RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 IGLV1-51P01701 117 aa11.17□□□□□ -0.62
CCDC88C-202ENST00000334448 CD300EQ496F6 205 aaPredicted RBP11.17□□□□□ -0.62
CCDC88C-202ENST00000334448 RBPMS2Q6ZRY4 209 aaKnown RBP11.17□□□□□ -0.62
CCDC88C-202ENST00000334448 PRNTQ86SH4 94 aa11.17□□□□□ -0.62
CCDC88C-202ENST00000334448 GBGT1Q8N5D6 347 aa11.17□□□□□ -0.62
CCDC88C-202ENST00000334448 OR8A1Q8NGG7 326 aa11.17□□□□□ -0.62
CCDC88C-202ENST00000334448 LINC00477Q96M19 166 aa11.17□□□□□ -0.62
CCDC88C-202ENST00000334448 PRR25Q96S07 402 aa11.17□□□□□ -0.62
CCDC88C-202ENST00000334448 VGLL1Q99990 258 aa11.17□□□□□ -0.62
CCDC88C-202ENST00000334448 C19orf71A6NCJ1 209 aa11.16□□□□□ -0.62
CCDC88C-202ENST00000334448 OR4C46A6NHA9 309 aa11.16□□□□□ -0.62
CCDC88C-202ENST00000334448 H7BYZ3 331 aa11.16□□□□□ -0.62
CCDC88C-202ENST00000334448 PF4P02776 101 aa11.16□□□□□ -0.62
CCDC88C-202ENST00000334448 ZNF138P52744 262 aa11.16□□□□□ -0.62
CCDC88C-202ENST00000334448 FAM24BQ8N5W8 94 aa11.16□□□□□ -0.62
CCDC88C-202ENST00000334448 SGK494Q96LW2 274 aa11.16□□□□□ -0.62
CCDC88C-202ENST00000334448 YPEL4Q96NS1 127 aa11.16□□□□□ -0.62
CCDC88C-202ENST00000334448 IMMP2LQ96T52 175 aa11.16□□□□□ -0.62
CCDC88C-202ENST00000334448 AGPAT4-IT1Q9H0P7 198 aa11.16□□□□□ -0.62
CCDC88C-202ENST00000334448 AURKAIP1Q9NWT8 199 aaPredicted RBP11.16□□□□□ -0.62
CCDC88C-202ENST00000334448 ZNF256Q9Y2P7 627 aaPredicted RBP11.16□□□□□ -0.62
CCDC88C-202ENST00000334448 WNK1Q9H4A3 2382 aa11.16□□□□□ -0.62
CCDC88C-202ENST00000334448 IGKV3-7A0A075B6H7 116 aa11.15□□□□□ -0.62
CCDC88C-202ENST00000334448 A8MTW9 85 aa11.15□□□□□ -0.62
CCDC88C-202ENST00000334448 BTN1A1Q13410 526 aa11.15□□□□□ -0.62
CCDC88C-202ENST00000334448 CT83Q5H943 113 aa11.15□□□□□ -0.62
CCDC88C-202ENST00000334448 TMEM78Q5T7P6 136 aa11.15□□□□□ -0.62
CCDC88C-202ENST00000334448 CBLN2Q8IUK8 224 aa11.15□□□□□ -0.62
CCDC88C-202ENST00000334448 APRG1Q8IVJ8 170 aa11.15□□□□□ -0.62
CCDC88C-202ENST00000334448 OR10G8Q8NGN5 311 aa11.15□□□□□ -0.62
CCDC88C-202ENST00000334448 OR10J6PQ8NGY7 276 aa11.15□□□□□ -0.62
CCDC88C-202ENST00000334448 FAM19A4Q96LR4 140 aa11.15□□□□□ -0.62
CCDC88C-202ENST00000334448 ODF3Q96PU9 254 aa11.15□□□□□ -0.62
