RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 RNASE2P10153 161 aaKnown RBP3.22□□□□□ -1.89
NEDD4-201ENST00000338963 GATA1P15976 413 aaPredicted RBP3.22□□□□□ -1.89
NEDD4-201ENST00000338963 XCL1P47992 114 aa3.22□□□□□ -1.89
NEDD4-201ENST00000338963 DAD1P61803 113 aa3.22□□□□□ -1.89
NEDD4-201ENST00000338963 BEAN1Q3B7T3 259 aa3.22□□□□□ -1.89
NEDD4-201ENST00000338963 PVRIGQ6DKI7 326 aa3.22□□□□□ -1.89
NEDD4-201ENST00000338963 C2orf66Q6UXQ4 117 aa3.22□□□□□ -1.89
NEDD4-201ENST00000338963 CNFNQ9BYD5 112 aa3.22□□□□□ -1.89
NEDD4-201ENST00000338963 XCL2Q9UBD3 114 aa3.22□□□□□ -1.89
NEDD4-201ENST00000338963 BRCA1P38398 1863 aaKnown RBP3.22□□□□□ -1.89
NEDD4-201ENST00000338963 SH2D1AO60880 128 aa3.22□□□□□ -1.89
NEDD4-201ENST00000338963 TSC2P49815 1807 aa3.21□□□□□ -1.89
NEDD4-201ENST00000338963 TIMM17BO60830 172 aa3.21□□□□□ -1.89
NEDD4-201ENST00000338963 FAM19A1Q7Z5A9 133 aa3.21□□□□□ -1.89
NEDD4-201ENST00000338963 TPSG1Q9NRR2 321 aa3.21□□□□□ -1.89
NEDD4-201ENST00000338963 COL4A3Q01955 1670 aa3.21□□□□□ -1.9
NEDD4-201ENST00000338963 IGHV1-45A0A0A0MS14 117 aa3.21□□□□□ -1.9
NEDD4-201ENST00000338963 COX7A2LO14548 114 aa3.21□□□□□ -1.9
NEDD4-201ENST00000338963 C4orf48Q5BLP8 95 aa3.21□□□□□ -1.9
NEDD4-201ENST00000338963 DYNAPQ8N1N2 210 aa3.21□□□□□ -1.9
NEDD4-201ENST00000338963 WFDC11Q8NEX6 87 aa3.21□□□□□ -1.9
NEDD4-201ENST00000338963 FAM110DQ8TAY7 271 aaPredicted RBP3.21□□□□□ -1.9
NEDD4-201ENST00000338963 IQCF6A8MYZ5 107 aa3.21□□□□□ -1.9
NEDD4-201ENST00000338963 GHRHP01286 108 aa3.21□□□□□ -1.9
NEDD4-201ENST00000338963 VEGFBP49765 207 aa3.21□□□□□ -1.9
NEDD4-201ENST00000338963 WFDC3Q8IUB2 231 aa3.21□□□□□ -1.9
NEDD4-201ENST00000338963 COX6B1P14854 86 aa3.21□□□□□ -1.9
NEDD4-201ENST00000338963 TRAV7A0A075B6U4 112 aa3.21□□□□□ -1.9
NEDD4-201ENST00000338963 SS18L1O75177 396 aaPredicted RBP3.21□□□□□ -1.9
NEDD4-201ENST00000338963 CFHR1Q03591 330 aa3.21□□□□□ -1.9
NEDD4-201ENST00000338963 ERCC8Q13216 396 aa3.21□□□□□ -1.9
NEDD4-201ENST00000338963 A0A1W2PQU0 124 aa3.21□□□□□ -1.9
NEDD4-201ENST00000338963 FGFBP3Q8TAT2 258 aa3.21□□□□□ -1.9
NEDD4-201ENST00000338963 TMEM167AQ8TBQ9 72 aa3.21□□□□□ -1.9
NEDD4-201ENST00000338963 TMEM92Q6UXU6 159 aa3.2□□□□□ -1.9
NEDD4-201ENST00000338963 RSPO2Q6UXX9 243 aaPredicted RBP3.2□□□□□ -1.9
NEDD4-201ENST00000338963 Q6ZRU5 148 aa3.2□□□□□ -1.9
NEDD4-201ENST00000338963 MUSTN1Q8IVN3 82 aa3.2□□□□□ -1.9
NEDD4-201ENST00000338963 TRIAP1O43715 76 aa3.2□□□□□ -1.9
NEDD4-201ENST00000338963 IGHV1-69P01742 117 aa3.2□□□□□ -1.9
NEDD4-201ENST00000338963 NTN3O00634 580 aaPredicted RBP3.2□□□□□ -1.9
NEDD4-201ENST00000338963 IGHV4-34P06331 123 aa3.2□□□□□ -1.9
NEDD4-201ENST00000338963 CD24P25063 80 aa3.2□□□□□ -1.9
NEDD4-201ENST00000338963 UBE2BP63146 152 aa3.2□□□□□ -1.9
NEDD4-201ENST00000338963 NUP98P52948 1817 aa3.2□□□□□ -1.9
NEDD4-201ENST00000338963 C5orf63A6NC05 138 aa3.2□□□□□ -1.9
NEDD4-201ENST00000338963 DGAT2L7PQ6IED9 249 aa3.2□□□□□ -1.9
NEDD4-201ENST00000338963 LINC01561Q8N1V8 128 aa3.2□□□□□ -1.9
NEDD4-201ENST00000338963 DEFB126Q9BYW3 111 aa3.2□□□□□ -1.9
NEDD4-201ENST00000338963 A0A1W2PNR3 127 aa3.19□□□□□ -1.9
NEDD4-201ENST00000338963 H0YGX0 51 aa3.19□□□□□ -1.9
NEDD4-201ENST00000338963 MRPL33O75394 65 aaKnown RBP3.19□□□□□ -1.9
NEDD4-201ENST00000338963 BAALC-AS2P0C853 105 aa3.19□□□□□ -1.9
NEDD4-201ENST00000338963 CEMP1Q6PRD7 247 aaPredicted RBP3.19□□□□□ -1.9
NEDD4-201ENST00000338963 C1orf159Q96HA4 380 aa3.19□□□□□ -1.9
NEDD4-201ENST00000338963 CXXC4Q9H2H0 198 aa3.19□□□□□ -1.9
NEDD4-201ENST00000338963 COL5A3P25940 1745 aaPredicted RBP3.19□□□□□ -1.9
NEDD4-201ENST00000338963 WISP1O95388 367 aa3.19□□□□□ -1.9
NEDD4-201ENST00000338963 CD59P13987 128 aa3.19□□□□□ -1.9
NEDD4-201ENST00000338963 PATE2Q6UY27 113 aa3.19□□□□□ -1.9
NEDD4-201ENST00000338963 C20orf204Q6ZNR8 217 aa3.19□□□□□ -1.9
NEDD4-201ENST00000338963 IGHV4-4A0A075B6R2 117 aa3.19□□□□□ -1.9
NEDD4-201ENST00000338963 M0R1B8 84 aa3.19□□□□□ -1.9
NEDD4-201ENST00000338963 HILS1P60008 231 aa3.19□□□□□ -1.9
NEDD4-201ENST00000338963 LYZP61626 148 aa3.19□□□□□ -1.9
NEDD4-201ENST00000338963 PLPPR2Q96GM1 343 aa3.19□□□□□ -1.9
NEDD4-201ENST00000338963 IMMP1LQ96LU5 166 aa3.19□□□□□ -1.9
NEDD4-201ENST00000338963 UBL5Q9BZL1 73 aa3.19□□□□□ -1.9
NEDD4-201ENST00000338963 SPANXN1Q5VSR9 72 aa3.19□□□□□ -1.9
NEDD4-201ENST00000338963 ZNF837Q96EG3 531 aaPredicted RBP3.19□□□□□ -1.9
NEDD4-201ENST00000338963 MED14OSP0DP75 135 aa3.19□□□□□ -1.9
NEDD4-201ENST00000338963 FXYD7P58549 80 aa3.19□□□□□ -1.9
NEDD4-201ENST00000338963 BLCAPP62952 87 aa3.19□□□□□ -1.9
NEDD4-201ENST00000338963 C9orf139Q6ZV77 190 aa3.19□□□□□ -1.9
NEDD4-201ENST00000338963 DAZ4Q86SG3 579 aaKnown RBP3.19□□□□□ -1.9
NEDD4-201ENST00000338963 RNF7Q9UBF6 113 aa3.19□□□□□ -1.9
NEDD4-201ENST00000338963 JMJD7-PLA2G4BH0Y9G9 81 aa3.19□□□□□ -1.9
NEDD4-201ENST00000338963 ZNF22P17026 224 aaPredicted RBP3.19□□□□□ -1.9
NEDD4-201ENST00000338963 SUMO2P61956 95 aaKnown RBP3.19□□□□□ -1.9
NEDD4-201ENST00000338963 LINC00322Q6ZN03 302 aaPredicted RBP3.19□□□□□ -1.9
NEDD4-201ENST00000338963 C20orf197Q8N268 126 aa3.19□□□□□ -1.9
NEDD4-201ENST00000338963 ZNF80P51504 273 aaPredicted RBP3.18□□□□□ -1.9
NEDD4-201ENST00000338963 UBE2E1P51965 193 aa3.18□□□□□ -1.9
NEDD4-201ENST00000338963 KLKP1Q107X0 134 aa3.18□□□□□ -1.9
NEDD4-201ENST00000338963 MRPL14Q6P1L8 145 aaKnown RBP3.18□□□□□ -1.9
NEDD4-201ENST00000338963 ZNF71Q9NQZ8 489 aaPredicted RBP3.18□□□□□ -1.9
NEDD4-201ENST00000338963 ERC2-IT1O76042 136 aa3.18□□□□□ -1.9
NEDD4-201ENST00000338963 MAGEA5P43359 124 aa3.18□□□□□ -1.9
NEDD4-201ENST00000338963 CRIP2P52943 208 aaPredicted RBP3.18□□□□□ -1.9
NEDD4-201ENST00000338963 BRWD1-AS2P59051 145 aa3.18□□□□□ -1.9
NEDD4-201ENST00000338963 A0A1W2PRU2 124 aa3.18□□□□□ -1.9
NEDD4-201ENST00000338963 RNF185Q96GF1 192 aa3.18□□□□□ -1.9
NEDD4-201ENST00000338963 MTCL1Q9Y4B5 1905 aaKnown RBP3.18□□□□□ -1.9
NEDD4-201ENST00000338963 CGB1A6NKQ9 187 aa3.18□□□□□ -1.9
NEDD4-201ENST00000338963 VCYO14598 125 aa3.18□□□□□ -1.9
NEDD4-201ENST00000338963 PRSS2P07478 247 aa3.18□□□□□ -1.9
NEDD4-201ENST00000338963 PRSS12P56730 875 aa3.18□□□□□ -1.9
NEDD4-201ENST00000338963 SNRPD3P62318 126 aaKnown RBP3.18□□□□□ -1.9
NEDD4-201ENST00000338963 PDCD11Q14690 1871 aaKnown RBP3.18□□□□□ -1.9
NEDD4-201ENST00000338963 C11orf44Q8N8P7 122 aa3.18□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms