RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 Q6ZQT7 251 aa10.13□□□□□ -0.79
SDC3-201ENST00000336798 PI4KAP42356 2102 aa10.13□□□□□ -0.79
SDC3-201ENST00000336798 CRLF1O75462 422 aa10.13□□□□□ -0.79
SDC3-201ENST00000336798 TINCRA0A1B0GVN0 87 aa10.13□□□□□ -0.79
SDC3-201ENST00000336798 GAS1P54826 345 aa10.13□□□□□ -0.79
SDC3-201ENST00000336798 HERV-K104P63124 156 aa10.13□□□□□ -0.79
SDC3-201ENST00000336798 POLEQ07864 2286 aa10.13□□□□□ -0.79
SDC3-201ENST00000336798 APOC4P55056 127 aa10.13□□□□□ -0.79
SDC3-201ENST00000336798 HLA-DRB4P13762 266 aa10.13□□□□□ -0.79
SDC3-201ENST00000336798 Q6ZS92 163 aa10.13□□□□□ -0.79
SDC3-201ENST00000336798 TMEM243Q9BU79 118 aa10.13□□□□□ -0.79
SDC3-201ENST00000336798 HLA-DRB4X5D2U9 266 aa10.13□□□□□ -0.79
SDC3-201ENST00000336798 BRWD3Q6RI45 1802 aa10.13□□□□□ -0.79
SDC3-201ENST00000336798 F8W1H4 67 aa10.12□□□□□ -0.79
SDC3-201ENST00000336798 UBE2E1P51965 193 aa10.12□□□□□ -0.79
SDC3-201ENST00000336798 C8orf86Q6ZUL3 223 aa10.12□□□□□ -0.79
SDC3-201ENST00000336798 SCN5AQ14524 2016 aa10.12□□□□□ -0.79
SDC3-201ENST00000336798 CLPSL1A2RUU4 121 aa10.12□□□□□ -0.79
SDC3-201ENST00000336798 E9PQ18 207 aa10.12□□□□□ -0.79
SDC3-201ENST00000336798 IGHG3P01860 377 aa10.12□□□□□ -0.79
SDC3-201ENST00000336798 MRPL23Q16540 153 aaKnown RBP10.12□□□□□ -0.79
SDC3-201ENST00000336798 ETDBQ3ZM63 59 aa10.12□□□□□ -0.79
SDC3-201ENST00000336798 ZMAT4Q9H898 229 aa10.12□□□□□ -0.79
SDC3-201ENST00000336798 A0A1B0GW64 132 aa10.12□□□□□ -0.79
SDC3-201ENST00000336798 LYPD1Q8N2G4 141 aa10.12□□□□□ -0.79
SDC3-201ENST00000336798 IGHV1OR15-1A0A075B7D0 117 aa10.12□□□□□ -0.79
SDC3-201ENST00000336798 FREM3P0C091 2139 aa10.12□□□□□ -0.79
SDC3-201ENST00000336798 C2orf66Q6UXQ4 117 aa10.12□□□□□ -0.79
SDC3-201ENST00000336798 DKK4Q9UBT3 224 aa10.11□□□□□ -0.79
SDC3-201ENST00000336798 WNK3Q9BYP7 1800 aa10.11□□□□□ -0.79
SDC3-201ENST00000336798 CEP250Q9BV73 2442 aa10.11□□□□□ -0.79
SDC3-201ENST00000336798 NRXN2Q9P2S2 1712 aa10.11□□□□□ -0.79
SDC3-201ENST00000336798 TPSG1Q9NRR2 321 aa10.11□□□□□ -0.79
SDC3-201ENST00000336798 PFN1P07737 140 aaKnown RBP10.11□□□□□ -0.79
SDC3-201ENST00000336798 CYYR1Q96J86 154 aa10.11□□□□□ -0.79
SDC3-201ENST00000336798 LRRK1Q38SD2 2015 aa10.1□□□□□ -0.79
SDC3-201ENST00000336798 IGLC2P0DOY2 106 aa10.1□□□□□ -0.79
SDC3-201ENST00000336798 IGLC3P0DOY3 106 aa10.1□□□□□ -0.79
SDC3-201ENST00000336798 XCL1P47992 114 aa10.1□□□□□ -0.79
SDC3-201ENST00000336798 PPDPFLQ8WWR9 84 aa10.1□□□□□ -0.79
SDC3-201ENST00000336798 ARFGEF3Q5TH69 2177 aa10.1□□□□□ -0.79
SDC3-201ENST00000336798 IGHV2-70DA0A0C4DH43 119 aa10.1□□□□□ -0.79
SDC3-201ENST00000336798 J3QKU1 62 aa10.1□□□□□ -0.79
SDC3-201ENST00000336798 DEFB136Q30KP8 78 aa10.1□□□□□ -0.79
SDC3-201ENST00000336798 A0A1W2PPM0 123 aa10.1□□□□□ -0.79
SDC3-201ENST00000336798 SPRY2O43597 315 aa10.1□□□□□ -0.79
SDC3-201ENST00000336798 NOP10Q9NPE3 64 aaKnown RBP10.1□□□□□ -0.79
SDC3-201ENST00000336798 DOPEY2Q9Y3R5 2298 aa10.09□□□□□ -0.79
SDC3-201ENST00000336798 SDHAF1A6NFY7 115 aa10.09□□□□□ -0.79
SDC3-201ENST00000336798 TMEM75Q8N9X5 138 aa10.09□□□□□ -0.79
SDC3-201ENST00000336798 K7ENP7 123 aa10.09□□□□□ -0.79
SDC3-201ENST00000336798 CRYGCP07315 174 aa10.09□□□□□ -0.79
SDC3-201ENST00000336798 RPL18AQ02543 176 aaKnown RBP10.09□□□□□ -0.79
SDC3-201ENST00000336798 DIAPH2-AS1Q14236 149 aa10.09□□□□□ -0.79
SDC3-201ENST00000336798 Q6ZWC4 215 aa10.09□□□□□ -0.79
SDC3-201ENST00000336798 MYO7BQ6PIF6 2116 aa10.09□□□□□ -0.79
SDC3-201ENST00000336798 DSCR8Q96T75 97 aa10.09□□□□□ -0.79
SDC3-201ENST00000336798 C5orf47Q569G3 176 aa10.08□□□□□ -0.8
SDC3-201ENST00000336798 KLF2Q9Y5W3 355 aaPredicted RBP10.08□□□□□ -0.8
SDC3-201ENST00000336798 TRAV1-1A0A0B4J248 108 aa10.08□□□□□ -0.8
SDC3-201ENST00000336798 DOCK10Q96BY6 2186 aa10.08□□□□□ -0.8
SDC3-201ENST00000336798 POU2AF1Q16633 256 aa10.08□□□□□ -0.8
SDC3-201ENST00000336798 ARTNQ5T4W7 220 aa10.08□□□□□ -0.8
SDC3-201ENST00000336798 SMIM2Q9BVW6 85 aa10.08□□□□□ -0.8
SDC3-201ENST00000336798 MED12Q93074 2177 aa10.08□□□□□ -0.8
SDC3-201ENST00000336798 DIDO1Q9BTC0 2240 aaKnown RBP10.08□□□□□ -0.8
SDC3-201ENST00000336798 WIPF3A6NGB9 483 aa10.08□□□□□ -0.8
SDC3-201ENST00000336798 MRPL27Q9P0M9 148 aaKnown RBP10.08□□□□□ -0.8
SDC3-201ENST00000336798 MRPL51Q4U2R6 128 aaKnown RBP10.07□□□□□ -0.8
SDC3-201ENST00000336798 UBL5Q9BZL1 73 aa10.07□□□□□ -0.8
SDC3-201ENST00000336798 CACNA1EQ15878 2313 aa10.07□□□□□ -0.8
SDC3-201ENST00000336798 IGHV4-28A0A0C4DH34 117 aa10.07□□□□□ -0.8
SDC3-201ENST00000336798 F6UB75 175 aa10.07□□□□□ -0.8
SDC3-201ENST00000336798 LOC285556D6RIA3 1793 aa10.07□□□□□ -0.8
SDC3-201ENST00000336798 C9JQL5 133 aa10.07□□□□□ -0.8
SDC3-201ENST00000336798 NDUFC2O95298 119 aa10.07□□□□□ -0.8
SDC3-201ENST00000336798 ESM1Q9NQ30 184 aa10.07□□□□□ -0.8
SDC3-201ENST00000336798 HEATR1Q9H583 2144 aaKnown RBP10.07□□□□□ -0.8
SDC3-201ENST00000336798 J3KT08 172 aa10.07□□□□□ -0.8
SDC3-201ENST00000336798 COL4A6Q14031 1691 aa10.07□□□□□ -0.8
SDC3-201ENST00000336798 RHODO00212 210 aa10.07□□□□□ -0.8
SDC3-201ENST00000336798 FGF6P10767 208 aa10.06□□□□□ -0.8
SDC3-201ENST00000336798 QRFPP83859 136 aa10.06□□□□□ -0.8
SDC3-201ENST00000336798 KIAA2026Q5HYC2 2103 aa10.06□□□□□ -0.8
SDC3-201ENST00000336798 TMEM141Q96I45 108 aa10.06□□□□□ -0.8
SDC3-201ENST00000336798 XIRP1Q702N8 1843 aaKnown RBP10.06□□□□□ -0.8
SDC3-201ENST00000336798 GATA3P23771 443 aa10.06□□□□□ -0.8
SDC3-201ENST00000336798 BVES-AS1Q5T3Y7 98 aa10.06□□□□□ -0.8
SDC3-201ENST00000336798 IGKV1-6A0A0C4DH72 117 aa10.06□□□□□ -0.8
SDC3-201ENST00000336798 PRSS46E5RG02 174 aa10.06□□□□□ -0.8
SDC3-201ENST00000336798 IGHG4P01861 327 aa10.06□□□□□ -0.8
SDC3-201ENST00000336798 APRG1Q8IVJ8 170 aa10.06□□□□□ -0.8
SDC3-201ENST00000336798 Q8N8P6 123 aa10.06□□□□□ -0.8
SDC3-201ENST00000336798 RMI2Q96E14 147 aa10.06□□□□□ -0.8
SDC3-201ENST00000336798 NDUFA12Q9UI09 145 aa10.06□□□□□ -0.8
SDC3-201ENST00000336798 HLA-DMBP28068 263 aa10.05□□□□□ -0.8
SDC3-201ENST00000336798 TRBV19A0A075B6N1 114 aa10.05□□□□□ -0.8
SDC3-201ENST00000336798 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.05□□□□□ -0.8
SDC3-201ENST00000336798 IGKV2-29A2NJV5 120 aaPredicted RBP10.05□□□□□ -0.8
SDC3-201ENST00000336798 K7ERJ3 54 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 91 ms