CCDC88C-202ENST00000334448 NDFIP1Q9BT67 221 aa11.15□□□□□ -0.62
CCDC88C-202ENST00000334448 ZNF688P0C7X2 276 aa11.14□□□□□ -0.63
CCDC88C-202ENST00000334448 MGST1P10620 155 aaKnown RBP11.14□□□□□ -0.63
CCDC88C-202ENST00000334448 INSL3P51460 131 aa11.14□□□□□ -0.63
CCDC88C-202ENST00000334448 OR5I1Q13606 314 aa11.14□□□□□ -0.63
CCDC88C-202ENST00000334448 TMEM88Q6PEY1 159 aa11.14□□□□□ -0.63
CCDC88C-202ENST00000334448 FOXI2Q6ZQN5 318 aa11.14□□□□□ -0.63
CCDC88C-202ENST00000334448 C15orf54Q8N8G6 183 aa11.14□□□□□ -0.63
CCDC88C-202ENST00000334448 NHLRC2Q8NBF2 726 aa11.14□□□□□ -0.63
CCDC88C-202ENST00000334448 ZC2HC1AQ96GY0 325 aa11.14□□□□□ -0.63
CCDC88C-202ENST00000334448 FAM110AQ9BQ89 295 aa11.14□□□□□ -0.63
CCDC88C-202ENST00000334448 V9GYV3 84 aa11.14□□□□□ -0.63
CCDC88C-202ENST00000334448 A0A0J9YX75 114 aa11.13□□□□□ -0.63
CCDC88C-202ENST00000334448 SAP30O75446 220 aa11.13□□□□□ -0.63
CCDC88C-202ENST00000334448 CRISP2P16562 243 aa11.13□□□□□ -0.63
CCDC88C-202ENST00000334448 ERVFC1-1P60608 527 aa11.13□□□□□ -0.63
CCDC88C-202ENST00000334448 ERCC8Q13216 396 aa11.13□□□□□ -0.63
CCDC88C-202ENST00000334448 PSMG4Q5JS54 123 aa11.13□□□□□ -0.63
CCDC88C-202ENST00000334448 IBA57Q5T440 356 aaKnown RBP11.13□□□□□ -0.63
CCDC88C-202ENST00000334448 WFDC3Q8IUB2 231 aa11.13□□□□□ -0.63
CCDC88C-202ENST00000334448 WFDC9Q8NEX5 89 aa11.13□□□□□ -0.63
CCDC88C-202ENST00000334448 Q8TAT8 98 aa11.13□□□□□ -0.63
CCDC88C-202ENST00000334448 TMEM158Q8WZ71 300 aa11.13□□□□□ -0.63
CCDC88C-202ENST00000334448 GPR61Q9BZJ8 451 aa11.13□□□□□ -0.63
CCDC88C-202ENST00000334448 SELENOKQ9Y6D0 94 aa11.13□□□□□ -0.63
CCDC88C-202ENST00000334448 PFN1P07737 140 aaKnown RBP11.12□□□□□ -0.63
CCDC88C-202ENST00000334448 CT45A10P0DMU9 189 aa11.12□□□□□ -0.63
CCDC88C-202ENST00000334448 TFPI2P48307 235 aa11.12□□□□□ -0.63
CCDC88C-202ENST00000334448 SMUG1Q53HV7 270 aa11.12□□□□□ -0.63
CCDC88C-202ENST00000334448 SHISA2Q6UWI4 295 aa11.12□□□□□ -0.63
CCDC88C-202ENST00000334448 NUDT10Q8NFP7 164 aa11.12□□□□□ -0.63
CCDC88C-202ENST00000334448 OR4B1Q8NGF8 309 aa11.12□□□□□ -0.63
CCDC88C-202ENST00000334448 NUDT11Q96G61 164 aa11.12□□□□□ -0.63
CCDC88C-202ENST00000334448 RNASE7Q9H1E1 156 aaKnown RBP11.12□□□□□ -0.63
