D-17A0A075B6S4 117 aa8.16□□□□□ -1.1
CLIP1-202ENST00000358808 MLANAQ16655 118 aa8.16□□□□□ -1.1
CLIP1-202ENST00000358808 C9orf47Q6ZRZ4 202 aa8.16□□□□□ -1.1
CLIP1-202ENST00000358808 ABCA7Q8IZY2 2146 aa8.16□□□□□ -1.1
CLIP1-202ENST00000358808 MST1P26927 711 aa8.16□□□□□ -1.1
CLIP1-202ENST00000358808 GFRA4Q9GZZ7 299 aa8.16□□□□□ -1.1
CLIP1-202ENST00000358808 FREM3P0C091 2139 aa8.16□□□□□ -1.1
CLIP1-202ENST00000358808 C9orf66Q5T8R8 295 aa8.16□□□□□ -1.1
CLIP1-202ENST00000358808 BOD1L2Q8IYS8 172 aa8.16□□□□□ -1.1
CLIP1-202ENST00000358808 NDUFS6O75380 124 aaKnown RBP8.16□□□□□ -1.1
CLIP1-202ENST00000358808 NMSQ5H8A3 153 aa8.16□□□□□ -1.1
CLIP1-202ENST00000358808 KLK5Q9Y337 293 aaPredicted RBP8.16□□□□□ -1.1
CLIP1-202ENST00000358808 TRBV20-1A0A075B6N2 111 aa8.15□□□□□ -1.1
CLIP1-202ENST00000358808 NDUFA4O00483 81 aa8.15□□□□□ -1.1
CLIP1-202ENST00000358808 MP68P56378 58 aa8.15□□□□□ -1.1
CLIP1-202ENST00000358808 PIFOQ8TCI5 191 aa8.15□□□□□ -1.1
CLIP1-202ENST00000358808 ICOSQ9Y6W8 199 aa8.15□□□□□ -1.1
CLIP1-202ENST00000358808 ANK1P16157 1881 aa8.15□□□□□ -1.1
CLIP1-202ENST00000358808 IGHG2P01859 326 aa8.15□□□□□ -1.1
CLIP1-202ENST00000358808 REG4Q9BYZ8 158 aa8.15□□□□□ -1.1
CLIP1-202ENST00000358808 CACNA1HO95180 2353 aa8.15□□□□□ -1.1
CLIP1-202ENST00000358808 LINC00205P59089 165 aa8.15□□□□□ -1.1
CLIP1-202ENST00000358808 ORMDL1Q9P0S3 153 aa8.15□□□□□ -1.1
CLIP1-202ENST00000358808 PRSS46E5RG02 174 aa8.15□□□□□ -1.11
CLIP1-202ENST00000358808 MRPL27Q9P0M9 148 aaKnown RBP8.15□□□□□ -1.11
CLIP1-202ENST00000358808 TP53BP1Q12888 1972 aaPredicted RBP8.15□□□□□ -1.11
CLIP1-202ENST00000358808 C17orf82Q86X59 251 aaPredicted RBP8.14□□□□□ -1.11
CLIP1-202ENST00000358808 IGKV1-27A0A075B6S5 117 aa8.14□□□□□ -1.11
CLIP1-202ENST00000358808 ZNF134P52741 427 aa8.14□□□□□ -1.11
CLIP1-202ENST00000358808 SVIPQ8NHG7 77 aa8.14□□□□□ -1.11
CLIP1-202ENST00000358808 PLXNA3P51805 1871 aa8.14□□□□□ -1.11
CLIP1-202ENST00000358808 J3QRE1 110 aa8.14□□□□□ -1.11
CLIP1-202ENST00000358808 IFITM1P13164 125 aa8.14□□□□□ -1.11
CLIP1-202ENST00000358808 LY96Q9Y6Y9 160 aa8.14□□□□□ -1.11
CLIP1-202ENST00000358808 TEX36Q5VZQ5 186 aa8.14□□□□□ -1.11
CLIP1-202ENST00000358808 CYTL1Q9NRR1 136 aa8.14□□□□□ -1.11
CLIP1-202ENST00000358808 MRPL36Q9P0J6 103 aaKnown RBP8.14□□□□□ -1.11
CLIP1-202ENST00000358808 ZNRD1Q9P1U0 126 aa8.14□□□□□ -1.11
CLIP1-202ENST00000358808 RIF1Q5UIP0 2472 aaKnown RBP8.14□□□□□ -1.11
CLIP1-202ENST00000358808 CRYBA4P53673 196 aa8.14□□□□□ -1.11
CLIP1-202ENST00000358808 PYY3Q5JQD4 70 aa8.14□□□□□ -1.11
CLIP1-202ENST00000358808 TRBV24-1A0A075B6N3 115 aa8.13□□□□□ -1.11
CLIP1-202ENST00000358808 IGKV1-16P04430 117 aa8.13□□□□□ -1.11
CLIP1-202ENST00000358808 FAM104BQ5XKR9 115 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms