RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 ZNRF1Q8ND25 227 aa10.26□□□□□ -0.77
COL6A3-203ENST00000353578 SRXN1Q9BYN0 137 aa10.26□□□□□ -0.77
COL6A3-203ENST00000353578 MRPL35Q9NZE8 188 aaKnown RBP10.26□□□□□ -0.77
COL6A3-203ENST00000353578 THBDP07204 575 aa10.25□□□□□ -0.77
COL6A3-203ENST00000353578 MRPL51Q4U2R6 128 aaKnown RBP10.25□□□□□ -0.77
COL6A3-203ENST00000353578 CHCHD5Q9BSY4 110 aa10.25□□□□□ -0.77
COL6A3-203ENST00000353578 CHCHD2Q9Y6H1 151 aaPredicted RBP10.25□□□□□ -0.77
COL6A3-203ENST00000353578 IGHV3-72A0A0B4J1Y9 119 aa10.25□□□□□ -0.77
COL6A3-203ENST00000353578 NDUFS7O75251 213 aa10.25□□□□□ -0.77
COL6A3-203ENST00000353578 GATA2P23769 480 aaPredicted RBP10.25□□□□□ -0.77
COL6A3-203ENST00000353578 UBE2BP63146 152 aa10.25□□□□□ -0.77
COL6A3-203ENST00000353578 ICOSQ9Y6W8 199 aa10.25□□□□□ -0.77
COL6A3-203ENST00000353578 TNRC6BQ9UPQ9 1833 aaKnown RBP10.25□□□□□ -0.77
COL6A3-203ENST00000353578 UCNP55089 124 aa10.25□□□□□ -0.77
COL6A3-203ENST00000353578 BAALC-AS2P0C853 105 aa10.25□□□□□ -0.77
COL6A3-203ENST00000353578 IMMP1LQ96LU5 166 aa10.25□□□□□ -0.77
COL6A3-203ENST00000353578 LTAP01374 205 aa10.25□□□□□ -0.77
COL6A3-203ENST00000353578 EXOC3-AS1Q8N2X6 119 aa10.25□□□□□ -0.77
COL6A3-203ENST00000353578 RBX1P62877 108 aa10.24□□□□□ -0.77
COL6A3-203ENST00000353578 ZNF876PQ49A33 203 aa10.24□□□□□ -0.77
COL6A3-203ENST00000353578 MINOS1Q5TGZ0 78 aa10.24□□□□□ -0.77
COL6A3-203ENST00000353578 COLQQ9Y215 455 aaPredicted RBP10.24□□□□□ -0.77
COL6A3-203ENST00000353578 MINOS1-NBL1R4GNA1 71 aa10.24□□□□□ -0.77
COL6A3-203ENST00000353578 OTOGLQ3ZCN5 2332 aa10.24□□□□□ -0.77
COL6A3-203ENST00000353578 C1orf53Q5VUE5 145 aa10.24□□□□□ -0.77
COL6A3-203ENST00000353578 TRBV10-2A0A0K0K1G8 114 aa10.24□□□□□ -0.77
COL6A3-203ENST00000353578 SRRM5B3KS81 715 aa10.24□□□□□ -0.77
COL6A3-203ENST00000353578 IGHV3-64A0A075B6Q5 118 aa10.24□□□□□ -0.77
COL6A3-203ENST00000353578 C2orf16Q68DN1 1984 aa10.24□□□□□ -0.77
COL6A3-203ENST00000353578 LYPD3O95274 346 aa10.24□□□□□ -0.77
COL6A3-203ENST00000353578 CTSBP07858 339 aa10.24□□□□□ -0.77
COL6A3-203ENST00000353578 FAM236DA0A1B0GTK5 79 aa10.23□□□□□ -0.77
COL6A3-203ENST00000353578 FAM236CP0DP71 79 aa10.23□□□□□ -0.77
COL6A3-203ENST00000353578 LINC00479Q96M42 142 aa10.23□□□□□ -0.77
COL6A3-203ENST00000353578 SRRM4A7MD48 611 aaKnown RBP10.23□□□□□ -0.77
COL6A3-203ENST00000353578 C22orf46C9J442 243 aa10.23□□□□□ -0.77
COL6A3-203ENST00000353578 NTF4P34130 210 aa10.23□□□□□ -0.77
COL6A3-203ENST00000353578 SSC4DQ8WTU2 575 aa10.23□□□□□ -0.77
COL6A3-203ENST00000353578 MUSTN1Q8IVN3 82 aa10.23□□□□□ -0.77
COL6A3-203ENST00000353578 VWC2Q2TAL6 325 aa10.23□□□□□ -0.77
COL6A3-203ENST00000353578 CFHR2P36980 270 aa10.23□□□□□ -0.77
COL6A3-203ENST00000353578 IGKV1D-8A0A087WSZ0 117 aa10.22□□□□□ -0.77
COL6A3-203ENST00000353578 IGHV3-48P01763 117 aa10.22□□□□□ -0.77
COL6A3-203ENST00000353578 C5orf64Q2M2E5 130 aa10.22□□□□□ -0.77
COL6A3-203ENST00000353578 AMTNQ6UX39 209 aa10.22□□□□□ -0.77
COL6A3-203ENST00000353578 TRGV4A0A0C4DH28 118 aa10.22□□□□□ -0.77
COL6A3-203ENST00000353578 COX6A1P12074 109 aa10.22□□□□□ -0.77
COL6A3-203ENST00000353578 C14orf178Q8N769 122 aaPredicted RBP10.22□□□□□ -0.77
COL6A3-203ENST00000353578 Q6Q795 121 aa10.22□□□□□ -0.77
COL6A3-203ENST00000353578 PRSS57Q6UWY2 283 aa10.22□□□□□ -0.77