CCDC88C-202ENST00000334448 SAV1Q9H4B6 383 aaPredicted RBP11.12□□□□□ -0.63
CCDC88C-202ENST00000334448 FBN1P35555 2871 aaKnown RBP11.12□□□□□ -0.63
CCDC88C-202ENST00000334448 WIPF1O43516 503 aa11.11□□□□□ -0.63
CCDC88C-202ENST00000334448 DUSP14O95147 198 aaKnown RBP11.11□□□□□ -0.63
CCDC88C-202ENST00000334448 CRIP1P50238 77 aa11.11□□□□□ -0.63
CCDC88C-202ENST00000334448 CMC4P56277 68 aaPredicted RBP11.11□□□□□ -0.63
CCDC88C-202ENST00000334448 HIST1H1AQ02539 215 aaPredicted RBP11.11□□□□□ -0.63
CCDC88C-202ENST00000334448 LINC00322Q6ZN03 302 aaPredicted RBP11.11□□□□□ -0.63
CCDC88C-202ENST00000334448 CLUHP3Q96NS8 147 aa11.11□□□□□ -0.63
CCDC88C-202ENST00000334448 PYGO2Q9BRQ0 406 aa11.11□□□□□ -0.63
CCDC88C-202ENST00000334448 MAP6D1Q9H9H5 199 aa11.11□□□□□ -0.63
CCDC88C-202ENST00000334448 TRBV24-1A0A075B6N3 115 aa11.1□□□□□ -0.63
CCDC88C-202ENST00000334448 TRAV9-1A0A075B6T8 112 aa11.1□□□□□ -0.63
CCDC88C-202ENST00000334448 IZUMO1RA6ND01 250 aa11.1□□□□□ -0.63
CCDC88C-202ENST00000334448 BEAN1Q3B7T3 259 aa11.1□□□□□ -0.63
CCDC88C-202ENST00000334448 FAM162BQ5T6X4 162 aa11.1□□□□□ -0.63
CCDC88C-202ENST00000334448 EBLN2Q6P2I7 272 aa11.1□□□□□ -0.63
CCDC88C-202ENST00000334448 ZFAND2AQ8N6M9 145 aa11.1□□□□□ -0.63
CCDC88C-202ENST00000334448 C8orf49Q96NF6 230 aa11.1□□□□□ -0.63
CCDC88C-202ENST00000334448 MCRIP2Q9BUT9 160 aaKnown RBP11.1□□□□□ -0.63
CCDC88C-202ENST00000334448 IL36BQ9NZH7 164 aa11.1□□□□□ -0.63
CCDC88C-202ENST00000334448 FAM231BA6NCW3 169 aa11.09□□□□□ -0.63
CCDC88C-202ENST00000334448 COLCA2A8K830 154 aa11.09□□□□□ -0.63
CCDC88C-202ENST00000334448 F6UB75 175 aa11.09□□□□□ -0.63
CCDC88C-202ENST00000334448 GATCO43716 136 aaKnown RBP11.09□□□□□ -0.63
CCDC88C-202ENST00000334448 P01737 135 aa11.09□□□□□ -0.63
CCDC88C-202ENST00000334448 HLA-DRB4P13762 266 aa11.09□□□□□ -0.63
CCDC88C-202ENST00000334448 DEFB1P60022 68 aa11.09□□□□□ -0.63
CCDC88C-202ENST00000334448 ELOBQ15370 118 aa11.09□□□□□ -0.63
CCDC88C-202ENST00000334448 ODF3L2Q3SX64 289 aa11.09□□□□□ -0.63
CCDC88C-202ENST00000334448 C9orf66Q5T8R8 295 aa11.09□□□□□ -0.63
CCDC88C-202ENST00000334448 PRR27Q6MZM9 219 aa11.09□□□□□ -0.63
CCDC88C-202ENST00000334448 BTF3L4Q96K17 158 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms