RNA–Protein interactions for RNA: ENST00000329231.8

ATPAF1-201, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 2 BASIC

Gene ATPAF1, Length 1,241 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-201ENST00000329231 ERCC8Q13216 396 aa19.62■□□□□ 0.73
ATPAF1-201ENST00000329231 FAM122CQ6P4D5 195 aa19.62■□□□□ 0.73
ATPAF1-201ENST00000329231 OR10G4Q8NGN3 311 aa19.62■□□□□ 0.73
ATPAF1-201ENST00000329231 OR10G9Q8NGN4 311 aa19.62■□□□□ 0.73
ATPAF1-201ENST00000329231 OR10G7Q8NGN6 311 aa19.62■□□□□ 0.73
ATPAF1-201ENST00000329231 GNPNAT1Q96EK6 184 aaPredicted RBP19.62■□□□□ 0.73
ATPAF1-201ENST00000329231 A0A1W2PPV4 95 aa19.61■□□□□ 0.73
ATPAF1-201ENST00000329231 UBE2L3P68036 154 aaKnown RBP19.61■□□□□ 0.73
ATPAF1-201ENST00000329231 TMEM263Q8WUH6 116 aaKnown RBP19.61■□□□□ 0.73
ATPAF1-201ENST00000329231 ZNF503Q96F45 646 aa19.61■□□□□ 0.73
ATPAF1-201ENST00000329231 AGPAT4-IT1Q9H0P7 198 aa19.61■□□□□ 0.73
ATPAF1-201ENST00000329231 HMSDA8MTL9 139 aa19.6■□□□□ 0.73
ATPAF1-201ENST00000329231 MBP02144 154 aa19.6■□□□□ 0.73
ATPAF1-201ENST00000329231 ZNF345Q14585 488 aa19.6■□□□□ 0.73
ATPAF1-201ENST00000329231 C9orf47Q6ZRZ4 202 aa19.6■□□□□ 0.73
ATPAF1-201ENST00000329231 CCDC28AQ8IWP9 274 aa19.6■□□□□ 0.73
ATPAF1-201ENST00000329231 LYPD1Q8N2G4 141 aa19.6■□□□□ 0.73
ATPAF1-201ENST00000329231 PHYHIPLQ96FC7 376 aa19.6■□□□□ 0.73
ATPAF1-201ENST00000329231 SH3BGRL3Q9H299 93 aa19.6■□□□□ 0.73
ATPAF1-201ENST00000329231 TIMM8BQ9Y5J9 83 aaPredicted RBP19.6■□□□□ 0.73
ATPAF1-201ENST00000329231 TRAV12-3A0A0B4J271 114 aa19.59■□□□□ 0.73
ATPAF1-201ENST00000329231 SLC25A5P05141 298 aaKnown RBP19.59■□□□□ 0.73
ATPAF1-201ENST00000329231 OR11H4Q8NGC9 324 aa19.59■□□□□ 0.73
ATPAF1-201ENST00000329231 RNASE8Q8TDE3 154 aaKnown RBP19.59■□□□□ 0.73
ATPAF1-201ENST00000329231 DEFB130BP0DP73 79 aa19.58■□□□□ 0.72
ATPAF1-201ENST00000329231 DEFB130AP0DP74 79 aa19.58■□□□□ 0.72
ATPAF1-201ENST00000329231 RANP62826 216 aaKnown RBP19.58■□□□□ 0.72
ATPAF1-201ENST00000329231 TMEM78Q5T7P6 136 aa19.58■□□□□ 0.72
ATPAF1-201ENST00000329231 KCNRGQ8N5I3 272 aa19.58■□□□□ 0.72
ATPAF1-201ENST00000329231 IGKV2-40A0A087WW87 121 aaPredicted RBP19.57■□□□□ 0.72
ATPAF1-201ENST00000329231 IGKV2D-40P01614 121 aaPredicted RBP19.57■□□□□ 0.72