COL6A3-203ENST00000353578 NDUFB1O75438 58 aa10.21□□□□□ -0.77
COL6A3-203ENST00000353578 LEAP2Q969E1 77 aa10.21□□□□□ -0.77
COL6A3-203ENST00000353578 IGHV3OR16-12A0A075B7B8 117 aa10.21□□□□□ -0.77
COL6A3-203ENST00000353578 LINC01620Q4KN68 170 aa10.21□□□□□ -0.77
COL6A3-203ENST00000353578 INS-IGF2F8WCM5 200 aa10.21□□□□□ -0.77
COL6A3-203ENST00000353578 RCHY1Q96PM5 261 aa10.21□□□□□ -0.78
COL6A3-203ENST00000353578 IGKV2-40A0A087WW87 121 aaPredicted RBP10.21□□□□□ -0.78
COL6A3-203ENST00000353578 FAM90A27PA6NNH2 459 aa10.21□□□□□ -0.78
COL6A3-203ENST00000353578 IGKV2D-40P01614 121 aaPredicted RBP10.21□□□□□ -0.78
COL6A3-203ENST00000353578 CLEC19AQ6UXS0 136 aa10.21□□□□□ -0.78
COL6A3-203ENST00000353578 CRYGBP07316 175 aa10.2□□□□□ -0.78
COL6A3-203ENST00000353578 C15orf32Q32M92 178 aa10.2□□□□□ -0.78
COL6A3-203ENST00000353578 MRPL53Q96EL3 112 aaKnown RBP10.2□□□□□ -0.78
COL6A3-203ENST00000353578 TRBV19A0A075B6N1 114 aa10.2□□□□□ -0.78
COL6A3-203ENST00000353578 ZFP2Q6ZN57 461 aa10.2□□□□□ -0.78
COL6A3-203ENST00000353578 C4orf51C9J302 202 aa10.2□□□□□ -0.78
COL6A3-203ENST00000353578 RNF152Q8N8N0 203 aa10.2□□□□□ -0.78
COL6A3-203ENST00000353578 DCTN5Q9BTE1 182 aa10.2□□□□□ -0.78
COL6A3-203ENST00000353578 U3KQE9 123 aa10.2□□□□□ -0.78
COL6A3-203ENST00000353578 A0A1B0GUS0 222 aa10.19□□□□□ -0.78
COL6A3-203ENST00000353578 ZNF576Q9H609 170 aa10.19□□□□□ -0.78
COL6A3-203ENST00000353578 CECR9P0C854 216 aa10.19□□□□□ -0.78
COL6A3-203ENST00000353578 STHQ8IWL8 128 aa10.19□□□□□ -0.78
COL6A3-203ENST00000353578 LYZL4Q96KX0 146 aa10.19□□□□□ -0.78
COL6A3-203ENST00000353578 TNS1Q9HBL0 1735 aaKnown RBP10.19□□□□□ -0.78
COL6A3-203ENST00000353578 RNASE2P10153 161 aaKnown RBP10.19□□□□□ -0.78
COL6A3-203ENST00000353578 Q6P435 159 aa10.19□□□□□ -0.78
COL6A3-203ENST00000353578 PSG7Q13046 419 aa10.19□□□□□ -0.78
COL6A3-203ENST00000353578 SDHAF1A6NFY7 115 aa10.19□□□□□ -0.78
COL6A3-203ENST00000353578 CCL3L1P16619 93 aa10.19□□□□□ -0.78
COL6A3-203ENST00000353578 TMEM240Q5SV17 173 aa10.19□□□□□ -0.78
COL6A3-203ENST00000353578 SAP30O75446 220 aa10.18□□□□□ -0.78
COL6A3-203ENST00000353578 C11orf44Q8N8P7 122 aa10.18□□□□□ -0.78
COL6A3-203ENST00000353578 FOXF2Q12947 444 aa10.18□□□□□ -0.78
COL6A3-203ENST00000353578 RNF183Q96D59 192 aa10.18□□□□□ -0.78
COL6A3-203ENST00000353578 TECTAO75443 2155 aa10.18□□□□□ -0.78
COL6A3-203ENST00000353578 TMEM256-PLSCR3K7ERE1 68 aa10.18□□□□□ -0.78
COL6A3-203ENST00000353578 SH2D6Q7Z4S9 175 aa10.18□□□□□ -0.78
COL6A3-203ENST00000353578 PTPN13Q12923 2485 aa10.18□□□□□ -0.78
COL6A3-203ENST00000353578 PTPRBP23467 1997 aa10.18□□□□□ -0.78
COL6A3-203ENST00000353578 VOPP1Q96AW1 172 aa10.18□□□□□ -0.78
COL6A3-203ENST00000353578 C1orf159Q96HA4 380 aa10.18□□□□□ -0.78
COL6A3-203ENST00000353578 COL11A2P13942 1736 aaPredicted RBP10.18□□□□□ -0.78
COL6A3-203ENST00000353578 IGKV3D-20A0A0C4DH25 116 aa10.18□□□□□ -0.78
COL6A3-203ENST00000353578 CFHR4Q92496 578 aa10.17□□□□□ -0.78
COL6A3-203ENST00000353578 ITLN2Q8WWU7 325 aaPredicted RBP10.17□□□□□ -0.78
COL6A3-203ENST00000353578 M0R1W7 72 aa10.17□□□□□ -0.78
COL6A3-203ENST00000353578 PCOLCEQ15113 449 aa10.17□□□□□ -0.78
COL6A3-203ENST00000353578 K7EM74 188 aa10.17□□□□□ -0.78
COL6A3-203ENST00000353578 PRR30Q53SZ7 412 aaPredicted RBP10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms