RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 TRAV25A0A0B4J276 109 aa5.4□□□□□ -1.55
SF3B1-201ENST00000335508 A6NDX4 124 aa5.4□□□□□ -1.55
SF3B1-201ENST00000335508 SNCGO76070 127 aa5.4□□□□□ -1.55
SF3B1-201ENST00000335508 INSP01308 110 aa5.4□□□□□ -1.55
SF3B1-201ENST00000335508 CD7P09564 240 aa5.4□□□□□ -1.55
SF3B1-201ENST00000335508 ZNF415Q09FC8 603 aa5.4□□□□□ -1.55
SF3B1-201ENST00000335508 ZNF56Q15929 161 aa5.4□□□□□ -1.55
SF3B1-201ENST00000335508 C5orf56Q8N8D9 126 aa5.4□□□□□ -1.55
SF3B1-201ENST00000335508 PRR25Q96S07 402 aa5.4□□□□□ -1.55
SF3B1-201ENST00000335508 AGRNO00468 2067 aa5.4□□□□□ -1.55
SF3B1-201ENST00000335508 IGHV3OR16-12A0A075B7B8 117 aa5.4□□□□□ -1.55
SF3B1-201ENST00000335508 HOXA3O43365 443 aaPredicted RBP5.4□□□□□ -1.55
SF3B1-201ENST00000335508 TYMSP04818 313 aa5.4□□□□□ -1.55
SF3B1-201ENST00000335508 IGHV3-66A0A0C4DH42 116 aa5.4□□□□□ -1.55
SF3B1-201ENST00000335508 GRIFINA4D1Z8 144 aa5.4□□□□□ -1.55
SF3B1-201ENST00000335508 INSL3P51460 131 aa5.4□□□□□ -1.55
SF3B1-201ENST00000335508 Q6ZPA2 131 aa5.4□□□□□ -1.55
SF3B1-201ENST00000335508 FANCD2OSQ96PS1 177 aa5.4□□□□□ -1.55
SF3B1-201ENST00000335508 GFRA4Q9GZZ7 299 aa5.4□□□□□ -1.55
SF3B1-201ENST00000335508 BUB3O43684 328 aa5.39□□□□□ -1.55
SF3B1-201ENST00000335508 IGHG4P01861 327 aa5.39□□□□□ -1.55
SF3B1-201ENST00000335508 FOLR2P14207 255 aa5.39□□□□□ -1.55
SF3B1-201ENST00000335508 DEFB131AP59861 70 aa5.39□□□□□ -1.55
SF3B1-201ENST00000335508 ORMDL2Q53FV1 153 aa5.39□□□□□ -1.55
SF3B1-201ENST00000335508 PRDM13Q9H4Q3 707 aa5.39□□□□□ -1.55
SF3B1-201ENST00000335508 TSSC4Q9Y5U2 329 aaPredicted RBP5.39□□□□□ -1.55
SF3B1-201ENST00000335508 GGTLC3B5MD39 225 aa5.39□□□□□ -1.55
SF3B1-201ENST00000335508 FAM74A4Q5TZK3 123 aa5.39□□□□□ -1.55
SF3B1-201ENST00000335508 TRAV8-1A0A0A6YYK1 113 aa5.39□□□□□ -1.55
SF3B1-201ENST00000335508 CRXO43186 299 aaPredicted RBP5.39□□□□□ -1.55
SF3B1-201ENST00000335508 BRWD1-AS2P59051 145 aa5.39□□□□□ -1.55
SF3B1-201ENST00000335508 TMEM170AQ8WVE7 144 aa5.39□□□□□ -1.55
SF3B1-201ENST00000335508 SPXQ9BT56 116 aa5.39□□□□□ -1.55
SF3B1-201ENST00000335508 GSX1Q9H4S2 264 aaPredicted RBP5.39□□□□□ -1.55
SF3B1-201ENST00000335508 TEX22C9J3V5 150 aa5.39□□□□□ -1.55
SF3B1-201ENST00000335508 PFN1P07737 140 aaKnown RBP5.39□□□□□ -1.55
SF3B1-201ENST00000335508 MYCNOSP40205 109 aa5.39□□□□□ -1.55
SF3B1-201ENST00000335508 GNG5P63218 68 aa5.39□□□□□ -1.55
SF3B1-201ENST00000335508 KIAA1644Q3SXP7 199 aa5.39□□□□□ -1.55
SF3B1-201ENST00000335508 FAM120AOSQ5T036 256 aa5.39□□□□□ -1.55
SF3B1-201ENST00000335508 HOXD3P31249 432 aaPredicted RBP5.38□□□□□ -1.55
SF3B1-201ENST00000335508 ANKRD39Q53RE8 183 aa5.38□□□□□ -1.55
SF3B1-201ENST00000335508 SMIM20Q8N5G0 67 aa5.38□□□□□ -1.55
SF3B1-201ENST00000335508 WFDC11Q8NEX6 87 aa5.38□□□□□ -1.55
SF3B1-201ENST00000335508 OR11H2Q8NH07 326 aa5.38□□□□□ -1.55
SF3B1-201ENST00000335508 RNASE7Q9H1E1 156 aaKnown RBP5.38□□□□□ -1.55
SF3B1-201ENST00000335508 ZNF580Q9UK33 172 aa5.38□□□□□ -1.55
SF3B1-201ENST00000335508 RNF152Q8N8N0 203 aa5.38□□□□□ -1.55
SF3B1-201ENST00000335508 ALKBH7Q9BT30 221 aaPredicted RBP5.38□□□□□ -1.55
SF3B1-201ENST00000335508 FCN3O75636 299 aa5.38□□□□□ -1.55