ATPAF1-201ENST00000329231 CSN1S1P47710 185 aa19.57■□□□□ 0.72
ATPAF1-201ENST00000329231 CDC34P49427 236 aaPredicted RBP19.57■□□□□ 0.72
ATPAF1-201ENST00000329231 PQLC2Q6ZP29 291 aa19.57■□□□□ 0.72
ATPAF1-201ENST00000329231 FAM19A4Q96LR4 140 aa19.57■□□□□ 0.72
ATPAF1-201ENST00000329231 PYGO2Q9BRQ0 406 aa19.57■□□□□ 0.72
ATPAF1-201ENST00000329231 CYTL1Q9NRR1 136 aa19.57■□□□□ 0.72
ATPAF1-201ENST00000329231 C7orf71A4D174 169 aa19.56■□□□□ 0.72
ATPAF1-201ENST00000329231 KLLNB2CW77 178 aa19.56■□□□□ 0.72
ATPAF1-201ENST00000329231 EIF3GO75821 320 aaKnown RBP eCLIP19.56■□□□□ 0.72
ATPAF1-201ENST00000329231 P0DMU3 169 aa19.56■□□□□ 0.72
ATPAF1-201ENST00000329231 FAM231AP0DMU4 169 aa19.56■□□□□ 0.72
ATPAF1-201ENST00000329231 FAM231CP0DMU5 169 aa19.56■□□□□ 0.72
ATPAF1-201ENST00000329231 Q9H3A6 140 aa19.56■□□□□ 0.72
ATPAF1-201ENST00000329231 NMBP08949 121 aa19.55■□□□□ 0.72
ATPAF1-201ENST00000329231 ST6GAL2Q96JF0 529 aa19.55■□□□□ 0.72
ATPAF1-201ENST00000329231 VGLL1Q99990 258 aa19.55■□□□□ 0.72
ATPAF1-201ENST00000329231 ARPC5LQ9BPX5 153 aa19.55■□□□□ 0.72
ATPAF1-201ENST00000329231 NOP10Q9NPE3 64 aaKnown RBP19.55■□□□□ 0.72
ATPAF1-201ENST00000329231 CRISP2P16562 243 aa19.54■□□□□ 0.72
ATPAF1-201ENST00000329231 KMT2AQ03164 3969 aa19.53■□□□□ 0.72
ATPAF1-201ENST00000329231 A0A0D9SG52 128 aa19.53■□□□□ 0.72
ATPAF1-201ENST00000329231 GPX1P07203 203 aa19.53■□□□□ 0.72
ATPAF1-201ENST00000329231 ZNF492Q9P255 531 aa19.53■□□□□ 0.72
ATPAF1-201ENST00000329231 RBAKDNA6NC62 111 aa19.52■□□□□ 0.72
ATPAF1-201ENST00000329231 CBY3A6NI87 242 aa19.52■□□□□ 0.72
ATPAF1-201ENST00000329231 HMGB3O15347 200 aaKnown RBP19.52■□□□□ 0.72
ATPAF1-201ENST00000329231 STAG3L2P0CL84 134 aa19.52■□□□□ 0.72
ATPAF1-201ENST00000329231 STAG3L3P0CL85 134 aa19.52■□□□□ 0.72
ATPAF1-201ENST00000329231 RNASE4P34096 147 aaKnown RBP19.52■□□□□ 0.72
ATPAF1-201ENST00000329231 TMEM88Q6PEY1 159 aa19.52■□□□□ 0.72
ATPAF1-201ENST00000329231 RXFP4Q8TDU9 374 aa19.52■□□□□ 0.72
ATPAF1-201ENST00000329231 RAB24Q969Q5 203 aa19.52■□□□□ 0.72
ATPAF1-201ENST00000329231 ACTR3CQ9C0K3 210 aaPredicted RBP19.52■□□□□ 0.72
ATPAF1-201ENST00000329231 SNURFLB1AK76 121 aa19.51■□□□□ 0.71
ATPAF1-201ENST00000329231 ATP5G1P05496 136 aa19.51■□□□□ 0.71