SF3B1-201ENST00000335508 SEC11AP67812 179 aa5.38□□□□□ -1.55
SF3B1-201ENST00000335508 ATRAIDQ6UW56 229 aa5.38□□□□□ -1.55
SF3B1-201ENST00000335508 HSPB9Q9BQS6 159 aa5.38□□□□□ -1.55
SF3B1-201ENST00000335508 HNRNPA3P51991 378 aaKnown RBP5.38□□□□□ -1.55
SF3B1-201ENST00000335508 RPL36AP83881 106 aaKnown RBP5.38□□□□□ -1.55
SF3B1-201ENST00000335508 RPL36ALQ969Q0 106 aaKnown RBP5.38□□□□□ -1.55
SF3B1-201ENST00000335508 DIRC3C9JPN6 131 aa5.38□□□□□ -1.55
SF3B1-201ENST00000335508 IGLV2-23P01705 113 aa5.38□□□□□ -1.55
SF3B1-201ENST00000335508 FBLN7Q53RD9 439 aa5.38□□□□□ -1.55
SF3B1-201ENST00000335508 SCGB1D4Q6XE38 83 aa5.38□□□□□ -1.55
SF3B1-201ENST00000335508 C8orf86Q6ZUL3 223 aa5.38□□□□□ -1.55
SF3B1-201ENST00000335508 IGLV2-14P01704 120 aa5.37□□□□□ -1.55
SF3B1-201ENST00000335508 CDKN1BP46527 198 aa5.37□□□□□ -1.55
SF3B1-201ENST00000335508 TMEM75Q8N9X5 138 aa5.37□□□□□ -1.55
SF3B1-201ENST00000335508 NRGNQ92686 78 aa5.37□□□□□ -1.55
SF3B1-201ENST00000335508 LY6LH3BQJ8 138 aa5.37□□□□□ -1.55
SF3B1-201ENST00000335508 CD5LO43866 347 aa5.37□□□□□ -1.55
SF3B1-201ENST00000335508 MDKP21741 143 aaPredicted RBP5.37□□□□□ -1.55
SF3B1-201ENST00000335508 ZNF414Q96IQ9 312 aa5.37□□□□□ -1.55
SF3B1-201ENST00000335508 CYSLTR1Q9Y271 337 aa5.37□□□□□ -1.55
SF3B1-201ENST00000335508 CD33P20138 364 aa5.37□□□□□ -1.55
SF3B1-201ENST00000335508 NDPQ00604 133 aa5.37□□□□□ -1.55
SF3B1-201ENST00000335508 DPH3P1Q9H4G8 78 aa5.37□□□□□ -1.55
SF3B1-201ENST00000335508 RBAKDNA6NC62 111 aa5.37□□□□□ -1.55
SF3B1-201ENST00000335508 MUC21Q5SSG8 566 aa5.37□□□□□ -1.55
SF3B1-201ENST00000335508 C11orf1Q9H5F2 150 aa5.37□□□□□ -1.55
SF3B1-201ENST00000335508 PKIGQ9Y2B9 76 aa5.37□□□□□ -1.55
SF3B1-201ENST00000335508 A0A1W2PPR1 153 aa5.37□□□□□ -1.55
SF3B1-201ENST00000335508 COL4A2P08572 1712 aa5.37□□□□□ -1.55
SF3B1-201ENST00000335508 COLCA2A8K830 154 aa5.36□□□□□ -1.55
SF3B1-201ENST00000335508 C19orf54Q5BKX5 351 aa5.36□□□□□ -1.55
SF3B1-201ENST00000335508 PYGO2Q9BRQ0 406 aa5.36□□□□□ -1.55
SF3B1-201ENST00000335508 DERL1Q9BUN8 251 aa5.36□□□□□ -1.55
SF3B1-201ENST00000335508 ARHGAP21Q5T5U3 1957 aa5.36□□□□□ -1.55
SF3B1-201ENST00000335508 ADMP35318 185 aa5.36□□□□□ -1.55
SF3B1-201ENST00000335508 TMEM256Q8N2U0 113 aa5.36□□□□□ -1.55
SF3B1-201ENST00000335508 FXYD5Q96DB9 178 aa5.36□□□□□ -1.55
SF3B1-201ENST00000335508 PGPEP1Q9NXJ5 209 aa5.36□□□□□ -1.55
SF3B1-201ENST00000335508 IGKV1OR2-108A0A075B7D4 117 aa5.36□□□□□ -1.55
SF3B1-201ENST00000335508 FOXI2Q6ZQN5 318 aa5.36□□□□□ -1.55
SF3B1-201ENST00000335508 Q71RC1 249 aaPredicted RBP5.36□□□□□ -1.55
SF3B1-201ENST00000335508 A8MWP6 167 aa5.36□□□□□ -1.55
SF3B1-201ENST00000335508 EIF4EBP1Q13541 118 aaPredicted RBP5.36□□□□□ -1.55
SF3B1-201ENST00000335508 Q8N6K4 173 aa5.36□□□□□ -1.55
SF3B1-201ENST00000335508 H3BVH4 76 aa5.36□□□□□ -1.55
SF3B1-201ENST00000335508 J3QR89 54 aa5.36□□□□□ -1.55
SF3B1-201ENST00000335508 HBDP02042 147 aa5.36□□□□□ -1.55
SF3B1-201ENST00000335508 CXCL1P09341 107 aa5.36□□□□□ -1.55
SF3B1-201ENST00000335508 ARMS2P0C7Q2 107 aa5.36□□□□□ -1.55
SF3B1-201ENST00000335508 NSUN5P1Q3KNT7 163 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 131 ms