ATPAF1-201ENST00000329231 ATP5G3P48201 142 aa19.51■□□□□ 0.71
ATPAF1-201ENST00000329231 ZNF138P52744 262 aa19.51■□□□□ 0.71
ATPAF1-201ENST00000329231 CD300CQ08708 224 aa19.51■□□□□ 0.71
ATPAF1-201ENST00000329231 BTN1A1Q13410 526 aa19.51■□□□□ 0.71
ATPAF1-201ENST00000329231 TCTE3Q8IZS6 198 aa19.51■□□□□ 0.71
ATPAF1-201ENST00000329231 POM121L12Q8N7R1 296 aa19.51■□□□□ 0.71
ATPAF1-201ENST00000329231 TRBV7-9A0A0J9YWB2 115 aa19.5■□□□□ 0.71
ATPAF1-201ENST00000329231 ZNF324O75467 553 aaPredicted RBP19.5■□□□□ 0.71
ATPAF1-201ENST00000329231 ARL14EPLP0DKL9 152 aa19.5■□□□□ 0.71
ATPAF1-201ENST00000329231 FAM74A1Q5RGS3 127 aa19.5■□□□□ 0.71
ATPAF1-201ENST00000329231 ZFAND2AQ8N6M9 145 aa19.5■□□□□ 0.71
ATPAF1-201ENST00000329231 OTORQ9NRC9 128 aa19.5■□□□□ 0.71
ATPAF1-201ENST00000329231 KANTRA0A1W2PQU2 76 aa19.49■□□□□ 0.71
ATPAF1-201ENST00000329231 LINC00467Q9BRT7 94 aa19.49■□□□□ 0.71
ATPAF1-201ENST00000329231 VPS13DQ5THJ4 4388 aa19.48■□□□□ 0.71
ATPAF1-201ENST00000329231 DIRC3C9JPN6 131 aa19.48■□□□□ 0.71
ATPAF1-201ENST00000329231 F5H768 121 aa19.48■□□□□ 0.71
ATPAF1-201ENST00000329231 BCL2L11O43521 198 aa19.48■□□□□ 0.71
ATPAF1-201ENST00000329231 C15orf53Q8NAA6 179 aa19.48■□□□□ 0.71
ATPAF1-201ENST00000329231 ZNF680Q8NEM1 530 aa19.48■□□□□ 0.71
ATPAF1-201ENST00000329231 CMTM2Q8TAZ6 248 aa19.48■□□□□ 0.71
ATPAF1-201ENST00000329231 HYLS1Q96M11 299 aa19.48■□□□□ 0.71
ATPAF1-201ENST00000329231 hCG_2014768A0A024R1R8 64 aa19.47■□□□□ 0.71
ATPAF1-201ENST00000329231 AKR1C8PQ5T2L2 129 aa19.47■□□□□ 0.71
ATPAF1-201ENST00000329231 Q8TAT8 98 aa19.47■□□□□ 0.71
ATPAF1-201ENST00000329231 PGPA6NDG6 321 aa19.46■□□□□ 0.71
ATPAF1-201ENST00000329231 CXorf1O96002 111 aa19.46■□□□□ 0.71
ATPAF1-201ENST00000329231 EIF4E3Q8N5X7 224 aaKnown RBP19.46■□□□□ 0.71
ATPAF1-201ENST00000329231 LINC00612Q8N6U2 182 aa19.46■□□□□ 0.71
ATPAF1-201ENST00000329231 GCHFRP30047 84 aa19.45■□□□□ 0.7
ATPAF1-201ENST00000329231 DAZ2Q13117 558 aaKnown RBP19.45■□□□□ 0.7
ATPAF1-201ENST00000329231 ANXA2RQ3ZCQ2 193 aa19.45■□□□□ 0.7
ATPAF1-201ENST00000329231 PRR9Q5T870 116 aa19.45■□□□□ 0.7
ATPAF1-201ENST00000329231 TMUB2Q71RG4 321 aa19.45■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms